Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:35642803-36873321

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pate2 9 35611800 to 35672889 61089 + protein coding gene prostate and testis expressed 2
Pate3 9 35645113 to 35648202 3089 - protein coding gene prostate and testis expressed 3
Tssr88758 9 35648169 to 35648180 11 - TSS region transcription start site region 88758
Tssr88759 9 35648193 to 35648208 15 - TSS region transcription start site region 88759
Tssr84351 9 35669624 to 35669678 54 + TSS region transcription start site region 84351
Tssr84352 9 35672664 to 35672675 11 + TSS region transcription start site region 84352
Tssr84353 9 35672833 to 35672864 31 + TSS region transcription start site region 84353
Pate1 9 35685079 to 35687371 2292 - protein coding gene prostate and testis expressed 1
Tssr88760 9 35687014 to 35687033 19 - TSS region transcription start site region 88760
Tssr88761 9 35687386 to 35687391 5 - TSS region transcription start site region 88761
Tssr84354 9 35740902 to 35740907 5 + TSS region transcription start site region 84354
Tssr84355 9 35740957 to 35740966 9 + TSS region transcription start site region 84355
Tssr84356 9 35740970 to 35740971 1 + TSS region transcription start site region 84356
Tssr84357 9 35740982 to 35740989 7 + TSS region transcription start site region 84357
Tssr84358 9 35741030 to 35741034 4 + TSS region transcription start site region 84358
Pate10 9 35741049 to 35742252 1203 + protein coding gene prostate and testis expressed 10
Gm27235 9 35776524 to 35790101 13577 - protein coding gene predicted gene 27235
Pate7 9 35776524 to 35778109 1585 - protein coding gene prostate and testis expressed 7
Tssr88762 9 35777922 to 35777932 10 - TSS region transcription start site region 88762
Tssr88763 9 35777940 to 35777952 12 - TSS region transcription start site region 88763
Pate6 9 35788050 to 35790112 2062 - protein coding gene prostate and testis expressed 6
Tssr88764 9 35790075 to 35790090 15 - TSS region transcription start site region 88764
Tssr88765 9 35790101 to 35790106 5 - TSS region transcription start site region 88765
Gm36974 9 35835387 to 35836457 1070 + unclassified gene predicted gene, 36974
Pate5 9 35838329 to 35844150 5821 - protein coding gene prostate and testis expressed 5
Tssr88766 9 35844065 to 35844088 23 - TSS region transcription start site region 88766
Tssr88767 9 35844094 to 35844106 12 - TSS region transcription start site region 88767
Tssr88768 9 35844179 to 35844197 18 - TSS region transcription start site region 88768
Tssr88769 9 35844203 to 35844219 16 - TSS region transcription start site region 88769
Tssr88770 9 35844222 to 35844233 11 - TSS region transcription start site region 88770
Gm3428 9 35848545 to 35849880 1335 - lncRNA gene predicted gene 3428
Tssr88771 9 35849900 to 35849905 5 - TSS region transcription start site region 88771
Tssr88772 9 35849926 to 35849938 12 - TSS region transcription start site region 88772
Tssr88773 9 35849972 to 35849997 25 - TSS region transcription start site region 88773
Tssr84359 9 35908302 to 35908304 2 + TSS region transcription start site region 84359
Tssr2824 9 35908362 to 35908366 4 + TSS region transcription start site region 2824
Tssr2825 9 35908385 to 35908393 8 + TSS region transcription start site region 2825
Tssr84360 9 35908412 to 35908423 11 + TSS region transcription start site region 84360
Pate13 9 35908423 to 35910796 2373 + protein coding gene prostate and testis expressed 13
Tssr84361 9 35909592 to 35909599 7 + TSS region transcription start site region 84361
Tssr88774 9 35934365 to 35934366 1 - TSS region transcription start site region 88774
