Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:31761136-32623446

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118 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm8171 9 31782984 to 31783703 719 + pseudogene predicted gene 8171
Barx2 9 31846044 to 31913285 67241 - protein coding gene BarH-like homeobox 2
Cpgi21533 9 31858702 to 31859015 313 CpG island CpG island 21533
Gm31497 9 31905993 to 31911198 5205 + antisense lncRNA gene predicted gene, 31497
Tssr84225 9 31906015 to 31906036 21 + TSS region transcription start site region 84225
Cpgi21534 9 31912740 to 31915465 2725 CpG island CpG island 21534
Tssr88653 9 31913161 to 31913177 16 - TSS region transcription start site region 88653
Tssr88654 9 31913232 to 31913244 12 - TSS region transcription start site region 88654
Tssr88655 9 31913258 to 31913303 45 - TSS region transcription start site region 88655
Tssr88656 9 31913318 to 31913333 15 - TSS region transcription start site region 88656
Tssr88657 9 31913466 to 31913483 17 - TSS region transcription start site region 88657
Cpgi21535 9 31925845 to 31926230 385 CpG island CpG island 21535
Gm3756 9 31935446 to 31936800 1354 - pseudogene predicted gene 3756
Tssr88658 9 31936893 to 31936905 12 - TSS region transcription start site region 88658
Gm47465 9 31947018 to 32005460 58442 - lincRNA gene predicted gene, 47465
Tssr84226 9 31948342 to 31948345 3 + TSS region transcription start site region 84226
Tpi-rs4 9 31948346 to 31949065 719 + pseudogene triosephosphate isomerase related sequence 4
Cpgi21536 9 31997671 to 31998095 424 CpG island CpG island 21536
Cpgi21537 9 32031598 to 32033225 1627 CpG island CpG island 21537
Tssr84227 9 32032263 to 32032274 11 + TSS region transcription start site region 84227
Tssr84228 9 32032285 to 32032375 90 + TSS region transcription start site region 84228
Tssr84229 9 32032378 to 32032426 48 + TSS region transcription start site region 84229
Tssr84230 9 32036929 to 32036930 1 + TSS region transcription start site region 84230
Tssr84231 9 32040419 to 32040420 1 + TSS region transcription start site region 84231
Gm47481 9 32044385 to 32044858 473 - pseudogene predicted gene, 47481
A330075M08Rik 9 32065398 to 32066848 1450 unclassified gene RIKEN cDNA A330075M08 gene
Gm44453 9 32067171 to 32067296 125 + miRNA gene predicted gene, 44453
Tssr84232 9 32078231 to 32078240 9 + TSS region transcription start site region 84232
Gm47496 9 32078281 to 32078765 484 + pseudogene predicted gene, 47496
Tssr84233 9 32095791 to 32095825 34 + TSS region transcription start site region 84233
Tssr84234 9 32115979 to 32115996 17 + TSS region transcription start site region 84234
Tssr84235 9 32116006 to 32116032 26 + TSS region transcription start site region 84235
Tssr84236 9 32116040 to 32116049 9 + TSS region transcription start site region 84236
Arhgap32 9 32116136 to 32268446 152310 + protein coding gene Rho GTPase activating protein 32
Tssr2817 9 32143419 to 32143421 2 + TSS region transcription start site region 2817
Tssr84237 9 32159552 to 32159556 4 + TSS region transcription start site region 84237
Gm47536 9 32174938 to 32175168 230 - pseudogene predicted gene, 47536
Tssr84238 9 32224111 to 32224125 14 + TSS region transcription start site region 84238
Tssr84239 9 32224246 to 32224264 18 + TSS region transcription start site region 84239
Tssr84240 9 32224268 to 32224281 13 + TSS region transcription start site region 84240
Tssr84241 9 32224285 to 32224292 7 + TSS region transcription start site region 84241
Tssr84242 9 32224305 to 32224320 15 + TSS region transcription start site region 84242
Tssr84243 9 32224324 to 32224330 6 + TSS region transcription start site region 84243
Tssr84244 9 32224457 to 32224497 40 + TSS region transcription start site region 84244
Tssr84245 9 32239146 to 32239178 32 + TSS region transcription start site region 84245
Tssr84246 9 32264660 to 32264664 4 + TSS region transcription start site region 84246
Tssr84247 9 32313056 to 32313059 3 + TSS region transcription start site region 84247
Kcnj5 9 32314707 to 32344350 29643 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 5
Cpgi21538 9 32343987 to 32344982 995 CpG island CpG island 21538
Tssr88659 9 32344241 to 32344255 14 - TSS region transcription start site region 88659
Tssr88660 9 32344260 to 32344292 32 - TSS region transcription start site region 88660
Tssr88661 9 32344308 to 32344352 44 - TSS region transcription start site region 88661
Gm39317 9 32348682 to 32361738 13056 + lincRNA gene predicted gene, 39317
Gm31755 9 32370127 to 32411798 41671 - lncRNA gene predicted gene, 31755
Tssr84248 9 32372409 to 32372425 16 + TSS region transcription start site region 84248
Tssr84249 9 32372435 to 32372446 11 + TSS region transcription start site region 84249
Tssr84250 9 32372447 to 32372454 7 + TSS region transcription start site region 84250
Tssr84251 9 32372470 to 32372471 1 + TSS region transcription start site region 84251
