Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:32425353-37715358

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608 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Elnv 9 31360262 to 37395074 6034812 QTL epilepsy naive
Fli1 9 32422204 to 32542861 120657 - protein coding gene Friend leukemia integration 1
Tssr88668 9 32429703 to 32429706 3 - TSS region transcription start site region 88668
Gm22060 9 32446822 to 32446928 106 - snRNA gene predicted gene, 22060
Tssr88669 9 32451378 to 32451385 7 - TSS region transcription start site region 88669
Tssr88670 9 32451399 to 32451416 17 - TSS region transcription start site region 88670
Tssr88671 9 32451456 to 32451466 10 - TSS region transcription start site region 88671
Tssr88672 9 32452045 to 32452061 16 - TSS region transcription start site region 88672
Tssr88673 9 32452123 to 32452136 13 - TSS region transcription start site region 88673
Gm38292 9 32477333 to 32480377 3044 - unclassified gene predicted gene, 38292
Tssr88674 9 32486330 to 32486354 24 - TSS region transcription start site region 88674
Tssr88675 9 32492160 to 32492164 4 - TSS region transcription start site region 88675
Cfmq2 9 32500455 to 32500594 139 QTL cystic fibrosis modifier QTL 2
Lgth4 9 32500455 to 32500594 139 QTL body length 4
D9Mit90 9 32500455 to 32500594 139 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 90
Cq4 9 32500455 to 32500594 139 QTL cholesterol QTL 4
Si5lq2 9 32500455 to 32500594 139 QTL serum IGFBP-5 level QTL 2
Tssr84256 9 32501295 to 32501305 10 + TSS region transcription start site region 84256
Tssr88676 9 32502522 to 32502534 12 - TSS region transcription start site region 88676
Tssr84257 9 32504329 to 32504334 5 + TSS region transcription start site region 84257
Gm38346 9 32507745 to 32510383 2638 - unclassified gene predicted gene, 38346
Tssr84258 9 32508401 to 32508432 31 + TSS region transcription start site region 84258
Gm27201 9 32508413 to 32516958 8545 + antisense lncRNA gene predicted gene 27201
Tssr88677 9 32515050 to 32515053 3 - TSS region transcription start site region 88677
Tssr88678 9 32524506 to 32524510 4 - TSS region transcription start site region 88678
Gm37474 9 32525145 to 32526958 1813 - unclassified gene predicted gene, 37474
Tssr88679 9 32526937 to 32526941 4 - TSS region transcription start site region 88679
Gm37082 9 32535251 to 32537177 1926 - unclassified gene predicted gene, 37082
Cpgi21540 9 32540365 to 32541720 1355 CpG island CpG island 21540
Tssr88680 9 32541321 to 32541335 14 - TSS region transcription start site region 88680
Tssr88681 9 32541345 to 32541350 5 - TSS region transcription start site region 88681
Tssr88682 9 32541358 to 32541416 58 - TSS region transcription start site region 88682
Tssr88683 9 32541424 to 32541431 7 - TSS region transcription start site region 88683
Tssr88684 9 32541466 to 32541476 10 - TSS region transcription start site region 88684
Tssr88685 9 32541589 to 32541602 13 - TSS region transcription start site region 88685
Tssr84259 9 32541612 to 32541656 44 + TSS region transcription start site region 84259
Tssr88686 9 32541655 to 32541691 36 - TSS region transcription start site region 88686
Cpgi21541 9 32542145 to 32542910 765 CpG island CpG island 21541
Tssr88687 9 32542986 to 32543008 22 - TSS region transcription start site region 88687
Cpgi21542 9 32545384 to 32545701 317 CpG island CpG island 21542
Tssr88688 9 32549507 to 32549529 22 - TSS region transcription start site region 88688
Gm31871 9 32594496 to 32607083 12587 + lncRNA gene predicted gene, 31871
Tssr84260 9 32594745 to 32594747 2 + TSS region transcription start site region 84260
Tssr88689 9 32608979 to 32609001 22 - TSS region transcription start site region 88689
Gm47680 9 32613452 to 32629557 16105 + lincRNA gene predicted gene, 47680
Tssr88690 9 32615943 to 32615948 5 - TSS region transcription start site region 88690
Tssr84261 9 32616262 to 32616290 28 + TSS region transcription start site region 84261
Tssr84262 9 32617690 to 32617711 21 + TSS region transcription start site region 84262
Tssr2818 9 32620946 to 32620949 3 + TSS region transcription start site region 2818
