Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:27029458-28546069

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vps26b 9 27007771 to 27030065 22294 - protein coding gene VPS26 retromer complex component B
Cpgi21513 9 27029107 to 27031049 1942 CpG island CpG island 21513
Tssr88569 9 27029988 to 27030004 16 - TSS region transcription start site region 88569
Tssr88570 9 27030010 to 27030114 104 - TSS region transcription start site region 88570
Tssr84161 9 27030159 to 27030197 38 + TSS region transcription start site region 84161
Ncapd3 9 27030175 to 27095315 65140 + protein coding gene non-SMC condensin II complex, subunit D3
Tssr84162 9 27030718 to 27030772 54 + TSS region transcription start site region 84162
6720417O19Rik 9 27095942 to 27097356 1414 unclassified gene RIKEN cDNA 6720417O19 gene
Jam3 9 27097384 to 27155421 58037 - protein coding gene junction adhesion molecule 3
Gm48796 9 27098551 to 27102343 3792 + antisense lncRNA gene predicted gene, 48796
Gm46105 9 27143012 to 27148675 5663 - lncRNA gene predicted gene, 46105
Cpgi21514 9 27154825 to 27155677 852 CpG island CpG island 21514
Tssr88571 9 27155368 to 27155387 19 - TSS region transcription start site region 88571
Tssr88572 9 27155389 to 27155416 27 - TSS region transcription start site region 88572
Tssr88573 9 27155418 to 27155425 7 - TSS region transcription start site region 88573
Tssr88574 9 27187004 to 27187012 8 - TSS region transcription start site region 88574
Tssr84163 9 27191737 to 27191738 1 + TSS region transcription start site region 84163
Gm48801 9 27199590 to 27203298 3708 - lincRNA gene predicted gene, 48801
Gm48803 9 27291197 to 27293344 2147 - lincRNA gene predicted gene, 48803
Cpgi21515 9 27298950 to 27300621 1671 CpG island CpG island 21515
Igsf9b 9 27299204 to 27357546 58342 + protein coding gene immunoglobulin superfamily, member 9B
Tssr84164 9 27299205 to 27299254 49 + TSS region transcription start site region 84164
Tssr84165 9 27317352 to 27317383 31 + TSS region transcription start site region 84165
Tssr84166 9 27349024 to 27349031 7 + TSS region transcription start site region 84166
Tssr88575 9 27375953 to 27375954 1 - TSS region transcription start site region 88575
Gm48858 9 27386267 to 27386617 350 + pseudogene predicted gene, 48858
Tssr84167 9 27396791 to 27396823 32 + TSS region transcription start site region 84167
Spata19 9 27396807 to 27401711 4904 + protein coding gene spermatogenesis associated 19
Tssr84168 9 27397202 to 27397221 19 + TSS region transcription start site region 84168
Tssr84169 9 27397224 to 27397234 10 + TSS region transcription start site region 84169
Tssr84170 9 27397238 to 27397256 18 + TSS region transcription start site region 84170
Gm30791 9 27518888 to 27522491 3603 + lncRNA gene predicted gene, 30791
Gm48901 9 27553480 to 27554957 1477 + lincRNA gene predicted gene, 48901
Gm18585 9 27582837 to 27583392 555 - pseudogene predicted gene, 18585
Gm8106 9 27611604 to 27612119 515 + pseudogene predicted gene 8106
Gm48902 9 27616185 to 27625898 9713 + lincRNA gene predicted gene, 48902
Tssr2814 9 27666422 to 27666424 2 + TSS region transcription start site region 2814
Gm18656 9 27776996 to 27777557 561 + pseudogene predicted gene, 18656
Gm39314 9 27784458 to 27791069 6611 - lncRNA gene predicted gene, 39314
Opcml 9 27790775 to 28925410 1134635 + protein coding gene opioid binding protein/cell adhesion molecule-like
Tssr84171 9 27790973 to 27790976 3 + TSS region transcription start site region 84171
Tssr84172 9 27790978 to 27790991 13 + TSS region transcription start site region 84172
Tssr84173 9 27790992 to 27791003 11 + TSS region transcription start site region 84173
Tssr84174 9 27791196 to 27791207 11 + TSS region transcription start site region 84174
Cpgi21516 9 27791210 to 27791863 653 CpG island CpG island 21516
Tssr84175 9 27791276 to 27791336 60 + TSS region transcription start site region 84175
Gdap8 9 27866118 to 27866489 371 unclassified gene ganglioside-induced differentiation-associated-protein 8
B230219J02Rik 9 27991146 to 27992073 927 unclassified non-coding RNA gene RIKEN cDNA B230219J02 gene
Gm33456 9 28020489 to 28021138 649 - pseudogene predicted gene, 33456
Tssr84176 9 28148281 to 28148284 3 + TSS region transcription start site region 84176
Tssr84177 9 28185439 to 28185464 25 + TSS region transcription start site region 84177
Gm15606 9 28197887 to 28199521 1634 + sense intronic lncRNA gene predicted gene 15606
Tssr84178 9 28256985 to 28256989 4 + TSS region transcription start site region 84178
Gm44316 9 28292748 to 28292844 96 + miRNA gene predicted gene, 44316
Gm39313 9 28364421 to 28402525 38104 - lncRNA gene predicted gene, 39313
Cpgi21517 9 28402854 to 28403954 1100 CpG island CpG island 21517
Tssr84179 9 28403295 to 28403339 44 + TSS region transcription start site region 84179
Tssr84180 9 28403480 to 28403496 16 + TSS region transcription start site region 84180
Tssr84181 9 28403513 to 28403536 23 + TSS region transcription start site region 84181
Tssr84182 9 28403538 to 28403552 14 + TSS region transcription start site region 84182
Tssr84183 9 28459982 to 28459987 5 + TSS region transcription start site region 84183
Tssr84184 9 28511022 to 28511034 12 + TSS region transcription start site region 84184