Gm27187 9 35960687 to 36011558 50871 - lincRNA gene predicted gene 27187
Tssr88775 9 35969518 to 35969522 4 - TSS region transcription start site region 88775
Gm48348 9 36089920 to 36092359 2439 - pseudogene predicted gene, 48348
Gm5916 9 36119934 to 36128779 8845 - protein coding gene predicted gene 5916
Gm3434 9 36134287 to 36135630 1343 - lincRNA gene predicted gene 3434
Tssr88776 9 36135626 to 36135634 8 - TSS region transcription start site region 88776
Gm48391 9 36249948 to 36263066 13118 + pseudogene predicted gene, 48391
Gm3867 9 36257803 to 36258321 518 - lincRNA gene predicted gene 3867
Gm48401 9 36376974 to 36380808 3834 - pseudogene predicted gene, 48401
Gm48407 9 36381685 to 36381899 214 + pseudogene predicted gene, 48407
Tssr84362 9 36431822 to 36431836 14 + TSS region transcription start site region 84362
Tssr84363 9 36431844 to 36431853 9 + TSS region transcription start site region 84363
Pate12 9 36431884 to 36434938 3054 + protein coding gene prostate and testis expressed 12
Tssr84364 9 36475580 to 36475585 5 + TSS region transcription start site region 84364
Pate11 9 36475638 to 36477186 1548 + protein coding gene prostate and testis expressed 11
Tssr84365 9 36481889 to 36481892 3 + TSS region transcription start site region 84365
Gm27160 9 36482296 to 36482494 198 + pseudogene predicted gene 27160
Tssr88777 9 36493295 to 36493309 14 - TSS region transcription start site region 88777
Tssr88778 9 36493361 to 36493368 7 - TSS region transcription start site region 88778
Tssr88779 9 36529446 to 36529464 18 - TSS region transcription start site region 88779
Tssr88780 9 36532174 to 36532180 6 - TSS region transcription start site region 88780
Pate9 9 36532403 to 36541963 9560 - protein coding gene prostate and testis expressed 9
Tssr88781 9 36533728 to 36533770 42 - TSS region transcription start site region 88781
Tssr88782 9 36533800 to 36533811 11 - TSS region transcription start site region 88782
Tssr88783 9 36533852 to 36533868 16 - TSS region transcription start site region 88783
Tssr88784 9 36534006 to 36534015 9 - TSS region transcription start site region 88784
Tssr88785 9 36534023 to 36534024 1 - TSS region transcription start site region 88785
Gm27218 9 36537932 to 36538323 391 + pseudogene predicted gene 27218
Tssr88786 9 36541886 to 36541901 15 - TSS region transcription start site region 88786
D9Mit226 9 36546048 to 36546368 320 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 226
Gm48431 9 36567701 to 36567969 268 + pseudogene predicted gene, 48431
Pate8 9 36581278 to 36582635 1357 - protein coding gene prostate and testis expressed 8
Tssr88787 9 36599487 to 36599495 8 - TSS region transcription start site region 88787
Gm49367 9 36635753 to 36692969 57216 - unclassified non-coding RNA gene predicted gene, 49367
Pate14 9 36635754 to 36638602 2848 - protein coding gene prostate and testis expressed 14
Tssr88788 9 36637226 to 36637238 12 - TSS region transcription start site region 88788
Tssr88789 9 36638595 to 36638609 14 - TSS region transcription start site region 88789
1700027I24Rik 9 36668856 to 36693189 24333 - bidirectional promoter lncRNA gene RIKEN cDNA 1700027I24 gene
Gm48443 9 36672697 to 36676537 3840 + pseudogene predicted gene, 48443
Tssr88790 9 36693111 to 36693123 12 - TSS region transcription start site region 88790
Tssr88791 9 36693130 to 36693141 11 - TSS region transcription start site region 88791
Tssr88792 9 36693143 to 36693149 6 - TSS region transcription start site region 88792
Tssr88793 9 36693158 to 36693164 6 - TSS region transcription start site region 88793
Tssr84366 9 36693217 to 36693221 4 + TSS region transcription start site region 84366