Gm27163 9 32629125 to 32629533 408 + pseudogene predicted gene 27163
Gm31928 9 32630187 to 32632823 2636 + lncRNA gene predicted gene, 31928
Tssr84263 9 32636210 to 32636221 11 + TSS region transcription start site region 84263
Ets1 9 32636221 to 32757820 121599 + protein coding gene E26 avian leukemia oncogene 1, 5' domain
Tssr84264 9 32636233 to 32636269 36 + TSS region transcription start site region 84264
Tssr84265 9 32652465 to 32652485 20 + TSS region transcription start site region 84265
Tssr84266 9 32652502 to 32652510 8 + TSS region transcription start site region 84266
Cpgi21543 9 32672132 to 32672346 214 CpG island CpG island 21543
Tssr84267 9 32679745 to 32679755 10 + TSS region transcription start site region 84267
Tssr84268 9 32679766 to 32679782 16 + TSS region transcription start site region 84268
Tssr84269 9 32681458 to 32681461 3 + TSS region transcription start site region 84269
Cpgi21544 9 32695478 to 32696544 1066 CpG island CpG island 21544
Tssr84270 9 32695678 to 32695686 8 + TSS region transcription start site region 84270
Tssr84271 9 32695692 to 32695705 13 + TSS region transcription start site region 84271
Tssr84272 9 32695715 to 32695719 4 + TSS region transcription start site region 84272
Tssr84273 9 32695751 to 32695775 24 + TSS region transcription start site region 84273
Tssr84274 9 32695806 to 32695816 10 + TSS region transcription start site region 84274
Tssr84275 9 32696005 to 32696095 90 + TSS region transcription start site region 84275
Tssr84276 9 32696865 to 32696876 11 + TSS region transcription start site region 84276
Tssr84277 9 32696986 to 32697011 25 + TSS region transcription start site region 84277
Tssr84278 9 32697927 to 32697939 12 + TSS region transcription start site region 84278
Tssr84279 9 32698247 to 32698274 27 + TSS region transcription start site region 84279
Tssr84280 9 32699410 to 32699423 13 + TSS region transcription start site region 84280
Tssr84281 9 32699811 to 32699821 10 + TSS region transcription start site region 84281
Tssr84282 9 32699890 to 32699897 7 + TSS region transcription start site region 84282
Tssr84283 9 32700270 to 32700298 28 + TSS region transcription start site region 84283
Tssr88691 9 32701187 to 32701192 5 - TSS region transcription start site region 88691
Tssr84284 9 32701292 to 32701312 20 + TSS region transcription start site region 84284
Tssr88692 9 32702878 to 32702894 16 - TSS region transcription start site region 88692
Tssr84285 9 32704174 to 32704185 11 + TSS region transcription start site region 84285
Tssr84286 9 32705129 to 32705135 6 + TSS region transcription start site region 84286
Tssr88693 9 32706328 to 32706350 22 - TSS region transcription start site region 88693
Gm27240 9 32709652 to 32711171 1519 - antisense lncRNA gene predicted gene 27240
Tssr84287 9 32716759 to 32716761 2 + TSS region transcription start site region 84287
Tssr88694 9 32718108 to 32718113 5 - TSS region transcription start site region 88694
Tssr84288 9 32723386 to 32723391 5 + TSS region transcription start site region 84288
Tssr84289 9 32726745 to 32726750 5 + TSS region transcription start site region 84289
Tssr84290 9 32728560 to 32728595 35 + TSS region transcription start site region 84290
Tssr84291 9 32728601 to 32728608 7 + TSS region transcription start site region 84291
Tssr88695 9 32731926 to 32731937 11 - TSS region transcription start site region 88695
Tssr84292 9 32732147 to 32732165 18 + TSS region transcription start site region 84292
Tssr84293 9 32732185 to 32732193 8 + TSS region transcription start site region 84293
Tssr84294 9 32737725 to 32737730 5 + TSS region transcription start site region 84294
Tssr84295 9 32740034 to 32740038 4 + TSS region transcription start site region 84295
Tssr84296 9 32743940 to 32743949 9 + TSS region transcription start site region 84296
Tssr84297 9 32745307 to 32745310 3 + TSS region transcription start site region 84297
Tssr84298 9 32745383 to 32745416 33 + TSS region transcription start site region 84298
Tssr88696 9 32747599 to 32747612 13 - TSS region transcription start site region 88696
