Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:26564458-29011069

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151 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48393 9 26719838 to 26731861 12023 - lincRNA gene predicted gene, 48393
Cpgi21509 9 26733220 to 26734582 1362 CpG island CpG island 21509
Tssr84155 9 26733743 to 26733815 72 + TSS region transcription start site region 84155
B3gat1 9 26733783 to 26761350 27567 + protein coding gene beta-1,3-glucuronyltransferase 1 (glucuronosyltransferase P)
Tssr84156 9 26733845 to 26733856 11 + TSS region transcription start site region 84156
Cpgi21510 9 26755501 to 26756138 637 CpG island CpG island 21510
Tssr2811 9 26760383 to 26760392 9 + TSS region transcription start site region 2811
Glb1l2 9 26763044 to 26806468 43424 - protein coding gene galactosidase, beta 1-like 2
Tssr88533 9 26791881 to 26791886 5 - TSS region transcription start site region 88533
Tssr88534 9 26791891 to 26791920 29 - TSS region transcription start site region 88534
Tssr88535 9 26791925 to 26791928 3 - TSS region transcription start site region 88535
Tssr88536 9 26791940 to 26791943 3 - TSS region transcription start site region 88536
Tssr2812 9 26792000 to 26792002 2 - TSS region transcription start site region 2812
Tssr88537 9 26802563 to 26802590 27 - TSS region transcription start site region 88537
Tssr88538 9 26802599 to 26802606 7 - TSS region transcription start site region 88538
Tssr88539 9 26803629 to 26803642 13 - TSS region transcription start site region 88539
Tssr88540 9 26803661 to 26803668 7 - TSS region transcription start site region 88540
Tssr88541 9 26804445 to 26804457 12 - TSS region transcription start site region 88541
Tssr88542 9 26804485 to 26804492 7 - TSS region transcription start site region 88542
Cpgi21511 9 26806277 to 26806706 429 CpG island CpG island 21511
Tssr88543 9 26806384 to 26806461 77 - TSS region transcription start site region 88543
Glb1l3 9 26817953 to 26860890 42937 - protein coding gene galactosidase, beta 1 like 3
Tssr88544 9 26829488 to 26829496 8 - TSS region transcription start site region 88544
Tssr88545 9 26829510 to 26829525 15 - TSS region transcription start site region 88545
Tssr88546 9 26829528 to 26829538 10 - TSS region transcription start site region 88546
Tssr88547 9 26860623 to 26860639 16 - TSS region transcription start site region 88547
Tssr88548 9 26860649 to 26860697 48 - TSS region transcription start site region 88548
Tssr88549 9 26860849 to 26860868 19 - TSS region transcription start site region 88549
Tssr88550 9 26860878 to 26860894 16 - TSS region transcription start site region 88550
Tssr88551 9 26860901 to 26860912 11 - TSS region transcription start site region 88551
Tssr88552 9 26861956 to 26861972 16 - TSS region transcription start site region 88552
Tssr88553 9 26862001 to 26862008 7 - TSS region transcription start site region 88553
Gm1110 9 26879567 to 26923111 43544 - protein coding gene predicted gene 1110
Tssr84157 9 26879677 to 26879682 5 + TSS region transcription start site region 84157
Tssr88554 9 26880572 to 26880574 2 - TSS region transcription start site region 88554
Tssr88555 9 26889085 to 26889087 2 - TSS region transcription start site region 88555
Tssr88556 9 26896994 to 26896997 3 - TSS region transcription start site region 88556
Tssr88557 9 26911815 to 26911819 4 - TSS region transcription start site region 88557
Tssr88558 9 26917188 to 26917191 3 - TSS region transcription start site region 88558
Tssr88559 9 26920090 to 26920096 6 - TSS region transcription start site region 88559
Tssr88560 9 26920875 to 26920880 5 - TSS region transcription start site region 88560
Tssr88561 9 26923040 to 26923051 11 - TSS region transcription start site region 88561
Tssr88562 9 26923060 to 26923086 26 - TSS region transcription start site region 88562
