Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:31431015-32381036

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmem45b 9 31426196 to 31464238 38042 - protein coding gene transmembrane protein 45b
Gm8162 9 31434046 to 31434707 661 - pseudogene predicted gene 8162
Tssr88648 9 31434742 to 31434771 29 - TSS region transcription start site region 88648
5033425B01Rik 9 31438465 to 31439767 1302 - unclassified gene RIKEN cDNA 5033425B01 gene
Tssr88649 9 31455426 to 31455430 4 - TSS region transcription start site region 88649
Tssr88650 9 31459287 to 31459289 2 - TSS region transcription start site region 88650
Cpgi21530 9 31463736 to 31464269 533 CpG island CpG island 21530
4930434F21Rik 9 31463906 to 31515809 51903 + bidirectional promoter lncRNA gene RIKEN cDNA 4930434F21 gene
Tssr88651 9 31464206 to 31464222 16 - TSS region transcription start site region 88651
Tssr88652 9 31464239 to 31464252 13 - TSS region transcription start site region 88652
Gm31408 9 31559609 to 31579634 20025 + lincRNA gene predicted gene, 31408
Cpgi21531 9 31566502 to 31566821 319 CpG island CpG island 21531
Gm18226 9 31567735 to 31568246 511 - pseudogene predicted gene, 18226
Gm18820 9 31643770 to 31644657 887 + pseudogene predicted gene, 18820
Gm47436 9 31676808 to 31678026 1218 - lincRNA gene predicted gene, 47436
Cpgi21532 9 31688205 to 31688358 153 CpG island CpG island 21532
Gm8171 9 31782984 to 31783703 719 + pseudogene predicted gene 8171
Barx2 9 31846044 to 31913285 67241 - protein coding gene BarH-like homeobox 2
Cpgi21533 9 31858702 to 31859015 313 CpG island CpG island 21533
Gm31497 9 31905993 to 31911198 5205 + antisense lncRNA gene predicted gene, 31497
Tssr84225 9 31906015 to 31906036 21 + TSS region transcription start site region 84225
Cpgi21534 9 31912740 to 31915465 2725 CpG island CpG island 21534
Tssr88653 9 31913161 to 31913177 16 - TSS region transcription start site region 88653
Tssr88654 9 31913232 to 31913244 12 - TSS region transcription start site region 88654
Tssr88655 9 31913258 to 31913303 45 - TSS region transcription start site region 88655
Tssr88656 9 31913318 to 31913333 15 - TSS region transcription start site region 88656
Tssr88657 9 31913466 to 31913483 17 - TSS region transcription start site region 88657
Cpgi21535 9 31925845 to 31926230 385 CpG island CpG island 21535
Gm3756 9 31935446 to 31936800 1354 - pseudogene predicted gene 3756
Tssr88658 9 31936893 to 31936905 12 - TSS region transcription start site region 88658
Gm47465 9 31947018 to 32005460 58442 - lincRNA gene predicted gene, 47465
Tssr84226 9 31948342 to 31948345 3 + TSS region transcription start site region 84226
Tpi-rs4 9 31948346 to 31949065 719 + pseudogene triosephosphate isomerase related sequence 4
Cpgi21536 9 31997671 to 31998095 424 CpG island CpG island 21536
Cpgi21537 9 32031598 to 32033225 1627 CpG island CpG island 21537
Tssr84227 9 32032263 to 32032274 11 + TSS region transcription start site region 84227
Tssr84228 9 32032285 to 32032375 90 + TSS region transcription start site region 84228
Tssr84229 9 32032378 to 32032426 48 + TSS region transcription start site region 84229
Tssr84230 9 32036929 to 32036930 1 + TSS region transcription start site region 84230
Tssr84231 9 32040419 to 32040420 1 + TSS region transcription start site region 84231
Gm47481 9 32044385 to 32044858 473 - pseudogene predicted gene, 47481
A330075M08Rik 9 32065398 to 32066848 1450 unclassified gene RIKEN cDNA A330075M08 gene
Gm44453 9 32067171 to 32067296 125 + miRNA gene predicted gene, 44453
Tssr84232 9 32078231 to 32078240 9 + TSS region transcription start site region 84232
Gm47496 9 32078281 to 32078765 484 + pseudogene predicted gene, 47496
Tssr84233 9 32095791 to 32095825 34 + TSS region transcription start site region 84233
Tssr84234 9 32115979 to 32115996 17 + TSS region transcription start site region 84234
Tssr84235 9 32116006 to 32116032 26 + TSS region transcription start site region 84235
Tssr84236 9 32116040 to 32116049 9 + TSS region transcription start site region 84236
Arhgap32 9 32116136 to 32268446 152310 + protein coding gene Rho GTPase activating protein 32
Tssr2817 9 32143419 to 32143421 2 + TSS region transcription start site region 2817
Tssr84237 9 32159552 to 32159556 4 + TSS region transcription start site region 84237
Gm47536 9 32174938 to 32175168 230 - pseudogene predicted gene, 47536
Tssr84238 9 32224111 to 32224125 14 + TSS region transcription start site region 84238
Tssr84239 9 32224246 to 32224264 18 + TSS region transcription start site region 84239
Tssr84240 9 32224268 to 32224281 13 + TSS region transcription start site region 84240
Tssr84241 9 32224285 to 32224292 7 + TSS region transcription start site region 84241
Tssr84242 9 32224305 to 32224320 15 + TSS region transcription start site region 84242
Tssr84243 9 32224324 to 32224330 6 + TSS region transcription start site region 84243
Tssr84244 9 32224457 to 32224497 40 + TSS region transcription start site region 84244
Tssr84245 9 32239146 to 32239178 32 + TSS region transcription start site region 84245
Tssr84246 9 32264660 to 32264664 4 + TSS region transcription start site region 84246
Tssr84247 9 32313056 to 32313059 3 + TSS region transcription start site region 84247
Kcnj5 9 32314707 to 32344350 29643 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 5
Cpgi21538 9 32343987 to 32344982 995 CpG island CpG island 21538
Tssr88659 9 32344241 to 32344255 14 - TSS region transcription start site region 88659
Tssr88660 9 32344260 to 32344292 32 - TSS region transcription start site region 88660
Tssr88661 9 32344308 to 32344352 44 - TSS region transcription start site region 88661
Gm39317 9 32348682 to 32361738 13056 + lincRNA gene predicted gene, 39317
Gm31755 9 32370127 to 32411798 41671 - lncRNA gene predicted gene, 31755
Tssr84248 9 32372409 to 32372425 16 + TSS region transcription start site region 84248
Tssr84249 9 32372435 to 32372446 11 + TSS region transcription start site region 84249
Tssr84250 9 32372447 to 32372454 7 + TSS region transcription start site region 84250
Tssr84251 9 32372470 to 32372471 1 + TSS region transcription start site region 84251
Tssr84252 9 32372483 to 32372500 17 + TSS region transcription start site region 84252
Kcnj1 9 32372493 to 32399197 26704 + protein coding gene potassium inwardly-rectifying channel, subfamily J, member 1
Tssr84253 9 32372509 to 32372520 11 + TSS region transcription start site region 84253
Tssr84254 9 32376983 to 32376985 2 + TSS region transcription start site region 84254