Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:3027778-4399736

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm26870 9 3000282 to 3038313 38031 - lincRNA gene predicted gene, 26870
Gm10717 9 3025417 to 3033289 7872 + protein coding gene predicted gene 10717
Tssr83588 9 3029371 to 3029395 24 + TSS region transcription start site region 83588
Cpgi21325 9 3029387 to 3029710 323 CpG island CpG island 21325
Tssr88023 9 3029402 to 3029420 18 - TSS region transcription start site region 88023
Tssr83589 9 3029655 to 3029676 21 + TSS region transcription start site region 83589
Tssr83590 9 3030155 to 3030176 21 + TSS region transcription start site region 83590
Tssr83591 9 3031068 to 3031097 29 + TSS region transcription start site region 83591
Tssr83592 9 3031098 to 3031114 16 + TSS region transcription start site region 83592
Tssr83593 9 3031884 to 3031894 10 + TSS region transcription start site region 83593
Cpgi21326 9 3031887 to 3032060 173 CpG island CpG island 21326
Tssr88024 9 3031911 to 3031924 13 - TSS region transcription start site region 88024
Tssr83594 9 3031999 to 3032033 34 + TSS region transcription start site region 83594
Tssr83595 9 3032347 to 3032397 50 + TSS region transcription start site region 83595
Cpgi21327 9 3032351 to 3032711 360 CpG island CpG island 21327
Tssr83596 9 3032435 to 3032456 21 + TSS region transcription start site region 83596
Tssr83597 9 3034197 to 3034209 12 + TSS region transcription start site region 83597
Gm17535 9 3034599 to 3035805 1206 + protein coding gene predicted gene, 17535
Tssr83598 9 3035719 to 3035737 18 + TSS region transcription start site region 83598
Cpgi21328 9 3035724 to 3036589 865 CpG island CpG island 21328
Tssr83599 9 3035877 to 3035903 26 + TSS region transcription start site region 83599
Tssr88025 9 3035912 to 3035922 10 - TSS region transcription start site region 88025
Tssr83600 9 3036070 to 3036098 28 + TSS region transcription start site region 83600
Tssr88026 9 3036093 to 3036128 35 - TSS region transcription start site region 88026
Tssr83601 9 3036315 to 3036343 28 + TSS region transcription start site region 83601
Tssr88027 9 3036347 to 3036373 26 - TSS region transcription start site region 88027
Tssr83602 9 3036356 to 3036387 31 + TSS region transcription start site region 83602
Tssr88028 9 3036386 to 3036397 11 - TSS region transcription start site region 88028
Tssr83603 9 3036398 to 3036401 3 + TSS region transcription start site region 83603
Gm10715 9 3036877 to 3038316 1439 + protein coding gene predicted gene 10715
Tssr83604 9 3037330 to 3037355 25 + TSS region transcription start site region 83604
Cpgi21329 9 3038008 to 3038230 222 CpG island CpG island 21329
Tssr83605 9 3038013 to 3038034 21 + TSS region transcription start site region 83605
Tssr88029 9 3038044 to 3038070 26 - TSS region transcription start site region 88029
Tssr83606 9 3038182 to 3038198 16 + TSS region transcription start site region 83606
Tssr88030 9 3038183 to 3038194 11 - TSS region transcription start site region 88030
Mir101c 9 3038669 to 3038743 74 - miRNA gene microRNA 101c
Gm32390 9 3137043 to 3138739 1696 - pseudogene predicted gene, 32390
4930547G20Rik 9 3184956 to 3185813 857 unclassified gene RIKEN cDNA 4930547G20 gene
Gm7344 9 3187110 to 3188331 1221 + pseudogene predicted gene 7344
4930433N12Rik 9 3190269 to 3199813 9544 - lncRNA gene RIKEN cDNA 4930433N12 gene
Cpgi21330 9 3199810 to 3200237 427 CpG island CpG island 21330
Tssr83607 9 3199888 to 3199899 11 + TSS region transcription start site region 83607
Gm31138 9 3199894 to 3215230 15336 + lincRNA gene predicted gene, 31138
Tssr83608 9 3199908 to 3199928 20 + TSS region transcription start site region 83608
Tssr83609 9 3199930 to 3199939 9 + TSS region transcription start site region 83609
Tssr83610 9 3199944 to 3199951 7 + TSS region transcription start site region 83610
4930422G07Rik 9 3213285 to 3214153 868 unclassified gene RIKEN cDNA 4930422G07 gene
