Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:28878145-31048154

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opcml 9 27790775 to 28925410 1134635 + protein coding gene opioid binding protein/cell adhesion molecule-like
Gm48091 9 28794296 to 28954347 160051 - antisense lncRNA gene predicted gene, 48091
Tssr84188 9 28920400 to 28920411 11 + TSS region transcription start site region 84188
Tssr84189 9 28920413 to 28920418 5 + TSS region transcription start site region 84189
Tssr84190 9 28920420 to 28920454 34 + TSS region transcription start site region 84190
Tssr84191 9 28920456 to 28920459 3 + TSS region transcription start site region 84191
Tssr84192 9 28920474 to 28920482 8 + TSS region transcription start site region 84192
Tssr84193 9 28920495 to 28920514 19 + TSS region transcription start site region 84193
Tssr84194 9 28920975 to 28920989 14 + TSS region transcription start site region 84194
Tssr84195 9 28921000 to 28921008 8 + TSS region transcription start site region 84195
Tssr84196 9 28921088 to 28921095 7 + TSS region transcription start site region 84196
Tssr84197 9 28921116 to 28921121 5 + TSS region transcription start site region 84197
Tssr84198 9 28944371 to 28944375 4 + TSS region transcription start site region 84198
D9Mit296 9 28945569 to 28945693 124 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 296
Ntm 9 28994750 to 29963141 968391 - protein coding gene neurotrimin
Tssr88576 9 28994786 to 28994797 11 - TSS region transcription start site region 88576
Tssr88577 9 28996054 to 28996064 10 - TSS region transcription start site region 88577
Tssr88578 9 28996065 to 28996096 31 - TSS region transcription start site region 88578
Tssr88579 9 28996097 to 28996112 15 - TSS region transcription start site region 88579
Tssr88580 9 28996206 to 28996223 17 - TSS region transcription start site region 88580
Tssr88581 9 28996279 to 28996288 9 - TSS region transcription start site region 88581
Tssr88582 9 28996392 to 28996397 5 - TSS region transcription start site region 88582
Tssr88583 9 28996500 to 28996515 15 - TSS region transcription start site region 88583
Tssr84199 9 29014045 to 29014066 21 + TSS region transcription start site region 84199
Cpgi21518 9 29014095 to 29014284 189 CpG island CpG island 21518
Gm15520 9 29059799 to 29070199 10400 + antisense lncRNA gene predicted gene 15520
Tssr88584 9 29179086 to 29179093 7 - TSS region transcription start site region 88584
D9Mit42 9 29321023 to 29321234 211 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 42
Tssr88585 9 29368231 to 29368234 3 - TSS region transcription start site region 88585
Cpgi21519 9 29411731 to 29412839 1108 CpG island CpG island 21519
Tssr88586 9 29411753 to 29411773 20 - TSS region transcription start site region 88586
Tssr88587 9 29411780 to 29411811 31 - TSS region transcription start site region 88587
Tssr88588 9 29411847 to 29411874 27 - TSS region transcription start site region 88588
Tssr88589 9 29412251 to 29412277 26 - TSS region transcription start site region 88589
Tssr88590 9 29412285 to 29412298 13 - TSS region transcription start site region 88590
Tssr88591 9 29412377 to 29412393 16 - TSS region transcription start site region 88591
Tssr88592 9 29412460 to 29412503 43 - TSS region transcription start site region 88592
Tssr88593 9 29412514 to 29412533 19 - TSS region transcription start site region 88593
Tssr88594 9 29412635 to 29412678 43 - TSS region transcription start site region 88594
Tssr84200 9 29442372 to 29442389 17 + TSS region transcription start site region 84200
Tssr84201 9 29442397 to 29442403 6 + TSS region transcription start site region 84201
Tbs2 9 29458674 to 29458818 144 QTL tuberculosis severity 2
D9Mit89 9 29458674 to 29458818 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 89
Tssr88595 9 29468325 to 29468327 2 - TSS region transcription start site region 88595
D9Mit138 9 29489060 to 29489180 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 138
D9Mit244 9 29556772 to 29556918 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 244
D9Mit244.2 9 29556863 to 29557002 139 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 244.2
Gm15521 9 29590484 to 29592510 2026 - sense intronic lncRNA gene predicted gene 15521
Tssr88596 9 29769330 to 29769334 4 - TSS region transcription start site region 88596
Tssr2815 9 29771503 to 29771504 1 + TSS region transcription start site region 2815
Tssr88597 9 29820950 to 29820952 2 - TSS region transcription start site region 88597
Tssr88598 9 29834434 to 29834439 5 - TSS region transcription start site region 88598
Tssr88599 9 29939790 to 29939801 11 - TSS region transcription start site region 88599
