Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:36825623-37685635

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Elnv 9 31360262 to 37395074 6034812 QTL epilepsy naive
Tlf 9 34926452 to 37395074 2468622 QTL T lymphocyte fraction
Fez1 9 36821891 to 36878927 57036 + protein coding gene fasciculation and elongation protein zeta 1 (zygin I)
D9Mit128 9 36827484 to 36827625 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 128
Cpgi21565 9 36832613 to 36832945 332 CpG island CpG island 21565
Tssr84372 9 36832700 to 36832855 155 + TSS region transcription start site region 84372
Cpgi21566 9 36833347 to 36833750 403 CpG island CpG island 21566
2900046B09Rik 9 36847744 to 36848420 676 unclassified gene RIKEN cDNA 2900046B09 gene
Tssr84373 9 36850377 to 36850392 15 + TSS region transcription start site region 84373
Pknox2 9 36890979 to 37147327 256348 - protein coding gene Pbx/knotted 1 homeobox 2
Tssr88815 9 36923619 to 36923628 9 - TSS region transcription start site region 88815
D9Mit252 9 36969136 to 36969250 114 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 252
Gm34652 9 36972672 to 36979931 7259 + lncRNA gene predicted gene, 34652
Tssr2826 9 37008198 to 37008200 2 + TSS region transcription start site region 2826
Gm3896 9 37015758 to 37020671 4913 + antisense lncRNA gene predicted gene 3896
Tssr88816 9 37019825 to 37019849 24 - TSS region transcription start site region 88816
n-R5s82 9 37026399 to 37026507 108 + rRNA gene nuclear encoded rRNA 5S 82
D9Mit67 9 37032110 to 37032229 119 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 67
Lmr2 9 37032110 to 50199840 13167730 QTL leishmaniasis resistance 2
Pvcan2 9 37032110 to 37032229 119 QTL protection against vaginal candidiasis 2
Gm34538 9 37034688 to 37069714 35026 + lncRNA gene predicted gene, 34538
Gm48716 9 37118656 to 37120064 1408 + antisense lncRNA gene predicted gene, 48716
D9Mit247 9 37132907 to 37133055 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 247
Gm48717 9 37138553 to 37139624 1071 - unclassified gene predicted gene, 48717
Cpgi21567 9 37145148 to 37147580 2432 CpG island CpG island 21567
Tssr88817 9 37147257 to 37147323 66 - TSS region transcription start site region 88817
Gm25273 9 37172880 to 37172994 114 - snoRNA gene predicted gene, 25273
Cpgi21568 9 37207929 to 37208480 551 CpG island CpG island 21568
Tssr88818 9 37208031 to 37208034 3 - TSS region transcription start site region 88818
Tssr84374 9 37208176 to 37208195 19 + TSS region transcription start site region 84374
Tmem218 9 37208223 to 37223228 15005 + protein coding gene transmembrane protein 218
Tssr84375 9 37208291 to 37208360 69 + TSS region transcription start site region 84375
Slc37a2 9 37229149 to 37255738 26589 - protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 2
Tssr88819 9 37233675 to 37233693 18 - TSS region transcription start site region 88819
Tssr88820 9 37238798 to 37238801 3 - TSS region transcription start site region 88820
Pid2 9 37242066 to 44340026 7097960 QTL prion incubation determinant 2
Morph2 9 37242066 to 37242196 130 QTL morphine antinociception 2
D9Mit91 9 37242066 to 37242196 130 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 91
Tssr84376 9 37247713 to 37247760 47 + TSS region transcription start site region 84376
Gm10177 9 37252922 to 37253365 443 + pseudogene predicted gene 10177
Cpgi21569 9 37255172 to 37255587 415 CpG island CpG island 21569
Tssr88821 9 37255357 to 37255364 7 - TSS region transcription start site region 88821
Tssr88822 9 37255381 to 37255392 11 - TSS region transcription start site region 88822
Tssr88823 9 37255403 to 37255419 16 - TSS region transcription start site region 88823
Tssr88824 9 37255429 to 37255442 13 - TSS region transcription start site region 88824
