Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:36116884-36749938

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm5916 9 36119934 to 36128779 8845 - protein coding gene predicted gene 5916
Gm3434 9 36134287 to 36135630 1343 - lincRNA gene predicted gene 3434
Tssr88776 9 36135626 to 36135634 8 - TSS region transcription start site region 88776
Gm48391 9 36249948 to 36263066 13118 + pseudogene predicted gene, 48391
Gm3867 9 36257803 to 36258321 518 - lincRNA gene predicted gene 3867
Gm48401 9 36376974 to 36380808 3834 - pseudogene predicted gene, 48401
Gm48407 9 36381685 to 36381899 214 + pseudogene predicted gene, 48407
Tssr84362 9 36431822 to 36431836 14 + TSS region transcription start site region 84362
Tssr84363 9 36431844 to 36431853 9 + TSS region transcription start site region 84363
Pate12 9 36431884 to 36434938 3054 + protein coding gene prostate and testis expressed 12
Tssr84364 9 36475580 to 36475585 5 + TSS region transcription start site region 84364
Pate11 9 36475638 to 36477186 1548 + protein coding gene prostate and testis expressed 11
Tssr84365 9 36481889 to 36481892 3 + TSS region transcription start site region 84365
Gm27160 9 36482296 to 36482494 198 + pseudogene predicted gene 27160
Tssr88777 9 36493295 to 36493309 14 - TSS region transcription start site region 88777
Tssr88778 9 36493361 to 36493368 7 - TSS region transcription start site region 88778
Tssr88779 9 36529446 to 36529464 18 - TSS region transcription start site region 88779
Tssr88780 9 36532174 to 36532180 6 - TSS region transcription start site region 88780
Pate9 9 36532403 to 36541963 9560 - protein coding gene prostate and testis expressed 9
Tssr88781 9 36533728 to 36533770 42 - TSS region transcription start site region 88781
Tssr88782 9 36533800 to 36533811 11 - TSS region transcription start site region 88782
Tssr88783 9 36533852 to 36533868 16 - TSS region transcription start site region 88783
Tssr88784 9 36534006 to 36534015 9 - TSS region transcription start site region 88784
Tssr88785 9 36534023 to 36534024 1 - TSS region transcription start site region 88785
Gm27218 9 36537932 to 36538323 391 + pseudogene predicted gene 27218
Tssr88786 9 36541886 to 36541901 15 - TSS region transcription start site region 88786
D9Mit226 9 36546048 to 36546368 320 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 226
Gm48431 9 36567701 to 36567969 268 + pseudogene predicted gene, 48431
Pate8 9 36581278 to 36582635 1357 - protein coding gene prostate and testis expressed 8
Tssr88787 9 36599487 to 36599495 8 - TSS region transcription start site region 88787
Gm49367 9 36635753 to 36692969 57216 - unclassified non-coding RNA gene predicted gene, 49367
Pate14 9 36635754 to 36638602 2848 - protein coding gene prostate and testis expressed 14
Tssr88788 9 36637226 to 36637238 12 - TSS region transcription start site region 88788
Tssr88789 9 36638595 to 36638609 14 - TSS region transcription start site region 88789
1700027I24Rik 9 36668856 to 36693189 24333 - bidirectional promoter lncRNA gene RIKEN cDNA 1700027I24 gene
Gm48443 9 36672697 to 36676537 3840 + pseudogene predicted gene, 48443
Tssr88790 9 36693111 to 36693123 12 - TSS region transcription start site region 88790
Tssr88791 9 36693130 to 36693141 11 - TSS region transcription start site region 88791
Tssr88792 9 36693143 to 36693149 6 - TSS region transcription start site region 88792
Tssr88793 9 36693158 to 36693164 6 - TSS region transcription start site region 88793
Tssr84366 9 36693217 to 36693221 4 + TSS region transcription start site region 84366
Acrv1 9 36693220 to 36698837 5617 + protein coding gene acrosomal vesicle protein 1
Tssr84367 9 36693225 to 36693232 7 + TSS region transcription start site region 84367
Tssr84368 9 36693247 to 36693256 9 + TSS region transcription start site region 84368
Chek1 9 36708482 to 36726658 18176 - protein coding gene checkpoint kinase 1
Tssr88794 9 36726140 to 36726155 15 - TSS region transcription start site region 88794
Cpgi21562 9 36726155 to 36727084 929 CpG island CpG island 21562
Tssr88795 9 36726588 to 36726607 19 - TSS region transcription start site region 88795
Tssr88796 9 36726627 to 36726636 9 - TSS region transcription start site region 88796
Tssr84369 9 36726675 to 36726722 47 + TSS region transcription start site region 84369
Stt3a 9 36729345 to 36767679 38334 - protein coding gene STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
Tssr88797 9 36730022 to 36730025 3 - TSS region transcription start site region 88797
Tssr88798 9 36731060 to 36731065 5 - TSS region transcription start site region 88798