Tssr84299 9 32747926 to 32747943 17 + TSS region transcription start site region 84299
Tssr84300 9 32752851 to 32752860 9 + TSS region transcription start site region 84300
Tssr84301 9 32754457 to 32754461 4 + TSS region transcription start site region 84301
Tssr84302 9 32754646 to 32754650 4 + TSS region transcription start site region 84302
Tssr84303 9 32754760 to 32754766 6 + TSS region transcription start site region 84303
Gm3331 9 32813734 to 32834104 20370 + lincRNA gene predicted gene 3331
Pdcc3 9 32838331 to 32838331 0 QTL plasmacytoid dentritic cell compartment 3
Adq2 9 32838331 to 32838331 0 QTL aortic diameter QTL 2
Adq1 9 32838331 to 32838331 0 QTL aortic diameter QTL 1
Gm37167 9 32839527 to 32839922 395 - unclassified gene predicted gene, 37167
Tssr88697 9 32901446 to 32901452 6 - TSS region transcription start site region 88697
Gm27162 9 32904937 to 32928966 24029 - lincRNA gene predicted gene 27162
Tssr84304 9 32906557 to 32906568 11 + TSS region transcription start site region 84304
Tssr84305 9 32906589 to 32906598 9 + TSS region transcription start site region 84305
Tssr84306 9 32910922 to 32910933 11 + TSS region transcription start site region 84306
Tssr84307 9 32913059 to 32913066 7 + TSS region transcription start site region 84307
Tssr88698 9 32915633 to 32915639 6 - TSS region transcription start site region 88698
Tssr88699 9 32915655 to 32915668 13 - TSS region transcription start site region 88699
Tssr84308 9 32915971 to 32916003 32 + TSS region transcription start site region 84308
Tssr88700 9 32924484 to 32924515 31 - TSS region transcription start site region 88700
Tssr84309 9 32926400 to 32926420 20 + TSS region transcription start site region 84309
Tssr84310 9 32926511 to 32926525 14 + TSS region transcription start site region 84310
Tssr84311 9 32926605 to 32926620 15 + TSS region transcription start site region 84311
Tssr88701 9 32928329 to 32928354 25 - TSS region transcription start site region 88701
Tssr84312 9 32928714 to 32928720 6 + TSS region transcription start site region 84312
Tssr88702 9 32928928 to 32928932 4 - TSS region transcription start site region 88702
Tssr88703 9 32959605 to 32959613 8 - TSS region transcription start site region 88703
Tssr84313 9 32963053 to 32963079 26 + TSS region transcription start site region 84313
Gm37192 9 32971037 to 32972384 1347 + unclassified gene predicted gene, 37192
Gm27166 9 33031791 to 33090799 59008 + lincRNA gene predicted gene 27166
V125Dq8 9 33100000 to 33100000 0 QTL vitamin D active form serum level QTL 8
V125Dq7 9 33100000 to 33100000 0 QTL vitamin D active form serum level QTL 7
Gm37758 9 33160062 to 33160690 628 - unclassified gene predicted gene, 37758
Gm32171 9 33254462 to 33262518 8056 + lincRNA gene predicted gene, 32171
Gm47775 9 33296244 to 33308803 12559 + lincRNA gene predicted gene, 47775
Cpgi21545 9 33359998 to 33360156 158 CpG island CpG island 21545
Gm47777 9 33482183 to 33492014 9831 - lincRNA gene predicted gene, 47777
Gm47778 9 33597365 to 33600468 3103 + lincRNA gene predicted gene, 47778
Tssr84314 9 33728157 to 33728159 2 + TSS region transcription start site region 84314
Tmed2b 9 33728165 to 33729412 1247 + protein coding gene transmembrane p24 trafficking protein 2B
Gm10698 9 33728247 to 33728850 603 + pseudogene predicted gene 10698
Tssr84315 9 33728400 to 33728419 19 + TSS region transcription start site region 84315
Hdlq109 9 33798345 to 33798345 0 QTL HDL QTL 109
Gm47784 9 33861203 to 33864019 2816 + lincRNA gene predicted gene, 47784
Tssr2819 9 33867941 to 33867945 4 + TSS region transcription start site region 2819
Gm47785 9 33901917 to 33921449 19532 + lincRNA gene predicted gene, 47785
Gm25439 9 33917492 to 33917622 130 + snoRNA gene predicted gene, 25439
Gm27165 9 33931644 to 33931875 231 + pseudogene predicted gene 27165
Gm27164 9 33942310 to 34007173 64863 + lincRNA gene predicted gene 27164
Gm32359 9 34003957 to 34029898 25941 - lncRNA gene predicted gene, 32359
7630403G23Rik 9 34042371 to 34059019 16648 + lincRNA gene RIKEN cDNA 7630403G23 gene
Ibdq1 9 34067544 to 73531973 39464429 QTL inflammatory bowel disease QTL 1
D9Mit297 9 34067544 to 34067647 103 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 297