Tssr88825 9 37255444 to 37255461 17 - TSS region transcription start site region 88825
Gm48081 9 37255498 to 37256149 651 + antisense lncRNA gene predicted gene, 48081
Tssr88826 9 37255530 to 37255553 23 - TSS region transcription start site region 88826
Tssr88827 9 37255623 to 37255635 12 - TSS region transcription start site region 88827
Tssr88828 9 37255646 to 37255665 19 - TSS region transcription start site region 88828
Tssr88829 9 37255669 to 37255683 14 - TSS region transcription start site region 88829
Tssr88830 9 37255685 to 37255711 26 - TSS region transcription start site region 88830
Tssr88831 9 37255730 to 37255744 14 - TSS region transcription start site region 88831
Gm47633 9 37264093 to 37264659 566 - lincRNA gene predicted gene, 47633
Gm47640 9 37269287 to 37272168 2881 + unclassified gene predicted gene, 47640
Gm18329 9 37275258 to 37275830 572 + pseudogene predicted gene, 18329
Ccdc15 9 37275835 to 37348432 72597 - protein coding gene coiled-coil domain containing 15
Gm47643 9 37296126 to 37299361 3235 - unclassified gene predicted gene, 47643
D9Mit205 9 37298324 to 37298517 193 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 205
Gm34885 9 37312136 to 37324436 12300 + antisense lncRNA gene predicted gene, 34885
Gm47652 9 37329767 to 37334429 4662 - unclassified gene predicted gene, 47652
Cpgi21570 9 37348096 to 37348677 581 CpG island CpG island 21570
Tssr88832 9 37348312 to 37348321 9 - TSS region transcription start site region 88832
Tssr88833 9 37348339 to 37348366 27 - TSS region transcription start site region 88833
Tssr88834 9 37348369 to 37348391 22 - TSS region transcription start site region 88834
Tssr88835 9 37348395 to 37348422 27 - TSS region transcription start site region 88835
Tssr84377 9 37348443 to 37348502 59 + TSS region transcription start site region 84377
Tssr84378 9 37348540 to 37348549 9 + TSS region transcription start site region 84378
Tssr84379 9 37367334 to 37367347 13 + TSS region transcription start site region 84379
Tssr84380 9 37367354 to 37367378 24 + TSS region transcription start site region 84380
Hepacam 9 37367606 to 37386572 18966 + protein coding gene hepatocyte cell adhesion molecule
Tssr84381 9 37367627 to 37367656 29 + TSS region transcription start site region 84381
Tssr84382 9 37367666 to 37367672 6 + TSS region transcription start site region 84382
Tssr84383 9 37367677 to 37367682 5 + TSS region transcription start site region 84383
Tssr84384 9 37379844 to 37379873 29 + TSS region transcription start site region 84384
Cpgi21571 9 37380482 to 37380770 288 CpG island CpG island 21571
Cpgi21572 9 37384280 to 37385027 747 CpG island CpG island 21572
Tssr84385 9 37385905 to 37385920 15 + TSS region transcription start site region 84385
Tssr84386 9 37385942 to 37385957 15 + TSS region transcription start site region 84386
Sluc10 9 37394901 to 37395074 173 QTL susceptibility to lung cancer 10
Pbft5 9 37394901 to 37395074 173 QTL percent body fat 5
Skull12 9 37394901 to 37395074 173 QTL skull morphology 12
D9Mit2 9 37394901 to 37395074 173 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 2
Alpq3 9 37394901 to 98819654 61424753 QTL alcohol preference QTL 3
Lmr17 9 37394901 to 37395074 173 QTL leishmaniasis resistance 17
Sles4 9 37395074 to 9107561 -28287513 QTL systemic lupus erythmatosus suppressor 4
Tssr84387 9 37400216 to 37400223 7 + TSS region transcription start site region 84387
Robo4 9 37401897 to 37414023 12126 + protein coding gene roundabout guidance receptor 4
Tssr84388 9 37401963 to 37401980 17 + TSS region transcription start site region 84388
Tssr84389 9 37401993 to 37402057 64 + TSS region transcription start site region 84389
Tssr84390 9 37402066 to 37402077 11 + TSS region transcription start site region 84390
