Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:34129279-35049294

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phdlc1 9 34193323 to 42853570 8660247 QTL plasma HDL cholesterol 1
D9Mit325 9 34193323 to 34193409 86 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 325
Gm27161 9 34200228 to 34200789 561 + pseudogene predicted gene 27161
Gm47858 9 34459181 to 34477056 17875 + lincRNA gene predicted gene, 47858
Cpgi21546 9 34485816 to 34486613 797 CpG island CpG island 21546
Kirrel3 9 34485848 to 35036315 550467 + protein coding gene kirre like nephrin family adhesion molecule 3
Cpgi21547 9 34488449 to 34489432 983 CpG island CpG island 21547
Tssr84316 9 34488721 to 34488745 24 + TSS region transcription start site region 84316
Tssr84317 9 34488787 to 34488807 20 + TSS region transcription start site region 84317
Tssr84318 9 34488821 to 34488835 14 + TSS region transcription start site region 84318
Gm38217 9 34521755 to 34522664 909 + unclassified gene predicted gene, 38217
Tssr84319 9 34546318 to 34546321 3 + TSS region transcription start site region 84319
Gm26662 9 34588526 to 34589304 778 - lincRNA gene predicted gene, 26662
Tssr88704 9 34589279 to 34589294 15 - TSS region transcription start site region 88704
Tssr88705 9 34589299 to 34589313 14 - TSS region transcription start site region 88705
Tssr84320 9 34636303 to 34636308 5 + TSS region transcription start site region 84320
Tssr84321 9 34647563 to 34647571 8 + TSS region transcription start site region 84321
Tssr84322 9 34686794 to 34686799 5 + TSS region transcription start site region 84322
Gm33777 9 34692095 to 34711952 19857 + lncRNA gene predicted gene, 33777
5330423I11Rik 9 34751328 to 34753246 1918 unclassified gene RIKEN cDNA 5330423I11 gene
Gm33613 9 34775339 to 34806226 30887 - lncRNA gene predicted gene, 33613
Tssr84323 9 34797802 to 34797806 4 + TSS region transcription start site region 84323
Gm33561 9 34823247 to 34854379 31132 - lncRNA gene predicted gene, 33561
Gm45955 9 34860082 to 34870544 10462 - lncRNA gene predicted gene, 45955
Kirrel3os 9 34918233 to 34929509 11276 - antisense lncRNA gene kirre like nephrin family adhesion molecule 3, opposite strand
Tlf 9 34926452 to 37395074 2468622 QTL T lymphocyte fraction
D9Mit66 9 34926452 to 34926575 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 66
Tssr88706 9 34948786 to 34948799 13 - TSS region transcription start site region 88706
Tssr2820 9 34948829 to 34948836 7 - TSS region transcription start site region 2820
Gm23702 9 34960019 to 34960148 129 + rRNA gene predicted gene, 23702
Tssr2821 9 35000441 to 35000446 5 + TSS region transcription start site region 2821
Tssr88707 9 35005776 to 35005818 42 - TSS region transcription start site region 88707
Cpgi21548 9 35017599 to 35017939 340 CpG island CpG island 21548
Cpgi21549 9 35034857 to 35035288 431 CpG island CpG island 21549
St3gal4 9 35046576 to 35116810 70234 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4