Paasd1 9 29949417 to 30285916 336499 QTL peak activity after sleep deprivation 1
Cpgi21520 9 29962373 to 29962886 513 CpG island CpG island 21520
Tssr88600 9 29963035 to 29963046 11 - TSS region transcription start site region 88600
Tssr88601 9 29963092 to 29963103 11 - TSS region transcription start site region 88601
Tssr88602 9 29963112 to 29963141 29 - TSS region transcription start site region 88602
Tssr88603 9 29963145 to 29963154 9 - TSS region transcription start site region 88603
Tssr88604 9 29963205 to 29963210 5 - TSS region transcription start site region 88604
Tssr84202 9 29992123 to 29992124 1 + TSS region transcription start site region 84202
Gm19640 9 30063256 to 30063719 463 - pseudogene predicted gene, 19640
Gm47677 9 30167575 to 30171881 4306 + lincRNA gene predicted gene, 47677
Gm26435 9 30291868 to 30291974 106 - snRNA gene predicted gene, 26435
Gm30933 9 30385980 to 30426976 40996 - bidirectional promoter lncRNA gene predicted gene, 30933
Cpgi21521 9 30426867 to 30427724 857 CpG island CpG island 21521
Tssr84203 9 30427016 to 30427019 3 + TSS region transcription start site region 84203
Tssr84204 9 30427033 to 30427108 75 + TSS region transcription start site region 84204
Snx19 9 30427108 to 30466733 39625 + protein coding gene sorting nexin 19
Tssr84205 9 30438868 to 30438899 31 + TSS region transcription start site region 84205
Obq37 9 30479879 to 30479879 0 QTL obesity QTL 37
Gm47714 9 30489959 to 30490376 417 + pseudogene predicted gene, 47714
D9Mit88 9 30503398 to 30503599 201 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 88
Igan3 9 30503398 to 40654618 10151220 QTL IgA nephropathy 3
Rps2-ps12 9 30512940 to 30513538 598 + pseudogene ribosomal protein S2, pseudogene 12
Tssr2816 9 30563233 to 30563236 3 + TSS region transcription start site region 2816
Gm47716 9 30625808 to 30632587 6779 - lincRNA gene predicted gene, 47716
Tssr84206 9 30669450 to 30669455 5 + TSS region transcription start site region 84206
Gm31013 9 30722035 to 30781479 59444 - lincRNA gene predicted gene, 31013
Tssr84207 9 30736562 to 30736568 6 + TSS region transcription start site region 84207
Gm47717 9 30752621 to 30752882 261 - pseudogene predicted gene, 47717
Tssr88605 9 30781365 to 30781371 6 - TSS region transcription start site region 88605
Tssr88606 9 30781388 to 30781396 8 - TSS region transcription start site region 88606
Tssr88607 9 30781407 to 30781427 20 - TSS region transcription start site region 88607
Gm31140 9 30872563 to 30879928 7365 - lncRNA gene predicted gene, 31140
Adamts15 9 30899155 to 30922452 23297 - protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 15
Tssr88608 9 30921213 to 30921217 4 - TSS region transcription start site region 88608
Cpgi21522 9 30921269 to 30922874 1605 CpG island CpG island 21522
Tssr88609 9 30922549 to 30922567 18 - TSS region transcription start site region 88609
Gm10700 9 30940195 to 30944773 4578 unclassified gene predicted gene 10700
Cpgi21523 9 30942258 to 30943775 1517 CpG island CpG island 21523
Tssr84208 9 30942541 to 30942546 5 + TSS region transcription start site region 84208
Adamts8 9 30942562 to 30963838 21276 + protein coding gene a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 8
Gm29724 9 30981066 to 31032353 51287 - antisense lncRNA gene predicted gene, 29724
Tssr88610 9 31004179 to 31004227 48 - TSS region transcription start site region 88610
Tssr88611 9 31018735 to 31018736 1 - TSS region transcription start site region 88611
Tssr84209 9 31019076 to 31019087 11 + TSS region transcription start site region 84209
4930421P22Rik 9 31028978 to 31029834 856 unclassified gene RIKEN cDNA 4930421P22 gene
Cpgi21524 9 31029828 to 31031318 1490 CpG island CpG island 21524
Tssr88612 9 31029930 to 31029947 17 - TSS region transcription start site region 88612
Tssr88613 9 31030230 to 31030251 21 - TSS region transcription start site region 88613
Tssr88614 9 31030255 to 31030278 23 - TSS region transcription start site region 88614
Tssr88615 9 31030281 to 31030313 32 - TSS region transcription start site region 88615
Tssr84210 9 31030383 to 31030451 68 + TSS region transcription start site region 84210
Tssr84211 9 31030550 to 31030561 11 + TSS region transcription start site region 84211
Tssr84212 9 31030621 to 31030700 79 + TSS region transcription start site region 84212
Zbtb44 9 31030644 to 31075885 45241 + protein coding gene zinc finger and BTB domain containing 44
Tssr84213 9 31030729 to 31030751 22 + TSS region transcription start site region 84213
Tssr84214 9 31030806 to 31030815 9 + TSS region transcription start site region 84214
Tssr84215 9 31041887 to 31041888 1 + TSS region transcription start site region 84215