Robo3 9 37416045 to 37433435 17390 - protein coding gene roundabout guidance receptor 3
Cpgi21573 9 37420685 to 37421596 911 CpG island CpG island 21573
Cpgi21574 9 37429474 to 37429820 346 CpG island CpG island 21574
Tssr88836 9 37430882 to 37430898 16 - TSS region transcription start site region 88836
Cpgi21575 9 37432833 to 37433371 538 CpG island CpG island 21575
Tssr88837 9 37433112 to 37433123 11 - TSS region transcription start site region 88837
Tssr88838 9 37433138 to 37433167 29 - TSS region transcription start site region 88838
Tssr88839 9 37433246 to 37433250 4 - TSS region transcription start site region 88839
Tssr84391 9 37434172 to 37434211 39 + TSS region transcription start site region 84391
Cpgi21576 9 37456500 to 37456941 441 CpG island CpG island 21576
Cpgi21577 9 37459964 to 37460957 993 CpG island CpG island 21577
Gm47945 9 37478453 to 37478643 190 - pseudogene predicted gene, 47945
BB236558 9 37487977 to 37489097 1120 unclassified gene expressed sequence BB236558
Tssr84392 9 37488770 to 37488782 12 + TSS region transcription start site region 84392
Cpgi21578 9 37488814 to 37490314 1500 CpG island CpG island 21578
Tssr84393 9 37488988 to 37488999 11 + TSS region transcription start site region 84393
Tssr84394 9 37489023 to 37489050 27 + TSS region transcription start site region 84394
Tssr2827 9 37489062 to 37489079 17 + TSS region transcription start site region 2827
Tssr84395 9 37489281 to 37489326 45 + TSS region transcription start site region 84395
Msantd2 9 37489319 to 37524625 35306 + protein coding gene Myb/SANT-like DNA-binding domain containing 2
Tssr88840 9 37489829 to 37489853 24 - TSS region transcription start site region 88840
Gm47963 9 37497769 to 37499912 2143 + unclassified gene predicted gene, 47963
Cpgi21579 9 37527663 to 37528179 516 CpG island CpG island 21579
Tssr84396 9 37528047 to 37528058 11 + TSS region transcription start site region 84396
Tssr84397 9 37528071 to 37528148 77 + TSS region transcription start site region 84397
Esam 9 37528089 to 37538319 10230 + protein coding gene endothelial cell-specific adhesion molecule
Cpgi21580 9 37530276 to 37530697 421 CpG island CpG island 21580
Cpgi21581 9 37530932 to 37531323 391 CpG island CpG island 21581
Tssr84398 9 37531121 to 37531138 17 + TSS region transcription start site region 84398
Vsig2 9 37539255 to 37544205 4950 + protein coding gene V-set and immunoglobulin domain containing 2
Tssr84399 9 37539265 to 37539279 14 + TSS region transcription start site region 84399
Cpgi21582 9 37539842 to 37540078 236 CpG island CpG island 21582
Nrgn 9 37544493 to 37552745 8252 - protein coding gene neurogranin
Tssr88841 9 37544553 to 37544563 10 - TSS region transcription start site region 88841
Tssr88842 9 37544565 to 37544578 13 - TSS region transcription start site region 88842
Tssr84400 9 37544953 to 37544958 5 + TSS region transcription start site region 84400
Cpgi21583 9 37544965 to 37545318 353 CpG island CpG island 21583
Tssr88843 9 37544966 to 37545018 52 - TSS region transcription start site region 88843
Tssr84401 9 37544995 to 37545006 11 + TSS region transcription start site region 84401
Tssr88844 9 37545024 to 37545035 11 - TSS region transcription start site region 88844
Tssr84402 9 37545040 to 37545047 7 + TSS region transcription start site region 84402
Tssr88845 9 37545042 to 37545052 10 - TSS region transcription start site region 88845
Tssr88846 9 37545058 to 37545075 17 - TSS region transcription start site region 88846
Tssr84403 9 37545061 to 37545066 5 + TSS region transcription start site region 84403
Tssr88847 9 37545081 to 37545094 13 - TSS region transcription start site region 88847
Tssr88848 9 37545102 to 37545121 19 - TSS region transcription start site region 88848
