Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:32829767-41834429

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1015 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igan3 9 30503398 to 40654618 10151220 QTL IgA nephropathy 3
Elnv 9 31360262 to 37395074 6034812 QTL epilepsy naive
Gm3331 9 32813734 to 32834104 20370 + lincRNA gene predicted gene 3331
Pdcc3 9 32838331 to 32838331 0 QTL plasmacytoid dentritic cell compartment 3
Adq1 9 32838331 to 32838331 0 QTL aortic diameter QTL 1
Adq2 9 32838331 to 32838331 0 QTL aortic diameter QTL 2
Gm37167 9 32839527 to 32839922 395 - unclassified gene predicted gene, 37167
Tssr88697 9 32901446 to 32901452 6 - TSS region transcription start site region 88697
Gm27162 9 32904937 to 32928966 24029 - lincRNA gene predicted gene 27162
Tssr84304 9 32906557 to 32906568 11 + TSS region transcription start site region 84304
Tssr84305 9 32906589 to 32906598 9 + TSS region transcription start site region 84305
Tssr84306 9 32910922 to 32910933 11 + TSS region transcription start site region 84306
Tssr84307 9 32913059 to 32913066 7 + TSS region transcription start site region 84307
Tssr88698 9 32915633 to 32915639 6 - TSS region transcription start site region 88698
Tssr88699 9 32915655 to 32915668 13 - TSS region transcription start site region 88699
Tssr84308 9 32915971 to 32916003 32 + TSS region transcription start site region 84308
Tssr88700 9 32924484 to 32924515 31 - TSS region transcription start site region 88700
Tssr84309 9 32926400 to 32926420 20 + TSS region transcription start site region 84309
Tssr84310 9 32926511 to 32926525 14 + TSS region transcription start site region 84310
Tssr84311 9 32926605 to 32926620 15 + TSS region transcription start site region 84311
Tssr88701 9 32928329 to 32928354 25 - TSS region transcription start site region 88701
Tssr84312 9 32928714 to 32928720 6 + TSS region transcription start site region 84312
Tssr88702 9 32928928 to 32928932 4 - TSS region transcription start site region 88702
Tssr88703 9 32959605 to 32959613 8 - TSS region transcription start site region 88703
Tssr84313 9 32963053 to 32963079 26 + TSS region transcription start site region 84313
Gm37192 9 32971037 to 32972384 1347 + unclassified gene predicted gene, 37192
Gm27166 9 33031791 to 33090799 59008 + lincRNA gene predicted gene 27166
V125Dq7 9 33100000 to 33100000 0 QTL vitamin D active form serum level QTL 7
V125Dq8 9 33100000 to 33100000 0 QTL vitamin D active form serum level QTL 8
Gm37758 9 33160062 to 33160690 628 - unclassified gene predicted gene, 37758
Gm32171 9 33254462 to 33262518 8056 + lincRNA gene predicted gene, 32171
Gm47775 9 33296244 to 33308803 12559 + lincRNA gene predicted gene, 47775
Cpgi21545 9 33359998 to 33360156 158 CpG island CpG island 21545
Gm47777 9 33482183 to 33492014 9831 - lincRNA gene predicted gene, 47777
Gm47778 9 33597365 to 33600468 3103 + lincRNA gene predicted gene, 47778
Tssr84314 9 33728157 to 33728159 2 + TSS region transcription start site region 84314
Tmed2b 9 33728165 to 33729412 1247 + protein coding gene transmembrane p24 trafficking protein 2B
Gm10698 9 33728247 to 33728850 603 + pseudogene predicted gene 10698
Tssr84315 9 33728400 to 33728419 19 + TSS region transcription start site region 84315
Hdlq109 9 33798345 to 33798345 0 QTL HDL QTL 109
Gm47784 9 33861203 to 33864019 2816 + lincRNA gene predicted gene, 47784
Tssr2819 9 33867941 to 33867945 4 + TSS region transcription start site region 2819
Gm47785 9 33901917 to 33921449 19532 + lincRNA gene predicted gene, 47785
Gm25439 9 33917492 to 33917622 130 + snoRNA gene predicted gene, 25439
Gm27165 9 33931644 to 33931875 231 + pseudogene predicted gene 27165
Gm27164 9 33942310 to 34007173 64863 + lincRNA gene predicted gene 27164
Gm32359 9 34003957 to 34029898 25941 - lncRNA gene predicted gene, 32359
7630403G23Rik 9 34042371 to 34059019 16648 + lincRNA gene RIKEN cDNA 7630403G23 gene
Ibdq1 9 34067544 to 73531973 39464429 QTL inflammatory bowel disease QTL 1
Vtbt6 9 34067544 to 34067647 103 QTL vertebral trabecular bone trait 6
D9Mit297 9 34067544 to 34067647 103 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 297