Tssr84252 9 32372483 to 32372500 17 + TSS region transcription start site region 84252
Kcnj1 9 32372493 to 32399197 26704 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 1
Tssr84253 9 32372509 to 32372520 11 + TSS region transcription start site region 84253
Tssr84254 9 32376983 to 32376985 2 + TSS region transcription start site region 84254
Tssr84255 9 32393963 to 32393977 14 + TSS region transcription start site region 84255
Cpgi21539 9 32408910 to 32409644 734 CpG island CpG island 21539
Fli1 9 32422204 to 32542861 120657 - protein coding gene Friend leukemia integration 1
Tssr88662 9 32422925 to 32422929 4 - TSS region transcription start site region 88662
Tssr88663 9 32423130 to 32423162 32 - TSS region transcription start site region 88663
Tssr88664 9 32423817 to 32423838 21 - TSS region transcription start site region 88664
Tssr88665 9 32423839 to 32423851 12 - TSS region transcription start site region 88665
Tssr88666 9 32424114 to 32424135 21 - TSS region transcription start site region 88666
Tssr88667 9 32424152 to 32424174 22 - TSS region transcription start site region 88667
Tssr88668 9 32429703 to 32429706 3 - TSS region transcription start site region 88668
Gm22060 9 32446822 to 32446928 106 - snRNA gene predicted gene, 22060
Tssr88669 9 32451378 to 32451385 7 - TSS region transcription start site region 88669
Tssr88670 9 32451399 to 32451416 17 - TSS region transcription start site region 88670
Tssr88671 9 32451456 to 32451466 10 - TSS region transcription start site region 88671
Tssr88672 9 32452045 to 32452061 16 - TSS region transcription start site region 88672
Tssr88673 9 32452123 to 32452136 13 - TSS region transcription start site region 88673
Gm38292 9 32477333 to 32480377 3044 - unclassified gene predicted gene, 38292
Tssr88674 9 32486330 to 32486354 24 - TSS region transcription start site region 88674
Tssr88675 9 32492160 to 32492164 4 - TSS region transcription start site region 88675
Lgth4 9 32500455 to 32500594 139 QTL body length 4
D9Mit90 9 32500455 to 32500594 139 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 90
Cfmq2 9 32500455 to 32500594 139 QTL cystic fibrosis modifier QTL 2
Cq4 9 32500455 to 32500594 139 QTL cholesterol QTL 4
Si5lq2 9 32500455 to 32500594 139 QTL serum IGFBP-5 level QTL 2
Tssr84256 9 32501295 to 32501305 10 + TSS region transcription start site region 84256
Tssr88676 9 32502522 to 32502534 12 - TSS region transcription start site region 88676
Tssr84257 9 32504329 to 32504334 5 + TSS region transcription start site region 84257
Gm38346 9 32507745 to 32510383 2638 - unclassified gene predicted gene, 38346
Tssr84258 9 32508401 to 32508432 31 + TSS region transcription start site region 84258
Gm27201 9 32508413 to 32516958 8545 + antisense lncRNA gene predicted gene 27201
Tssr88677 9 32515050 to 32515053 3 - TSS region transcription start site region 88677
Tssr88678 9 32524506 to 32524510 4 - TSS region transcription start site region 88678
Gm37474 9 32525145 to 32526958 1813 - unclassified gene predicted gene, 37474
Tssr88679 9 32526937 to 32526941 4 - TSS region transcription start site region 88679
Gm37082 9 32535251 to 32537177 1926 - unclassified gene predicted gene, 37082
Cpgi21540 9 32540365 to 32541720 1355 CpG island CpG island 21540
Tssr88680 9 32541321 to 32541335 14 - TSS region transcription start site region 88680
Tssr88681 9 32541345 to 32541350 5 - TSS region transcription start site region 88681
Tssr88682 9 32541358 to 32541416 58 - TSS region transcription start site region 88682
Tssr88683 9 32541424 to 32541431 7 - TSS region transcription start site region 88683
Tssr88684 9 32541466 to 32541476 10 - TSS region transcription start site region 88684
Tssr88685 9 32541589 to 32541602 13 - TSS region transcription start site region 88685
Tssr84259 9 32541612 to 32541656 44 + TSS region transcription start site region 84259
Tssr88686 9 32541655 to 32541691 36 - TSS region transcription start site region 88686
Cpgi21541 9 32542145 to 32542910 765 CpG island CpG island 21541
Tssr88687 9 32542986 to 32543008 22 - TSS region transcription start site region 88687
Cpgi21542 9 32545384 to 32545701 317 CpG island CpG island 21542
Tssr88688 9 32549507 to 32549529 22 - TSS region transcription start site region 88688
Gm31871 9 32594496 to 32607083 12587 + lncRNA gene predicted gene, 31871
Tssr84260 9 32594745 to 32594747 2 + TSS region transcription start site region 84260
Tssr88689 9 32608979 to 32609001 22 - TSS region transcription start site region 88689
Gm47680 9 32613452 to 32629557 16105 + lincRNA gene predicted gene, 47680
Tssr88690 9 32615943 to 32615948 5 - TSS region transcription start site region 88690
Tssr84261 9 32616262 to 32616290 28 + TSS region transcription start site region 84261
Tssr84262 9 32617690 to 32617711 21 + TSS region transcription start site region 84262
Tssr2818 9 32620946 to 32620949 3 + TSS region transcription start site region 2818