Tssr84404 9 37545105 to 37545122 17 + TSS region transcription start site region 84404
Tssr84405 9 37545140 to 37545150 10 + TSS region transcription start site region 84405
Tssr88849 9 37545140 to 37545162 22 - TSS region transcription start site region 88849
Tssr88850 9 37545167 to 37545188 21 - TSS region transcription start site region 88850
Tssr84406 9 37545174 to 37545181 7 + TSS region transcription start site region 84406
Tssr88851 9 37545198 to 37545229 31 - TSS region transcription start site region 88851
Tssr84407 9 37545223 to 37545243 20 + TSS region transcription start site region 84407
Tssr84408 9 37545251 to 37545273 22 + TSS region transcription start site region 84408
Tssr88852 9 37545254 to 37545273 19 - TSS region transcription start site region 88852
Tssr88853 9 37545285 to 37545292 7 - TSS region transcription start site region 88853
Tssr88854 9 37545313 to 37545325 12 - TSS region transcription start site region 88854
Cpgi21584 9 37545936 to 37546116 180 CpG island CpG island 21584
Tssr84409 9 37545939 to 37545947 8 + TSS region transcription start site region 84409
Tssr88855 9 37546058 to 37546089 31 - TSS region transcription start site region 88855
Tssr88856 9 37546132 to 37546184 52 - TSS region transcription start site region 88856
Tssr88857 9 37546956 to 37546960 4 - TSS region transcription start site region 88857
Cpgi21585 9 37552405 to 37552889 484 CpG island CpG island 21585
Tssr88858 9 37552664 to 37552711 47 - TSS region transcription start site region 88858
Tssr88859 9 37552725 to 37552741 16 - TSS region transcription start site region 88859
Tssr88860 9 37552955 to 37552982 27 - TSS region transcription start site region 88860
Tssr88861 9 37553391 to 37553397 6 - TSS region transcription start site region 88861
Gm46107 9 37555256 to 37567479 12223 + lncRNA gene predicted gene, 46107
Tssr84410 9 37555614 to 37555628 14 + TSS region transcription start site region 84410
Tssr84411 9 37555637 to 37555643 6 + TSS region transcription start site region 84411
Tssr84412 9 37555645 to 37555656 11 + TSS region transcription start site region 84412
Tssr84413 9 37555671 to 37555688 17 + TSS region transcription start site region 84413
Tssr84414 9 37555693 to 37555704 11 + TSS region transcription start site region 84414
Spa17 9 37603290 to 37613722 10432 - protein coding gene sperm autoantigenic protein 17
Tssr88862 9 37607656 to 37607659 3 - TSS region transcription start site region 88862
Tssr2828 9 37609085 to 37609120 35 + TSS region transcription start site region 2828
D9Mit326 9 37611630 to 37611878 248 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 326
Cpgi21586 9 37613294 to 37614085 791 CpG island CpG island 21586
Tssr88863 9 37613542 to 37613553 11 - TSS region transcription start site region 88863
Tssr88864 9 37613578 to 37613626 48 - TSS region transcription start site region 88864
Tssr88865 9 37613715 to 37613728 13 - TSS region transcription start site region 88865
Tssr84415 9 37613806 to 37613858 52 + TSS region transcription start site region 84415
Siae 9 37613847 to 37648318 34471 + protein coding gene sialic acid acetylesterase
Tbrg1 9 37649182 to 37657312 8130 - protein coding gene transforming growth factor beta regulated gene 1
Cpgi21587 9 37656875 to 37657480 605 CpG island CpG island 21587
Tssr88866 9 37657155 to 37657164 9 - TSS region transcription start site region 88866
Tssr88867 9 37657189 to 37657273 84 - TSS region transcription start site region 88867
Tssr88868 9 37657274 to 37657285 11 - TSS region transcription start site region 88868
Panx3 9 37659902 to 37669222 9320 - protein coding gene pannexin 3
Tssr88869 9 37669158 to 37669167 9 - TSS region transcription start site region 88869
Tssr88870 9 37669170 to 37669226 56 - TSS region transcription start site region 88870