Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:3364833-5276732

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Alkbh8 9 3335231 to 3391154 55923 + protein coding gene alkB homolog 8, tRNA methyltransferase
Tssr83615 9 3372522 to 3372525 3 + TSS region transcription start site region 83615
Gm23275 9 3395439 to 3395542 103 + snRNA gene predicted gene, 23275
Cwf19l2 9 3403592 to 3479236 75644 + protein coding gene CWF19-like 2, cell cycle control (S. pombe)
Cpgi21331 9 3403873 to 3404175 302 CpG island CpG island 21331
Tssr83616 9 3404039 to 3404050 11 + TSS region transcription start site region 83616
Tssr83617 9 3404058 to 3404098 40 + TSS region transcription start site region 83617
Tssr83618 9 3416966 to 3416997 31 + TSS region transcription start site region 83618
Gm5362 9 3494379 to 3497463 3084 - pseudogene predicted gene 5362
Gm40506 9 3529135 to 3532818 3683 - lncRNA gene predicted gene, 40506
Cpgi21332 9 3531680 to 3533239 1559 CpG island CpG island 21332
Tssr83619 9 3532295 to 3532354 59 + TSS region transcription start site region 83619
Tssr83620 9 3532360 to 3532448 88 + TSS region transcription start site region 83620
Gucy1a2 9 3532778 to 3894736 361958 + protein coding gene guanylate cyclase 1, soluble, alpha 2
Tssr83621 9 3904162 to 3904180 18 + TSS region transcription start site region 83621
Tgq19 9 4060750 to 4060750 0 QTL triglyceride QTL 19
Gm45957 9 4138746 to 4182511 43765 + lncRNA gene predicted gene, 45957
Gm5363 9 4213922 to 4215941 2019 + pseudogene predicted gene 5363
Gm45860 9 4228796 to 4229129 333 - pseudogene predicted gene 45860
Tssr83622 9 4250954 to 4250958 4 + TSS region transcription start site region 83622
Cpgi21333 9 4260034 to 4260893 859 CpG island CpG island 21333
Gm22195 9 4271130 to 4271237 107 - miRNA gene predicted gene, 22195
Aasdhppt 9 4294793 to 4309471 14678 - protein coding gene aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
Cpgi21334 9 4309041 to 4310212 1171 CpG island CpG island 21334
Tssr88035 9 4309432 to 4309504 72 - TSS region transcription start site region 88035
Tssr88036 9 4309510 to 4309517 7 - TSS region transcription start site region 88036
Tssr83623 9 4309719 to 4309748 29 + TSS region transcription start site region 83623
Tssr83624 9 4309760 to 4309779 19 + TSS region transcription start site region 83624
Tssr83625 9 4309799 to 4309825 26 + TSS region transcription start site region 83625
Tssr83626 9 4309827 to 4309842 15 + TSS region transcription start site region 83626
Kbtbd3 9 4309833 to 4331732 21899 + protein coding gene kelch repeat and BTB (POZ) domain containing 3
Tssr83627 9 4309878 to 4309933 55 + TSS region transcription start site region 83627
Tssr83628 9 4313101 to 4313105 4 + TSS region transcription start site region 83628
Gm23992 9 4371269 to 4371335 66 - miRNA gene predicted gene, 23992
Cpgi21335 9 4376105 to 4376722 617 CpG island CpG island 21335
Tssr83629 9 4376533 to 4376600 67 + TSS region transcription start site region 83629
Msantd4 9 4376562 to 4386870 10308 + protein coding gene Myb/SANT-like DNA-binding domain containing 4 with coiled-coils
Gria4 9 4417896 to 4796234 378338 - protein coding gene glutamate receptor, ionotropic, AMPA4 (alpha 4)
Gm23811 9 4455940 to 4456023 83 - miRNA gene predicted gene, 23811
Tssr88037 9 4472210 to 4472228 18 - TSS region transcription start site region 88037
Tssr88038 9 4507961 to 4507965 4 - TSS region transcription start site region 88038
Gm46101 9 4513388 to 4532927 19539 + lncRNA gene predicted gene, 46101
Tssr88039 9 4635267 to 4635271 4 - TSS region transcription start site region 88039
Tssr88040 9 4765243 to 4765247 4 - TSS region transcription start site region 88040
Cpgi21336 9 4795545 to 4796457 912 CpG island CpG island 21336
Tssr88041 9 4795561 to 4795644 83 - TSS region transcription start site region 88041
Tssr88042 9 4795914 to 4795928 14 - TSS region transcription start site region 88042
Tssr88043 9 4795951 to 4795964 13 - TSS region transcription start site region 88043
Tssr88044 9 4795969 to 4795987 18 - TSS region transcription start site region 88044
Tssr88045 9 4796022 to 4796033 11 - TSS region transcription start site region 88045
Tssr88046 9 4796034 to 4796066 32 - TSS region transcription start site region 88046
Tssr88047 9 4796070 to 4796081 11 - TSS region transcription start site region 88047
Tssr88048 9 4796141 to 4796159 18 - TSS region transcription start site region 88048
Tssr88049 9 4796160 to 4796195 35 - TSS region transcription start site region 88049
Tssr88050 9 4796196 to 4796216 20 - TSS region transcription start site region 88050
Tssr88051 9 4796218 to 4796267 49 - TSS region transcription start site region 88051
Gm46100 9 4796337 to 4800157 3820 + lncRNA gene predicted gene, 46100
Cpgi21337 9 4977605 to 4977809 204 CpG island CpG island 21337
Gm7390 9 4977959 to 4979174 1215 + pseudogene predicted gene 7390
Gm24896 9 5111399 to 5111533 134 + snoRNA gene predicted gene, 24896
Gm40508 9 5127223 to 5155287 28064 + lncRNA gene predicted gene, 40508
Gm31429 9 5157038 to 5166906 9868 + lncRNA gene predicted gene, 31429
Gm31492 9 5159386 to 5171522 12136 - lncRNA gene predicted gene, 31492