D9Mit325 9 34193323 to 34193409 86 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 325
Phdlc1 9 34193323 to 42853570 8660247 QTL plasma HDL cholesterol 1
Gm27161 9 34200228 to 34200789 561 + pseudogene predicted gene 27161
Gm47858 9 34459181 to 34477056 17875 + lincRNA gene predicted gene, 47858
Cpgi21546 9 34485816 to 34486613 797 CpG island CpG island 21546
Kirrel3 9 34485848 to 35036315 550467 + protein coding gene kirre like nephrin family adhesion molecule 3
Cpgi21547 9 34488449 to 34489432 983 CpG island CpG island 21547
Tssr84316 9 34488721 to 34488745 24 + TSS region transcription start site region 84316
Tssr84317 9 34488787 to 34488807 20 + TSS region transcription start site region 84317
Tssr84318 9 34488821 to 34488835 14 + TSS region transcription start site region 84318
Gm38217 9 34521755 to 34522664 909 + unclassified gene predicted gene, 38217
Tssr84319 9 34546318 to 34546321 3 + TSS region transcription start site region 84319
Gm26662 9 34588526 to 34589304 778 - lincRNA gene predicted gene, 26662
Tssr88704 9 34589279 to 34589294 15 - TSS region transcription start site region 88704
Tssr88705 9 34589299 to 34589313 14 - TSS region transcription start site region 88705
Tssr84320 9 34636303 to 34636308 5 + TSS region transcription start site region 84320
Tssr84321 9 34647563 to 34647571 8 + TSS region transcription start site region 84321
Tssr84322 9 34686794 to 34686799 5 + TSS region transcription start site region 84322
Gm33777 9 34692095 to 34711952 19857 + lncRNA gene predicted gene, 33777
5330423I11Rik 9 34751328 to 34753246 1918 unclassified gene RIKEN cDNA 5330423I11 gene
Gm33613 9 34775339 to 34806226 30887 - lncRNA gene predicted gene, 33613
Tssr84323 9 34797802 to 34797806 4 + TSS region transcription start site region 84323
Gm33561 9 34823247 to 34854379 31132 - lncRNA gene predicted gene, 33561
Gm45955 9 34860082 to 34870544 10462 - lncRNA gene predicted gene, 45955
Kirrel3os 9 34918233 to 34929509 11276 - antisense lncRNA gene kirre like nephrin family adhesion molecule 3, opposite strand
Tlf 9 34926452 to 37395074 2468622 QTL T lymphocyte fraction
D9Mit66 9 34926452 to 34926575 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 66
Tssr88706 9 34948786 to 34948799 13 - TSS region transcription start site region 88706
Tssr2820 9 34948829 to 34948836 7 - TSS region transcription start site region 2820
Gm23702 9 34960019 to 34960148 129 + rRNA gene predicted gene, 23702
Tssr2821 9 35000441 to 35000446 5 + TSS region transcription start site region 2821
Tssr88707 9 35005776 to 35005818 42 - TSS region transcription start site region 88707
Cpgi21548 9 35017599 to 35017939 340 CpG island CpG island 21548
Cpgi21549 9 35034857 to 35035288 431 CpG island CpG island 21549
St3gal4 9 35046576 to 35116810 70234 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4
Tssr88708 9 35053740 to 35053744 4 - TSS region transcription start site region 88708
Tssr88709 9 35054102 to 35054131 29 - TSS region transcription start site region 88709
Tssr84324 9 35054233 to 35054238 5 + TSS region transcription start site region 84324
Tssr88710 9 35055658 to 35055669 11 - TSS region transcription start site region 88710
Tssr88711 9 35055785 to 35055808 23 - TSS region transcription start site region 88711
Tssr88712 9 35070353 to 35070358 5 - TSS region transcription start site region 88712
Tssr88713 9 35099046 to 35099057 11 - TSS region transcription start site region 88713
Tssr88714 9 35099062 to 35099078 16 - TSS region transcription start site region 88714
Tssr88715 9 35099080 to 35099087 7 - TSS region transcription start site region 88715
Tssr88716 9 35099108 to 35099119 11 - TSS region transcription start site region 88716
Cpgi21550 9 35116253 to 35117281 1028 CpG island CpG island 21550
4930581F22Rik 9 35116728 to 35130922 14194 + lncRNA gene RIKEN cDNA 4930581F22 gene
Tssr84325 9 35116740 to 35116767 27 + TSS region transcription start site region 84325
Tssr88717 9 35116760 to 35116793 33 - TSS region transcription start site region 88717
Tssr88718 9 35116804 to 35116891 87 - TSS region transcription start site region 88718
Tssr84326 9 35116930 to 35116946 16 + TSS region transcription start site region 84326