Tssr88563 9 26923092 to 26923095 3 - TSS region transcription start site region 88563
Tssr88564 9 26923133 to 26923148 15 - TSS region transcription start site region 88564
Tssr2813 9 26923192 to 26923196 4 - TSS region transcription start site region 2813
Tssr88565 9 26924186 to 26924195 9 - TSS region transcription start site region 88565
Tssr84158 9 26924460 to 26924500 40 + TSS region transcription start site region 84158
Gm5120 9 26960149 to 26962559 2410 - pseudogene predicted gene 5120
Acad8 9 26974138 to 26999551 25413 - protein coding gene acyl-Coenzyme A dehydrogenase family, member 8
Tssr88566 9 26977853 to 26977861 8 - TSS region transcription start site region 88566
Tssr88567 9 26977903 to 26977909 6 - TSS region transcription start site region 88567
Cpgi21512 9 26999071 to 26999734 663 CpG island CpG island 21512
Bglu19 9 26999472 to 26999472 0 QTL blood glucose level 19
Tssr88568 9 26999491 to 26999557 66 - TSS region transcription start site region 88568
Tssr84159 9 26999668 to 26999686 18 + TSS region transcription start site region 84159
Tssr84160 9 26999699 to 26999733 34 + TSS region transcription start site region 84160
Thyn1 9 26999710 to 27007336 7626 + protein coding gene thymocyte nuclear protein 1
Vps26b 9 27007771 to 27030065 22294 - protein coding gene VPS26 retromer complex component B
Gm48673 9 27021553 to 27024921 3368 - unclassified gene predicted gene, 48673
Cpgi21513 9 27029107 to 27031049 1942 CpG island CpG island 21513
Tssr88569 9 27029988 to 27030004 16 - TSS region transcription start site region 88569
Tssr88570 9 27030010 to 27030114 104 - TSS region transcription start site region 88570
Tssr84161 9 27030159 to 27030197 38 + TSS region transcription start site region 84161
Ncapd3 9 27030175 to 27095315 65140 + protein coding gene non-SMC condensin II complex, subunit D3
Tssr84162 9 27030718 to 27030772 54 + TSS region transcription start site region 84162
6720417O19Rik 9 27095942 to 27097356 1414 unclassified gene RIKEN cDNA 6720417O19 gene
Jam3 9 27097384 to 27155421 58037 - protein coding gene junction adhesion molecule 3
Gm48796 9 27098551 to 27102343 3792 + antisense lncRNA gene predicted gene, 48796
Gm46105 9 27143012 to 27148675 5663 - lncRNA gene predicted gene, 46105
Cpgi21514 9 27154825 to 27155677 852 CpG island CpG island 21514
Tssr88571 9 27155368 to 27155387 19 - TSS region transcription start site region 88571
Tssr88572 9 27155389 to 27155416 27 - TSS region transcription start site region 88572
Tssr88573 9 27155418 to 27155425 7 - TSS region transcription start site region 88573
Tssr88574 9 27187004 to 27187012 8 - TSS region transcription start site region 88574
Tssr84163 9 27191737 to 27191738 1 + TSS region transcription start site region 84163
Gm48801 9 27199590 to 27203298 3708 - lincRNA gene predicted gene, 48801
Gm48803 9 27291197 to 27293344 2147 - lincRNA gene predicted gene, 48803
Cpgi21515 9 27298950 to 27300621 1671 CpG island CpG island 21515
Igsf9b 9 27299204 to 27357546 58342 + protein coding gene immunoglobulin superfamily, member 9B
Tssr84164 9 27299205 to 27299254 49 + TSS region transcription start site region 84164
Tssr84165 9 27317352 to 27317383 31 + TSS region transcription start site region 84165
Tssr84166 9 27349024 to 27349031 7 + TSS region transcription start site region 84166
Tssr88575 9 27375953 to 27375954 1 - TSS region transcription start site region 88575
Gm48858 9 27386267 to 27386617 350 + pseudogene predicted gene, 48858
Tssr84167 9 27396791 to 27396823 32 + TSS region transcription start site region 84167
Spata19 9 27396807 to 27401711 4904 + protein coding gene spermatogenesis associated 19
Tssr84168 9 27397202 to 27397221 19 + TSS region transcription start site region 84168
Tssr84169 9 27397224 to 27397234 10 + TSS region transcription start site region 84169
