Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:29554417-30680916

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ntm 9 28994750 to 29963141 968391 - protein coding gene neurotrimin
D9Mit244 9 29556772 to 29556918 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 244
D9Mit244.2 9 29556863 to 29557002 139 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 244.2
Gm15521 9 29590484 to 29592510 2026 - sense intronic lncRNA gene predicted gene 15521
Tssr88596 9 29769330 to 29769334 4 - TSS region transcription start site region 88596
Tssr2815 9 29771503 to 29771504 1 + TSS region transcription start site region 2815
Tssr88597 9 29820950 to 29820952 2 - TSS region transcription start site region 88597
Tssr88598 9 29834434 to 29834439 5 - TSS region transcription start site region 88598
Tssr88599 9 29939790 to 29939801 11 - TSS region transcription start site region 88599
Paasd1 9 29949417 to 30285916 336499 QTL peak activity after sleep deprivation 1
Cpgi21520 9 29962373 to 29962886 513 CpG island CpG island 21520
Tssr88600 9 29963035 to 29963046 11 - TSS region transcription start site region 88600
Tssr88601 9 29963092 to 29963103 11 - TSS region transcription start site region 88601
Tssr88602 9 29963112 to 29963141 29 - TSS region transcription start site region 88602
Tssr88603 9 29963145 to 29963154 9 - TSS region transcription start site region 88603
Tssr88604 9 29963205 to 29963210 5 - TSS region transcription start site region 88604
Tssr84202 9 29992123 to 29992124 1 + TSS region transcription start site region 84202
Gm19640 9 30063256 to 30063719 463 - pseudogene predicted gene, 19640
Gm47677 9 30167575 to 30171881 4306 + lincRNA gene predicted gene, 47677
Gm26435 9 30291868 to 30291974 106 - snRNA gene predicted gene, 26435
Gm30933 9 30385980 to 30426976 40996 - bidirectional promoter lncRNA gene predicted gene, 30933
Cpgi21521 9 30426867 to 30427724 857 CpG island CpG island 21521
Tssr84203 9 30427016 to 30427019 3 + TSS region transcription start site region 84203
Tssr84204 9 30427033 to 30427108 75 + TSS region transcription start site region 84204
Snx19 9 30427108 to 30466733 39625 + protein coding gene sorting nexin 19
Tssr84205 9 30438868 to 30438899 31 + TSS region transcription start site region 84205
Obq37 9 30479879 to 30479879 0 QTL obesity QTL 37
Gm47714 9 30489959 to 30490376 417 + pseudogene predicted gene, 47714
Igan3 9 30503398 to 40654618 10151220 QTL IgA nephropathy 3
D9Mit88 9 30503398 to 30503599 201 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 88
Rps2-ps12 9 30512940 to 30513538 598 + pseudogene ribosomal protein S2, pseudogene 12
Tssr2816 9 30563233 to 30563236 3 + TSS region transcription start site region 2816
Gm47716 9 30625808 to 30632587 6779 - lincRNA gene predicted gene, 47716
Tssr84206 9 30669450 to 30669455 5 + TSS region transcription start site region 84206