Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:36731399-37321507

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Stt3a 9 36729345 to 36767679 38334 - protein coding gene STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
Tssr88799 9 36757000 to 36757011 11 - TSS region transcription start site region 88799
Tssr88800 9 36757021 to 36757036 15 - TSS region transcription start site region 88800
Tssr88801 9 36759239 to 36759253 14 - TSS region transcription start site region 88801
Tssr88802 9 36760284 to 36760288 4 - TSS region transcription start site region 88802
Cpgi21563 9 36767104 to 36768222 1118 CpG island CpG island 21563
Tssr88803 9 36767572 to 36767586 14 - TSS region transcription start site region 88803
Tssr88804 9 36767595 to 36767638 43 - TSS region transcription start site region 88804
Gm26787 9 36767657 to 36782191 14534 + antisense lncRNA gene predicted gene, 26787
Tssr84370 9 36767881 to 36767892 11 + TSS region transcription start site region 84370
Tssr84371 9 36768012 to 36768031 19 + TSS region transcription start site region 84371
Ei24 9 36779159 to 36797393 18234 - protein coding gene etoposide induced 2.4 mRNA
Tssr88805 9 36779838 to 36779850 12 - TSS region transcription start site region 88805
Tssr88806 9 36779997 to 36780012 15 - TSS region transcription start site region 88806
Tssr88807 9 36780036 to 36780055 19 - TSS region transcription start site region 88807
Tssr88808 9 36782795 to 36782812 17 - TSS region transcription start site region 88808
Tssr88809 9 36784553 to 36784581 28 - TSS region transcription start site region 88809
Tssr88810 9 36784817 to 36784824 7 - TSS region transcription start site region 88810
Tssr88811 9 36785980 to 36785998 18 - TSS region transcription start site region 88811
Cpgi21564 9 36796808 to 36797513 705 CpG island CpG island 21564
Tssr88812 9 36797282 to 36797293 11 - TSS region transcription start site region 88812
Tssr88813 9 36797303 to 36797425 122 - TSS region transcription start site region 88813
Tssr88814 9 36798696 to 36798701 5 - TSS region transcription start site region 88814
Gm27219 9 36813133 to 36813874 741 - pseudogene predicted gene 27219
Fez1 9 36821891 to 36878927 57036 + protein coding gene fasciculation and elongation protein zeta 1 (zygin I)
D9Mit224 9 36824947 to 36825057 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 224
Rapop7 9 36824947 to 49509211 12684264 QTL radiation-induced apoptosis 6
D9Mit128 9 36827484 to 36827625 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 128
Cpgi21565 9 36832613 to 36832945 332 CpG island CpG island 21565
Tssr84372 9 36832700 to 36832855 155 + TSS region transcription start site region 84372
Cpgi21566 9 36833347 to 36833750 403 CpG island CpG island 21566
2900046B09Rik 9 36847744 to 36848420 676 unclassified gene RIKEN cDNA 2900046B09 gene
Tssr84373 9 36850377 to 36850392 15 + TSS region transcription start site region 84373
Pknox2 9 36890979 to 37147327 256348 - protein coding gene Pbx/knotted 1 homeobox 2
Tssr88815 9 36923619 to 36923628 9 - TSS region transcription start site region 88815
D9Mit252 9 36969136 to 36969250 114 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 252
Gm34652 9 36972672 to 36979931 7259 + lncRNA gene predicted gene, 34652
Tssr2826 9 37008198 to 37008200 2 + TSS region transcription start site region 2826
Gm3896 9 37015758 to 37020671 4913 + antisense lncRNA gene predicted gene 3896
Tssr88816 9 37019825 to 37019849 24 - TSS region transcription start site region 88816
n-R5s82 9 37026399 to 37026507 108 + rRNA gene nuclear encoded rRNA 5S 82
Pvcan2 9 37032110 to 37032229 119 QTL protection against vaginal candidiasis 2
D9Mit67 9 37032110 to 37032229 119 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 67
Lmr2 9 37032110 to 50199840 13167730 QTL leishmaniasis resistance 2
Gm34538 9 37034688 to 37069714 35026 + lncRNA gene predicted gene, 34538
Gm48716 9 37118656 to 37120064 1408 + antisense lncRNA gene predicted gene, 48716
D9Mit247 9 37132907 to 37133055 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 247
Gm48717 9 37138553 to 37139624 1071 - unclassified gene predicted gene, 48717
Cpgi21567 9 37145148 to 37147580 2432 CpG island CpG island 21567
Tssr88817 9 37147257 to 37147323 66 - TSS region transcription start site region 88817
Gm25273 9 37172880 to 37172994 114 - snoRNA gene predicted gene, 25273
Cpgi21568 9 37207929 to 37208480 551 CpG island CpG island 21568
Tssr88818 9 37208031 to 37208034 3 - TSS region transcription start site region 88818
Tssr84374 9 37208176 to 37208195 19 + TSS region transcription start site region 84374
Tmem218 9 37208223 to 37223228 15005 + protein coding gene transmembrane protein 218
Tssr84375 9 37208291 to 37208360 69 + TSS region transcription start site region 84375
Slc37a2 9 37229149 to 37255738 26589 - protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 2
Tssr88819 9 37233675 to 37233693 18 - TSS region transcription start site region 88819
Tssr88820 9 37238798 to 37238801 3 - TSS region transcription start site region 88820
D9Mit91 9 37242066 to 37242196 130 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 91
Morph2 9 37242066 to 37242196 130 QTL morphine antinociception 2
Pid2 9 37242066 to 44340026 7097960 QTL prion incubation determinant 2
Tssr84376 9 37247713 to 37247760 47 + TSS region transcription start site region 84376
Gm10177 9 37252922 to 37253365 443 + pseudogene predicted gene 10177
Cpgi21569 9 37255172 to 37255587 415 CpG island CpG island 21569
Tssr88821 9 37255357 to 37255364 7 - TSS region transcription start site region 88821
Tssr88822 9 37255381 to 37255392 11 - TSS region transcription start site region 88822
Tssr88823 9 37255403 to 37255419 16 - TSS region transcription start site region 88823
Tssr88824 9 37255429 to 37255442 13 - TSS region transcription start site region 88824
Tssr88825 9 37255444 to 37255461 17 - TSS region transcription start site region 88825
Gm48081 9 37255498 to 37256149 651 + antisense lncRNA gene predicted gene, 48081
Tssr88826 9 37255530 to 37255553 23 - TSS region transcription start site region 88826
Tssr88827 9 37255623 to 37255635 12 - TSS region transcription start site region 88827
Tssr88828 9 37255646 to 37255665 19 - TSS region transcription start site region 88828
Tssr88829 9 37255669 to 37255683 14 - TSS region transcription start site region 88829
Tssr88830 9 37255685 to 37255711 26 - TSS region transcription start site region 88830
Tssr88831 9 37255730 to 37255744 14 - TSS region transcription start site region 88831
Gm47633 9 37264093 to 37264659 566 - lincRNA gene predicted gene, 47633
Gm47640 9 37269287 to 37272168 2881 + unclassified gene predicted gene, 47640
Gm18329 9 37275258 to 37275830 572 + pseudogene predicted gene, 18329
Ccdc15 9 37275835 to 37348432 72597 - protein coding gene coiled-coil domain containing 15
Gm47643 9 37296126 to 37299361 3235 - unclassified gene predicted gene, 47643
D9Mit205 9 37298324 to 37298517 193 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 205
Gm34885 9 37312136 to 37324436 12300 + antisense lncRNA gene predicted gene, 34885