Acrv1 9 36693220 to 36698837 5617 + protein coding gene acrosomal vesicle protein 1
Tssr84367 9 36693225 to 36693232 7 + TSS region transcription start site region 84367
Tssr84368 9 36693247 to 36693256 9 + TSS region transcription start site region 84368
Chek1 9 36708482 to 36726658 18176 - protein coding gene checkpoint kinase 1
Tssr88794 9 36726140 to 36726155 15 - TSS region transcription start site region 88794
Cpgi21562 9 36726155 to 36727084 929 CpG island CpG island 21562
Tssr88795 9 36726588 to 36726607 19 - TSS region transcription start site region 88795
Tssr88796 9 36726627 to 36726636 9 - TSS region transcription start site region 88796
Tssr84369 9 36726675 to 36726722 47 + TSS region transcription start site region 84369
Stt3a 9 36729345 to 36767679 38334 - protein coding gene STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
Tssr88797 9 36730022 to 36730025 3 - TSS region transcription start site region 88797
Tssr88798 9 36731060 to 36731065 5 - TSS region transcription start site region 88798
Tssr88799 9 36757000 to 36757011 11 - TSS region transcription start site region 88799
Tssr88800 9 36757021 to 36757036 15 - TSS region transcription start site region 88800
Tssr88801 9 36759239 to 36759253 14 - TSS region transcription start site region 88801
Tssr88802 9 36760284 to 36760288 4 - TSS region transcription start site region 88802
Cpgi21563 9 36767104 to 36768222 1118 CpG island CpG island 21563
Tssr88803 9 36767572 to 36767586 14 - TSS region transcription start site region 88803
Tssr88804 9 36767595 to 36767638 43 - TSS region transcription start site region 88804
Gm26787 9 36767657 to 36782191 14534 + antisense lncRNA gene predicted gene, 26787
Tssr84370 9 36767881 to 36767892 11 + TSS region transcription start site region 84370
Tssr84371 9 36768012 to 36768031 19 + TSS region transcription start site region 84371
Ei24 9 36779159 to 36797393 18234 - protein coding gene etoposide induced 2.4 mRNA
Tssr88805 9 36779838 to 36779850 12 - TSS region transcription start site region 88805
Tssr88806 9 36779997 to 36780012 15 - TSS region transcription start site region 88806
Tssr88807 9 36780036 to 36780055 19 - TSS region transcription start site region 88807
Tssr88808 9 36782795 to 36782812 17 - TSS region transcription start site region 88808
Tssr88809 9 36784553 to 36784581 28 - TSS region transcription start site region 88809
Tssr88810 9 36784817 to 36784824 7 - TSS region transcription start site region 88810
Tssr88811 9 36785980 to 36785998 18 - TSS region transcription start site region 88811
Cpgi21564 9 36796808 to 36797513 705 CpG island CpG island 21564
Tssr88812 9 36797282 to 36797293 11 - TSS region transcription start site region 88812
Tssr88813 9 36797303 to 36797425 122 - TSS region transcription start site region 88813
Tssr88814 9 36798696 to 36798701 5 - TSS region transcription start site region 88814
Gm27219 9 36813133 to 36813874 741 - pseudogene predicted gene 27219
Fez1 9 36821891 to 36878927 57036 + protein coding gene fasciculation and elongation protein zeta 1 (zygin I)
Rapop7 9 36824947 to 49509211 12684264 QTL radiation-induced apoptosis 6
D9Mit224 9 36824947 to 36825057 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 224
D9Mit128 9 36827484 to 36827625 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 128
Cpgi21565 9 36832613 to 36832945 332 CpG island CpG island 21565
Tssr84372 9 36832700 to 36832855 155 + TSS region transcription start site region 84372
Cpgi21566 9 36833347 to 36833750 403 CpG island CpG island 21566
2900046B09Rik 9 36847744 to 36848420 676 unclassified gene RIKEN cDNA 2900046B09 gene
Tssr84373 9 36850377 to 36850392 15 + TSS region transcription start site region 84373