Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:27176185-28065898

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr88574 9 27187004 to 27187012 8 - TSS region transcription start site region 88574
Tssr84163 9 27191737 to 27191738 1 + TSS region transcription start site region 84163
Gm48801 9 27199590 to 27203298 3708 - lincRNA gene predicted gene, 48801
Gm48803 9 27291197 to 27293344 2147 - lincRNA gene predicted gene, 48803
Cpgi21515 9 27298950 to 27300621 1671 CpG island CpG island 21515
Igsf9b 9 27299204 to 27357546 58342 + protein coding gene immunoglobulin superfamily, member 9B
Tssr84164 9 27299205 to 27299254 49 + TSS region transcription start site region 84164
Tssr84165 9 27317352 to 27317383 31 + TSS region transcription start site region 84165
Tssr84166 9 27349024 to 27349031 7 + TSS region transcription start site region 84166
Tssr88575 9 27375953 to 27375954 1 - TSS region transcription start site region 88575
Gm48858 9 27386267 to 27386617 350 + pseudogene predicted gene, 48858
Tssr84167 9 27396791 to 27396823 32 + TSS region transcription start site region 84167
Spata19 9 27396807 to 27401711 4904 + protein coding gene spermatogenesis associated 19
Tssr84168 9 27397202 to 27397221 19 + TSS region transcription start site region 84168
Tssr84169 9 27397224 to 27397234 10 + TSS region transcription start site region 84169
Tssr84170 9 27397238 to 27397256 18 + TSS region transcription start site region 84170
Gm30791 9 27518888 to 27522491 3603 + lncRNA gene predicted gene, 30791
Gm48901 9 27553480 to 27554957 1477 + lincRNA gene predicted gene, 48901
Gm18585 9 27582837 to 27583392 555 - pseudogene predicted gene, 18585
Gm8106 9 27611604 to 27612119 515 + pseudogene predicted gene 8106
Gm48902 9 27616185 to 27625898 9713 + lincRNA gene predicted gene, 48902
Tssr2814 9 27666422 to 27666424 2 + TSS region transcription start site region 2814
Gm18656 9 27776996 to 27777557 561 + pseudogene predicted gene, 18656
Gm39314 9 27784458 to 27791069 6611 - lncRNA gene predicted gene, 39314
Opcml 9 27790775 to 28925410 1134635 + protein coding gene opioid binding protein/cell adhesion molecule-like
Tssr84171 9 27790973 to 27790976 3 + TSS region transcription start site region 84171
Tssr84172 9 27790978 to 27790991 13 + TSS region transcription start site region 84172
Tssr84173 9 27790992 to 27791003 11 + TSS region transcription start site region 84173
Tssr84174 9 27791196 to 27791207 11 + TSS region transcription start site region 84174
Cpgi21516 9 27791210 to 27791863 653 CpG island CpG island 21516
Tssr84175 9 27791276 to 27791336 60 + TSS region transcription start site region 84175
Gdap8 9 27866118 to 27866489 371 unclassified gene ganglioside-induced differentiation-associated-protein 8
B230219J02Rik 9 27991146 to 27992073 927 unclassified non-coding RNA gene RIKEN cDNA B230219J02 gene
Gm33456 9 28020489 to 28021138 649 - pseudogene predicted gene, 33456