Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:34367802-35227806

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47858 9 34459181 to 34477056 17875 + lincRNA gene predicted gene, 47858
Cpgi21546 9 34485816 to 34486613 797 CpG island CpG island 21546
Kirrel3 9 34485848 to 35036315 550467 + protein coding gene kirre like nephrin family adhesion molecule 3
Cpgi21547 9 34488449 to 34489432 983 CpG island CpG island 21547
Tssr84316 9 34488721 to 34488745 24 + TSS region transcription start site region 84316
Tssr84317 9 34488787 to 34488807 20 + TSS region transcription start site region 84317
Tssr84318 9 34488821 to 34488835 14 + TSS region transcription start site region 84318
Gm38217 9 34521755 to 34522664 909 + unclassified gene predicted gene, 38217
Tssr84319 9 34546318 to 34546321 3 + TSS region transcription start site region 84319
Gm26662 9 34588526 to 34589304 778 - lincRNA gene predicted gene, 26662
Tssr88704 9 34589279 to 34589294 15 - TSS region transcription start site region 88704
Tssr88705 9 34589299 to 34589313 14 - TSS region transcription start site region 88705
Tssr84320 9 34636303 to 34636308 5 + TSS region transcription start site region 84320
Tssr84321 9 34647563 to 34647571 8 + TSS region transcription start site region 84321
Tssr84322 9 34686794 to 34686799 5 + TSS region transcription start site region 84322
Gm33777 9 34692095 to 34711952 19857 + lncRNA gene predicted gene, 33777
5330423I11Rik 9 34751328 to 34753246 1918 unclassified gene RIKEN cDNA 5330423I11 gene
Gm33613 9 34775339 to 34806226 30887 - lncRNA gene predicted gene, 33613
Tssr84323 9 34797802 to 34797806 4 + TSS region transcription start site region 84323
Gm33561 9 34823247 to 34854379 31132 - lncRNA gene predicted gene, 33561
Gm45955 9 34860082 to 34870544 10462 - lncRNA gene predicted gene, 45955
Kirrel3os 9 34918233 to 34929509 11276 - antisense lncRNA gene kirre like nephrin family adhesion molecule 3, opposite strand
Tlf 9 34926452 to 37395074 2468622 QTL T lymphocyte fraction
D9Mit66 9 34926452 to 34926575 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 66
Tssr88706 9 34948786 to 34948799 13 - TSS region transcription start site region 88706
Tssr2820 9 34948829 to 34948836 7 - TSS region transcription start site region 2820
Gm23702 9 34960019 to 34960148 129 + rRNA gene predicted gene, 23702
Tssr2821 9 35000441 to 35000446 5 + TSS region transcription start site region 2821
Tssr88707 9 35005776 to 35005818 42 - TSS region transcription start site region 88707
Cpgi21548 9 35017599 to 35017939 340 CpG island CpG island 21548
Cpgi21549 9 35034857 to 35035288 431 CpG island CpG island 21549
St3gal4 9 35046576 to 35116810 70234 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4
Tssr88708 9 35053740 to 35053744 4 - TSS region transcription start site region 88708
Tssr88709 9 35054102 to 35054131 29 - TSS region transcription start site region 88709
Tssr84324 9 35054233 to 35054238 5 + TSS region transcription start site region 84324
Tssr88710 9 35055658 to 35055669 11 - TSS region transcription start site region 88710
Tssr88711 9 35055785 to 35055808 23 - TSS region transcription start site region 88711
Tssr88712 9 35070353 to 35070358 5 - TSS region transcription start site region 88712
Tssr88713 9 35099046 to 35099057 11 - TSS region transcription start site region 88713
Tssr88714 9 35099062 to 35099078 16 - TSS region transcription start site region 88714
Tssr88715 9 35099080 to 35099087 7 - TSS region transcription start site region 88715
Tssr88716 9 35099108 to 35099119 11 - TSS region transcription start site region 88716
Cpgi21550 9 35116253 to 35117281 1028 CpG island CpG island 21550
4930581F22Rik 9 35116728 to 35130922 14194 + lncRNA gene RIKEN cDNA 4930581F22 gene
Tssr84325 9 35116740 to 35116767 27 + TSS region transcription start site region 84325
Tssr88717 9 35116760 to 35116793 33 - TSS region transcription start site region 88717
Tssr88718 9 35116804 to 35116891 87 - TSS region transcription start site region 88718
Tssr84326 9 35116930 to 35116946 16 + TSS region transcription start site region 84326
Tssr88719 9 35116975 to 35116986 11 - TSS region transcription start site region 88719
Tssr88720 9 35117694 to 35117757 63 - TSS region transcription start site region 88720
Tssr88721 9 35119135 to 35119144 9 - TSS region transcription start site region 88721
Tssr88722 9 35119190 to 35119212 22 - TSS region transcription start site region 88722
Dcps 9 35124414 to 35175987 51573 - protein coding gene decapping enzyme, scavenger
Tssr84327 9 35127865 to 35127876 11 + TSS region transcription start site region 84327
Gm24262 9 35144636 to 35144779 143 + snoRNA gene predicted gene, 24262
Cpgi21551 9 35175629 to 35176256 627 CpG island CpG island 21551
Tssr88723 9 35175971 to 35176021 50 - TSS region transcription start site region 88723
Tssr88724 9 35176039 to 35176051 12 - TSS region transcription start site region 88724
Tssr88725 9 35176052 to 35176055 3 - TSS region transcription start site region 88725
Tirap 9 35184551 to 35200291 15740 - protein coding gene toll-interleukin 1 receptor (TIR) domain-containing adaptor protein
Tssr88726 9 35185463 to 35185467 4 - TSS region transcription start site region 88726
Cpgi21552 9 35188730 to 35189190 460 CpG island CpG island 21552
Gm39318 9 35189986 to 35193924 3938 + antisense lncRNA gene predicted gene, 39318
Tssr2822 9 35194143 to 35194155 12 - TSS region transcription start site region 2822
Tssr88727 9 35194543 to 35194550 7 - TSS region transcription start site region 88727
Cpgi21553 9 35199531 to 35200293 762 CpG island CpG island 21553
Tssr88728 9 35199877 to 35199920 43 - TSS region transcription start site region 88728
Foxred1 9 35204208 to 35211055 6847 - protein coding gene FAD-dependent oxidoreductase domain containing 1
Cpgi21554 9 35210530 to 35211797 1267 CpG island CpG island 21554
Tssr88729 9 35210899 to 35210960 61 - TSS region transcription start site region 88729
Tssr88730 9 35210964 to 35210987 23 - TSS region transcription start site region 88730
Tssr84328 9 35211177 to 35211224 47 + TSS region transcription start site region 84328
Srpr 9 35211203 to 35217003 5800 + protein coding gene signal recognition particle receptor ('docking protein')
Tssr84329 9 35211229 to 35211248 19 + TSS region transcription start site region 84329
Tssr84330 9 35211253 to 35211264 11 + TSS region transcription start site region 84330
Tssr84331 9 35211289 to 35211301 12 + TSS region transcription start site region 84331
Tssr84332 9 35211421 to 35211454 33 + TSS region transcription start site region 84332
Fam118b 9 35216965 to 35267805 50840 - protein coding gene family with sequence similarity 118, member B