Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:31159742-31709771

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aplp2 9 31149557 to 31211815 62258 - protein coding gene amyloid beta (A4) precursor-like protein 2
Gm46106 9 31160233 to 31161219 986 - pseudogene predicted gene, 46106
Tssr88632 9 31163383 to 31163478 95 - TSS region transcription start site region 88632
Tssr84217 9 31163557 to 31163590 33 + TSS region transcription start site region 84217
Tssr88633 9 31164661 to 31164680 19 - TSS region transcription start site region 88633
Tssr88634 9 31167619 to 31167658 39 - TSS region transcription start site region 88634
Tssr88635 9 31167664 to 31167704 40 - TSS region transcription start site region 88635
Tssr88636 9 31168760 to 31168808 48 - TSS region transcription start site region 88636
Tssr88637 9 31168810 to 31168842 32 - TSS region transcription start site region 88637
Tssr88638 9 31168875 to 31168919 44 - TSS region transcription start site region 88638
Tssr88639 9 31170520 to 31170524 4 - TSS region transcription start site region 88639
Tssr88640 9 31170531 to 31170539 8 - TSS region transcription start site region 88640
Tssr88641 9 31170543 to 31170559 16 - TSS region transcription start site region 88641
Tssr88642 9 31170568 to 31170582 14 - TSS region transcription start site region 88642
Tssr88643 9 31170607 to 31170622 15 - TSS region transcription start site region 88643
Gm33535 9 31177148 to 31177895 747 - pseudogene predicted gene, 33535
Tssr88644 9 31209609 to 31209614 5 - TSS region transcription start site region 88644
Cpgi21527 9 31210760 to 31212549 1789 CpG island CpG island 21527
Tssr84218 9 31211334 to 31211367 33 + TSS region transcription start site region 84218
Tssr88645 9 31211805 to 31211824 19 - TSS region transcription start site region 88645
Tssr84219 9 31252606 to 31252619 13 + TSS region transcription start site region 84219
Gm7244 9 31274821 to 31275275 454 + pseudogene predicted gene 7244
Gm8154 9 31278020 to 31281723 3703 unclassified gene predicted gene 8154
4930517E14Rik 9 31278021 to 31280992 2971 - lincRNA gene Riken cDNA 4930517E14 gene
Tssr88646 9 31279892 to 31279905 13 - TSS region transcription start site region 88646
Cpgi21528 9 31279958 to 31281668 1710 CpG island CpG island 21528
Tssr88647 9 31280151 to 31280184 33 - TSS region transcription start site region 88647
Tssr84220 9 31280525 to 31280566 41 + TSS region transcription start site region 84220
Prdm10 9 31280538 to 31381723 101185 + protein coding gene PR domain containing 10
Gm10910 9 31280669 to 31281727 1058 + protein coding gene predicted gene 10910
Tssr84221 9 31280925 to 31280934 9 + TSS region transcription start site region 84221
Tssr84222 9 31281225 to 31281269 44 + TSS region transcription start site region 84222
Tssr84223 9 31354316 to 31354340 24 + TSS region transcription start site region 84223
D9Mit188 9 31360262 to 31360395 133 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 188
Elnv 9 31360262 to 37395074 6034812 QTL epilepsy naive
4932433N03Rik 9 31379073 to 31381727 2654 unclassified gene RIKEN cDNA 4932433N03 gene
1700023A20Rik 9 31385003 to 31386107 1104 unclassified gene RIKEN cDNA 1700023A20 gene
Cpgi21529 9 31385597 to 31386843 1246 CpG island CpG island 21529
Tssr84224 9 31386187 to 31386235 48 + TSS region transcription start site region 84224
Nfrkb 9 31386192 to 31421333 35141 + protein coding gene nuclear factor related to kappa B binding protein
Tmem45b 9 31426196 to 31464238 38042 - protein coding gene transmembrane protein 45b
Gm8162 9 31434046 to 31434707 661 - pseudogene predicted gene 8162
Tssr88648 9 31434742 to 31434771 29 - TSS region transcription start site region 88648
5033425B01Rik 9 31438465 to 31439767 1302 - unclassified gene RIKEN cDNA 5033425B01 gene
Tssr88649 9 31455426 to 31455430 4 - TSS region transcription start site region 88649
Tssr88650 9 31459287 to 31459289 2 - TSS region transcription start site region 88650
Cpgi21530 9 31463736 to 31464269 533 CpG island CpG island 21530
4930434F21Rik 9 31463906 to 31515809 51903 + bidirectional promoter lncRNA gene RIKEN cDNA 4930434F21 gene
Tssr88651 9 31464206 to 31464222 16 - TSS region transcription start site region 88651
Tssr88652 9 31464239 to 31464252 13 - TSS region transcription start site region 88652
Gm31408 9 31559609 to 31579634 20025 + lincRNA gene predicted gene, 31408
Cpgi21531 9 31566502 to 31566821 319 CpG island CpG island 21531
Gm18226 9 31567735 to 31568246 511 - pseudogene predicted gene, 18226
Gm18820 9 31643770 to 31644657 887 + pseudogene predicted gene, 18820
Gm47436 9 31676808 to 31678026 1218 - lincRNA gene predicted gene, 47436
Cpgi21532 9 31688205 to 31688358 153 CpG island CpG island 21532