Vtbt6 9 34067544 to 34067647 103 QTL vertebral trabecular bone trait 6
Phdlc1 9 34193323 to 42853570 8660247 QTL plasma HDL cholesterol 1
D9Mit325 9 34193323 to 34193409 86 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 325
Gm27161 9 34200228 to 34200789 561 + pseudogene predicted gene 27161
Gm47858 9 34459181 to 34477056 17875 + lincRNA gene predicted gene, 47858
Cpgi21546 9 34485816 to 34486613 797 CpG island CpG island 21546
Kirrel3 9 34485848 to 35036315 550467 + protein coding gene kirre like nephrin family adhesion molecule 3
Cpgi21547 9 34488449 to 34489432 983 CpG island CpG island 21547
Tssr84316 9 34488721 to 34488745 24 + TSS region transcription start site region 84316
Tssr84317 9 34488787 to 34488807 20 + TSS region transcription start site region 84317
Tssr84318 9 34488821 to 34488835 14 + TSS region transcription start site region 84318
Gm38217 9 34521755 to 34522664 909 + unclassified gene predicted gene, 38217
Tssr84319 9 34546318 to 34546321 3 + TSS region transcription start site region 84319
Gm26662 9 34588526 to 34589304 778 - lincRNA gene predicted gene, 26662
Tssr88704 9 34589279 to 34589294 15 - TSS region transcription start site region 88704
Tssr88705 9 34589299 to 34589313 14 - TSS region transcription start site region 88705
Tssr84320 9 34636303 to 34636308 5 + TSS region transcription start site region 84320
Tssr84321 9 34647563 to 34647571 8 + TSS region transcription start site region 84321
Tssr84322 9 34686794 to 34686799 5 + TSS region transcription start site region 84322
Gm33777 9 34692095 to 34711952 19857 + lncRNA gene predicted gene, 33777
5330423I11Rik 9 34751328 to 34753246 1918 unclassified gene RIKEN cDNA 5330423I11 gene
Gm33613 9 34775339 to 34806226 30887 - lncRNA gene predicted gene, 33613
Tssr84323 9 34797802 to 34797806 4 + TSS region transcription start site region 84323
Gm33561 9 34823247 to 34854379 31132 - lncRNA gene predicted gene, 33561
Gm45955 9 34860082 to 34870544 10462 - lncRNA gene predicted gene, 45955
Kirrel3os 9 34918233 to 34929509 11276 - antisense lncRNA gene kirre like nephrin family adhesion molecule 3, opposite strand
Tlf 9 34926452 to 37395074 2468622 QTL T lymphocyte fraction
D9Mit66 9 34926452 to 34926575 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 66
Tssr88706 9 34948786 to 34948799 13 - TSS region transcription start site region 88706
Tssr2820 9 34948829 to 34948836 7 - TSS region transcription start site region 2820
Gm23702 9 34960019 to 34960148 129 + rRNA gene predicted gene, 23702
Tssr2821 9 35000441 to 35000446 5 + TSS region transcription start site region 2821
Tssr88707 9 35005776 to 35005818 42 - TSS region transcription start site region 88707
Cpgi21548 9 35017599 to 35017939 340 CpG island CpG island 21548
Cpgi21549 9 35034857 to 35035288 431 CpG island CpG island 21549
St3gal4 9 35046576 to 35116810 70234 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4
Tssr88708 9 35053740 to 35053744 4 - TSS region transcription start site region 88708
Tssr88709 9 35054102 to 35054131 29 - TSS region transcription start site region 88709
Tssr84324 9 35054233 to 35054238 5 + TSS region transcription start site region 84324
Tssr88710 9 35055658 to 35055669 11 - TSS region transcription start site region 88710
Tssr88711 9 35055785 to 35055808 23 - TSS region transcription start site region 88711
Tssr88712 9 35070353 to 35070358 5 - TSS region transcription start site region 88712
Tssr88713 9 35099046 to 35099057 11 - TSS region transcription start site region 88713
Tssr88714 9 35099062 to 35099078 16 - TSS region transcription start site region 88714
Tssr88715 9 35099080 to 35099087 7 - TSS region transcription start site region 88715
Tssr88716 9 35099108 to 35099119 11 - TSS region transcription start site region 88716
Cpgi21550 9 35116253 to 35117281 1028 CpG island CpG island 21550
4930581F22Rik 9 35116728 to 35130922 14194 + lncRNA gene RIKEN cDNA 4930581F22 gene
Tssr84325 9 35116740 to 35116767 27 + TSS region transcription start site region 84325
Tssr88717 9 35116760 to 35116793 33 - TSS region transcription start site region 88717