Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:31284609-31854634

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prdm10 9 31280538 to 31381723 101185 + protein coding gene PR domain containing 10
Tssr84223 9 31354316 to 31354340 24 + TSS region transcription start site region 84223
D9Mit188 9 31360262 to 31360395 133 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 188
Elnv 9 31360262 to 37395074 6034812 QTL epilepsy naive
4932433N03Rik 9 31379073 to 31381727 2654 unclassified gene RIKEN cDNA 4932433N03 gene
1700023A20Rik 9 31385003 to 31386107 1104 unclassified gene RIKEN cDNA 1700023A20 gene
Cpgi21529 9 31385597 to 31386843 1246 CpG island CpG island 21529
Tssr84224 9 31386187 to 31386235 48 + TSS region transcription start site region 84224
Nfrkb 9 31386192 to 31421333 35141 + protein coding gene nuclear factor related to kappa B binding protein
Tmem45b 9 31426196 to 31464238 38042 - protein coding gene transmembrane protein 45b
Gm8162 9 31434046 to 31434707 661 - pseudogene predicted gene 8162
Tssr88648 9 31434742 to 31434771 29 - TSS region transcription start site region 88648
5033425B01Rik 9 31438465 to 31439767 1302 - unclassified gene RIKEN cDNA 5033425B01 gene
Tssr88649 9 31455426 to 31455430 4 - TSS region transcription start site region 88649
Tssr88650 9 31459287 to 31459289 2 - TSS region transcription start site region 88650
Cpgi21530 9 31463736 to 31464269 533 CpG island CpG island 21530
4930434F21Rik 9 31463906 to 31515809 51903 + bidirectional promoter lncRNA gene RIKEN cDNA 4930434F21 gene
Tssr88651 9 31464206 to 31464222 16 - TSS region transcription start site region 88651
Tssr88652 9 31464239 to 31464252 13 - TSS region transcription start site region 88652
Gm31408 9 31559609 to 31579634 20025 + lincRNA gene predicted gene, 31408
Cpgi21531 9 31566502 to 31566821 319 CpG island CpG island 21531
Gm18226 9 31567735 to 31568246 511 - pseudogene predicted gene, 18226
Gm18820 9 31643770 to 31644657 887 + pseudogene predicted gene, 18820
Gm47436 9 31676808 to 31678026 1218 - lincRNA gene predicted gene, 47436
Cpgi21532 9 31688205 to 31688358 153 CpG island CpG island 21532
Gm8171 9 31782984 to 31783703 719 + pseudogene predicted gene 8171
Barx2 9 31846044 to 31913285 67241 - protein coding gene BarH-like homeobox 2