Tssr88719 9 35116975 to 35116986 11 - TSS region transcription start site region 88719
Tssr88720 9 35117694 to 35117757 63 - TSS region transcription start site region 88720
Tssr88721 9 35119135 to 35119144 9 - TSS region transcription start site region 88721
Tssr88722 9 35119190 to 35119212 22 - TSS region transcription start site region 88722
Dcps 9 35124414 to 35175987 51573 - protein coding gene decapping enzyme, scavenger
Tssr84327 9 35127865 to 35127876 11 + TSS region transcription start site region 84327
Gm24262 9 35144636 to 35144779 143 + snoRNA gene predicted gene, 24262
Cpgi21551 9 35175629 to 35176256 627 CpG island CpG island 21551
Tssr88723 9 35175971 to 35176021 50 - TSS region transcription start site region 88723
Tssr88724 9 35176039 to 35176051 12 - TSS region transcription start site region 88724
Tssr88725 9 35176052 to 35176055 3 - TSS region transcription start site region 88725
Tirap 9 35184551 to 35200291 15740 - protein coding gene toll-interleukin 1 receptor (TIR) domain-containing adaptor protein
Tssr88726 9 35185463 to 35185467 4 - TSS region transcription start site region 88726
Cpgi21552 9 35188730 to 35189190 460 CpG island CpG island 21552
Gm39318 9 35189986 to 35193924 3938 + antisense lncRNA gene predicted gene, 39318
Tssr2822 9 35194143 to 35194155 12 - TSS region transcription start site region 2822
Tssr88727 9 35194543 to 35194550 7 - TSS region transcription start site region 88727
Cpgi21553 9 35199531 to 35200293 762 CpG island CpG island 21553
Tssr88728 9 35199877 to 35199920 43 - TSS region transcription start site region 88728
Foxred1 9 35204208 to 35211055 6847 - protein coding gene FAD-dependent oxidoreductase domain containing 1
Cpgi21554 9 35210530 to 35211797 1267 CpG island CpG island 21554
Tssr88729 9 35210899 to 35210960 61 - TSS region transcription start site region 88729
Tssr88730 9 35210964 to 35210987 23 - TSS region transcription start site region 88730
Tssr84328 9 35211177 to 35211224 47 + TSS region transcription start site region 84328
Srpr 9 35211203 to 35217003 5800 + protein coding gene signal recognition particle receptor ('docking protein')
Tssr84329 9 35211229 to 35211248 19 + TSS region transcription start site region 84329
Tssr84330 9 35211253 to 35211264 11 + TSS region transcription start site region 84330
Tssr84331 9 35211289 to 35211301 12 + TSS region transcription start site region 84331
Tssr84332 9 35211421 to 35211454 33 + TSS region transcription start site region 84332
Fam118b 9 35216965 to 35267805 50840 - protein coding gene family with sequence similarity 118, member B
Cpgi21555 9 35267220 to 35268415 1195 CpG island CpG island 21555
Tssr88731 9 35267746 to 35267786 40 - TSS region transcription start site region 88731
Tssr84333 9 35267857 to 35267894 37 + TSS region transcription start site region 84333
Rpusd4 9 35267881 to 35275957 8076 + protein coding gene RNA pseudouridylate synthase domain containing 4
Tssr84334 9 35279524 to 35279528 4 + TSS region transcription start site region 84334
4933422A05Rik 9 35281105 to 35285423 4318 + lincRNA gene RIKEN cDNA 4933422A05 gene
Gm5614 9 35281518 to 35281835 317 - pseudogene predicted gene 5614
Gm33838 9 35301722 to 35307599 5877 - lincRNA gene predicted gene, 33838
Cpgi21556 9 35305210 to 35305496 286 CpG island CpG island 21556
Tssr84335 9 35305216 to 35305239 23 + TSS region transcription start site region 84335
Tssr88732 9 35305237 to 35305266 29 - TSS region transcription start site region 88732
Tssr84336 9 35305266 to 35305290 24 + TSS region transcription start site region 84336
Tssr88733 9 35305297 to 35305325 28 - TSS region transcription start site region 88733
Tssr84337 9 35305315 to 35305335 20 + TSS region transcription start site region 84337
Tssr88734 9 35305354 to 35305365 11 - TSS region transcription start site region 88734
Tssr88735 9 35305366 to 35305371 5 - TSS region transcription start site region 88735
Tssr84338 9 35305375 to 35305390 15 + TSS region transcription start site region 84338
Tssr84339 9 35305428 to 35305468 40 + TSS region transcription start site region 84339