Olfr369-ps1 9 3233343 to 3236366 3023 + pseudogene olfactory receptor 369, pseudogene 1
Tssr88031 9 3258604 to 3258629 25 - TSS region transcription start site region 88031
Tssr83611 9 3258829 to 3258856 27 + TSS region transcription start site region 83611
Tssr88032 9 3258863 to 3258902 39 - TSS region transcription start site region 88032
Tssr88033 9 3259231 to 3259247 16 - TSS region transcription start site region 88033
Tssr88034 9 3260872 to 3260875 3 - TSS region transcription start site region 88034
Gm27679 9 3263442 to 3263525 83 - unclassified non-coding RNA gene predicted gene, 27679
Tssr83612 9 3335135 to 3335161 26 + TSS region transcription start site region 83612
Alkbh8 9 3335231 to 3391154 55923 + protein coding gene alkB homolog 8, tRNA methyltransferase
Tssr83613 9 3335470 to 3335501 31 + TSS region transcription start site region 83613
Tssr83614 9 3335508 to 3335531 23 + TSS region transcription start site region 83614
Gm24918 9 3352657 to 3352786 129 + snoRNA gene predicted gene, 24918
Tssr83615 9 3372522 to 3372525 3 + TSS region transcription start site region 83615
Gm23275 9 3395439 to 3395542 103 + snRNA gene predicted gene, 23275
Cwf19l2 9 3403592 to 3479236 75644 + protein coding gene CWF19-like 2, cell cycle control (S. pombe)
Cpgi21331 9 3403873 to 3404175 302 CpG island CpG island 21331
Tssr83616 9 3404039 to 3404050 11 + TSS region transcription start site region 83616
Tssr83617 9 3404058 to 3404098 40 + TSS region transcription start site region 83617
Tssr83618 9 3416966 to 3416997 31 + TSS region transcription start site region 83618
Gm5362 9 3494379 to 3497463 3084 - pseudogene predicted gene 5362
Gm40506 9 3529135 to 3532818 3683 - lncRNA gene predicted gene, 40506
Cpgi21332 9 3531680 to 3533239 1559 CpG island CpG island 21332
Tssr83619 9 3532295 to 3532354 59 + TSS region transcription start site region 83619
Tssr83620 9 3532360 to 3532448 88 + TSS region transcription start site region 83620
Gucy1a2 9 3532778 to 3894736 361958 + protein coding gene guanylate cyclase 1, soluble, alpha 2
Tssr83621 9 3904162 to 3904180 18 + TSS region transcription start site region 83621
Tgq19 9 4060750 to 4060750 0 QTL triglyceride QTL 19
Gm45957 9 4138746 to 4182511 43765 + lncRNA gene predicted gene, 45957
Gm5363 9 4213922 to 4215941 2019 + pseudogene predicted gene 5363
Gm45860 9 4228796 to 4229129 333 - pseudogene predicted gene 45860
Tssr83622 9 4250954 to 4250958 4 + TSS region transcription start site region 83622
Cpgi21333 9 4260034 to 4260893 859 CpG island CpG island 21333
Gm22195 9 4271130 to 4271237 107 - miRNA gene predicted gene, 22195
Aasdhppt 9 4294793 to 4309471 14678 - protein coding gene aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase
Cpgi21334 9 4309041 to 4310212 1171 CpG island CpG island 21334
Tssr88035 9 4309432 to 4309504 72 - TSS region transcription start site region 88035
Tssr88036 9 4309510 to 4309517 7 - TSS region transcription start site region 88036
Tssr83623 9 4309719 to 4309748 29 + TSS region transcription start site region 83623
Tssr83624 9 4309760 to 4309779 19 + TSS region transcription start site region 83624
Tssr83625 9 4309799 to 4309825 26 + TSS region transcription start site region 83625
Tssr83626 9 4309827 to 4309842 15 + TSS region transcription start site region 83626
Kbtbd3 9 4309833 to 4331732 21899 + protein coding gene kelch repeat and BTB (POZ) domain containing 3
Tssr83627 9 4309878 to 4309933 55 + TSS region transcription start site region 83627
Tssr83628 9 4313101 to 4313105 4 + TSS region transcription start site region 83628
Gm23992 9 4371269 to 4371335 66 - miRNA gene predicted gene, 23992
Cpgi21335 9 4376105 to 4376722 617 CpG island CpG island 21335
Tssr83629 9 4376533 to 4376600 67 + TSS region transcription start site region 83629
Msantd4 9 4376562 to 4386870 10308 + protein coding gene Myb/SANT-like DNA-binding domain containing 4 with coiled-coils