Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:35211541-35631616

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21554 9 35210530 to 35211797 1267 CpG island CpG island 21554
Srpr 9 35211203 to 35217003 5800 + protein coding gene signal recognition particle receptor ('docking protein')
Fam118b 9 35216965 to 35267805 50840 - protein coding gene family with sequence similarity 118, member B
Cpgi21555 9 35267220 to 35268415 1195 CpG island CpG island 21555
Tssr88731 9 35267746 to 35267786 40 - TSS region transcription start site region 88731
Tssr84333 9 35267857 to 35267894 37 + TSS region transcription start site region 84333
Rpusd4 9 35267881 to 35275957 8076 + protein coding gene RNA pseudouridylate synthase domain containing 4
Tssr84334 9 35279524 to 35279528 4 + TSS region transcription start site region 84334
4933422A05Rik 9 35281105 to 35285423 4318 + lincRNA gene RIKEN cDNA 4933422A05 gene
Gm5614 9 35281518 to 35281835 317 - pseudogene predicted gene 5614
Gm33838 9 35301722 to 35307599 5877 - lincRNA gene predicted gene, 33838
Cpgi21556 9 35305210 to 35305496 286 CpG island CpG island 21556
Tssr84335 9 35305216 to 35305239 23 + TSS region transcription start site region 84335
Tssr88732 9 35305237 to 35305266 29 - TSS region transcription start site region 88732
Tssr84336 9 35305266 to 35305290 24 + TSS region transcription start site region 84336
Tssr88733 9 35305297 to 35305325 28 - TSS region transcription start site region 88733
Tssr84337 9 35305315 to 35305335 20 + TSS region transcription start site region 84337
Tssr88734 9 35305354 to 35305365 11 - TSS region transcription start site region 88734
Tssr88735 9 35305366 to 35305371 5 - TSS region transcription start site region 88735
Tssr84338 9 35305375 to 35305390 15 + TSS region transcription start site region 84338
Tssr84339 9 35305428 to 35305468 40 + TSS region transcription start site region 84339
Tssr88736 9 35305429 to 35305449 20 - TSS region transcription start site region 88736
Tssr88737 9 35305455 to 35305491 36 - TSS region transcription start site region 88737
Tssr88738 9 35305582 to 35305595 13 - TSS region transcription start site region 88738
Gm33974 9 35317951 to 35320362 2411 + lncRNA gene predicted gene, 33974
Tssr84340 9 35354722 to 35354727 5 + TSS region transcription start site region 84340
2610105M22Rik 9 35361961 to 35363113 1152 - unclassified gene RIKEN cDNA 2610105M22 gene
Tssr84341 9 35364218 to 35364261 43 + TSS region transcription start site region 84341
D9Mit225 9 35369524 to 35369634 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 225
Cpgi21557 9 35420978 to 35422250 1272 CpG island CpG island 21557
Cdon 9 35421199 to 35507652 86453 + protein coding gene cell adhesion molecule-related/down-regulated by oncogenes
Tssr84342 9 35421541 to 35421616 75 + TSS region transcription start site region 84342
Tssr84343 9 35421625 to 35421637 12 + TSS region transcription start site region 84343
Tssr84344 9 35421643 to 35421681 38 + TSS region transcription start site region 84344
Tssr84345 9 35423391 to 35423407 16 + TSS region transcription start site region 84345
Tssr84346 9 35423582 to 35423589 7 + TSS region transcription start site region 84346
Tssr84347 9 35424875 to 35424888 13 + TSS region transcription start site region 84347
Tssr84348 9 35424919 to 35424940 21 + TSS region transcription start site region 84348
Tssr84349 9 35424958 to 35424984 26 + TSS region transcription start site region 84349
D9Mit127 9 35452182 to 35452326 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 127
Gm25630 9 35474885 to 35475046 161 + snRNA gene predicted gene, 25630
Gm24188 9 35503588 to 35503695 107 - rRNA gene predicted gene, 24188
Gm1113 9 35509222 to 35518269 9047 - protein coding gene predicted gene 1113
Ddx25 9 35541848 to 35558470 16622 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
Tssr88739 9 35544701 to 35544705 4 - TSS region transcription start site region 88739
Tssr88740 9 35546820 to 35546842 22 - TSS region transcription start site region 88740
Cpgi21558 9 35558171 to 35558853 682 CpG island CpG island 21558
Tssr88741 9 35558397 to 35558451 54 - TSS region transcription start site region 88741
Tssr88742 9 35558459 to 35558476 17 - TSS region transcription start site region 88742
Tssr88743 9 35558505 to 35558518 13 - TSS region transcription start site region 88743
Tssr88744 9 35558522 to 35558548 26 - TSS region transcription start site region 88744
Pus3 9 35558595 to 35567401 8806 + protein coding gene pseudouridine synthase 3
Cpgi21559 9 35559307 to 35559660 353 CpG island CpG island 21559
Tssr84350 9 35559460 to 35559493 33 + TSS region transcription start site region 84350
Hyls1 9 35560821 to 35570069 9248 - protein coding gene HYLS1, centriolar and ciliogenesis associated
Cpgi21560 9 35569584 to 35570601 1017 CpG island CpG island 21560
Tssr88745 9 35569740 to 35569748 8 - TSS region transcription start site region 88745
Tssr88746 9 35569751 to 35569761 10 - TSS region transcription start site region 88746
Tssr88747 9 35570019 to 35570073 54 - TSS region transcription start site region 88747
Tssr88748 9 35570088 to 35570121 33 - TSS region transcription start site region 88748
Tssr88749 9 35570393 to 35570402 9 - TSS region transcription start site region 88749
Tssr88750 9 35570403 to 35570420 17 - TSS region transcription start site region 88750
Tssr88751 9 35570422 to 35570440 18 - TSS region transcription start site region 88751
Tssr88752 9 35570443 to 35570450 7 - TSS region transcription start site region 88752
Tssr88753 9 35570475 to 35570476 1 - TSS region transcription start site region 88753
Gm6762 9 35574112 to 35574400 288 - pseudogene predicted pseudogene 6762
Cpgi21561 9 35574268 to 35574795 527 CpG island CpG island 21561
Gm10105 9 35589081 to 35589350 269 - pseudogene predicted pseudogene 10105
Pate4 9 35607093 to 35611885 4792 - protein coding gene prostate and testis expressed 4
Tssr2823 9 35608319 to 35608326 7 - TSS region transcription start site region 2823
Pate2 9 35611800 to 35672889 61089 + protein coding gene prostate and testis expressed 2
Tssr88754 9 35611861 to 35611878 17 - TSS region transcription start site region 88754
Tssr88755 9 35611915 to 35611918 3 - TSS region transcription start site region 88755
Tssr88756 9 35611987 to 35611995 8 - TSS region transcription start site region 88756
Tssr88757 9 35620804 to 35620807 3 - TSS region transcription start site region 88757