Tssr88736 9 35305429 to 35305449 20 - TSS region transcription start site region 88736
Tssr88737 9 35305455 to 35305491 36 - TSS region transcription start site region 88737
Tssr88738 9 35305582 to 35305595 13 - TSS region transcription start site region 88738
Gm33974 9 35317951 to 35320362 2411 + lncRNA gene predicted gene, 33974
Tssr84340 9 35354722 to 35354727 5 + TSS region transcription start site region 84340
2610105M22Rik 9 35361961 to 35363113 1152 - unclassified gene RIKEN cDNA 2610105M22 gene
Tssr84341 9 35364218 to 35364261 43 + TSS region transcription start site region 84341
D9Mit225 9 35369524 to 35369634 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 225
Cpgi21557 9 35420978 to 35422250 1272 CpG island CpG island 21557
Cdon 9 35421199 to 35507652 86453 + protein coding gene cell adhesion molecule-related/down-regulated by oncogenes
Tssr84342 9 35421541 to 35421616 75 + TSS region transcription start site region 84342
Tssr84343 9 35421625 to 35421637 12 + TSS region transcription start site region 84343
Tssr84344 9 35421643 to 35421681 38 + TSS region transcription start site region 84344
Tssr84345 9 35423391 to 35423407 16 + TSS region transcription start site region 84345
Tssr84346 9 35423582 to 35423589 7 + TSS region transcription start site region 84346
Tssr84347 9 35424875 to 35424888 13 + TSS region transcription start site region 84347
Tssr84348 9 35424919 to 35424940 21 + TSS region transcription start site region 84348
Tssr84349 9 35424958 to 35424984 26 + TSS region transcription start site region 84349
D9Mit127 9 35452182 to 35452326 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 127
Gm25630 9 35474885 to 35475046 161 + snRNA gene predicted gene, 25630
Gm24188 9 35503588 to 35503695 107 - rRNA gene predicted gene, 24188
Gm1113 9 35509222 to 35518269 9047 - protein coding gene predicted gene 1113
Ddx25 9 35541848 to 35558470 16622 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 25
Tssr88739 9 35544701 to 35544705 4 - TSS region transcription start site region 88739
Tssr88740 9 35546820 to 35546842 22 - TSS region transcription start site region 88740
Cpgi21558 9 35558171 to 35558853 682 CpG island CpG island 21558
Tssr88741 9 35558397 to 35558451 54 - TSS region transcription start site region 88741
Tssr88742 9 35558459 to 35558476 17 - TSS region transcription start site region 88742
Tssr88743 9 35558505 to 35558518 13 - TSS region transcription start site region 88743
Tssr88744 9 35558522 to 35558548 26 - TSS region transcription start site region 88744
Pus3 9 35558595 to 35567401 8806 + protein coding gene pseudouridine synthase 3
Cpgi21559 9 35559307 to 35559660 353 CpG island CpG island 21559
Tssr84350 9 35559460 to 35559493 33 + TSS region transcription start site region 84350
Hyls1 9 35560821 to 35570069 9248 - protein coding gene HYLS1, centriolar and ciliogenesis associated
Cpgi21560 9 35569584 to 35570601 1017 CpG island CpG island 21560
Tssr88745 9 35569740 to 35569748 8 - TSS region transcription start site region 88745
Tssr88746 9 35569751 to 35569761 10 - TSS region transcription start site region 88746
Tssr88747 9 35570019 to 35570073 54 - TSS region transcription start site region 88747
Tssr88748 9 35570088 to 35570121 33 - TSS region transcription start site region 88748
Tssr88749 9 35570393 to 35570402 9 - TSS region transcription start site region 88749
Tssr88750 9 35570403 to 35570420 17 - TSS region transcription start site region 88750
Tssr88751 9 35570422 to 35570440 18 - TSS region transcription start site region 88751
Tssr88752 9 35570443 to 35570450 7 - TSS region transcription start site region 88752
Tssr88753 9 35570475 to 35570476 1 - TSS region transcription start site region 88753
Gm6762 9 35574112 to 35574400 288 - pseudogene predicted pseudogene 6762
Cpgi21561 9 35574268 to 35574795 527 CpG island CpG island 21561
Gm10105 9 35589081 to 35589350 269 - pseudogene predicted pseudogene 10105
Pate4 9 35607093 to 35611885 4792 - protein coding gene prostate and testis expressed 4
Tssr2823 9 35608319 to 35608326 7 - TSS region transcription start site region 2823
Pate2 9 35611800 to 35672889 61089 + protein coding gene prostate and testis expressed 2