Tssr84170 9 27397238 to 27397256 18 + TSS region transcription start site region 84170
Gm30791 9 27518888 to 27522491 3603 + lncRNA gene predicted gene, 30791
Gm48901 9 27553480 to 27554957 1477 + lincRNA gene predicted gene, 48901
Gm18585 9 27582837 to 27583392 555 - pseudogene predicted gene, 18585
Gm8106 9 27611604 to 27612119 515 + pseudogene predicted gene 8106
Gm48902 9 27616185 to 27625898 9713 + lincRNA gene predicted gene, 48902
Tssr2814 9 27666422 to 27666424 2 + TSS region transcription start site region 2814
Gm18656 9 27776996 to 27777557 561 + pseudogene predicted gene, 18656
Gm39314 9 27784458 to 27791069 6611 - lncRNA gene predicted gene, 39314
Opcml 9 27790775 to 28925410 1134635 + protein coding gene opioid binding protein/cell adhesion molecule-like
Tssr84171 9 27790973 to 27790976 3 + TSS region transcription start site region 84171
Tssr84172 9 27790978 to 27790991 13 + TSS region transcription start site region 84172
Tssr84173 9 27790992 to 27791003 11 + TSS region transcription start site region 84173
Tssr84174 9 27791196 to 27791207 11 + TSS region transcription start site region 84174
Cpgi21516 9 27791210 to 27791863 653 CpG island CpG island 21516
Tssr84175 9 27791276 to 27791336 60 + TSS region transcription start site region 84175
Gdap8 9 27866118 to 27866489 371 unclassified gene ganglioside-induced differentiation-associated-protein 8
B230219J02Rik 9 27991146 to 27992073 927 unclassified non-coding RNA gene RIKEN cDNA B230219J02 gene
Gm33456 9 28020489 to 28021138 649 - pseudogene predicted gene, 33456
Tssr84176 9 28148281 to 28148284 3 + TSS region transcription start site region 84176
Tssr84177 9 28185439 to 28185464 25 + TSS region transcription start site region 84177
Gm15606 9 28197887 to 28199521 1634 + sense intronic lncRNA gene predicted gene 15606
Tssr84178 9 28256985 to 28256989 4 + TSS region transcription start site region 84178
Gm44316 9 28292748 to 28292844 96 + miRNA gene predicted gene, 44316
Gm39313 9 28364421 to 28402525 38104 - lncRNA gene predicted gene, 39313
Cpgi21517 9 28402854 to 28403954 1100 CpG island CpG island 21517
Tssr84179 9 28403295 to 28403339 44 + TSS region transcription start site region 84179
Tssr84180 9 28403480 to 28403496 16 + TSS region transcription start site region 84180
Tssr84181 9 28403513 to 28403536 23 + TSS region transcription start site region 84181
Tssr84182 9 28403538 to 28403552 14 + TSS region transcription start site region 84182
Tssr84183 9 28459982 to 28459987 5 + TSS region transcription start site region 84183
Tssr84184 9 28511022 to 28511034 12 + TSS region transcription start site region 84184
D9Mit63 9 28555677 to 28555778 101 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 63
D9Mit65 9 28592037 to 28592161 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 65
Obq5 9 28592037 to 41888030 13295993 QTL obesity QTL 5
D9Mit64 9 28592039 to 28592228 189 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 64
Tssr84185 9 28645850 to 28645853 3 + TSS region transcription start site region 84185
Tssr84186 9 28674995 to 28675001 6 + TSS region transcription start site region 84186
Tssr84187 9 28781186 to 28781190 4 + TSS region transcription start site region 84187
Gm48091 9 28794296 to 28954347 160051 - antisense lncRNA gene predicted gene, 48091
D9Mit324 9 28819187 to 28819432 245 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 324
Tssr84188 9 28920400 to 28920411 11 + TSS region transcription start site region 84188
Tssr84189 9 28920413 to 28920418 5 + TSS region transcription start site region 84189
Tssr84190 9 28920420 to 28920454 34 + TSS region transcription start site region 84190
Tssr84191 9 28920456 to 28920459 3 + TSS region transcription start site region 84191
Tssr84192 9 28920474 to 28920482 8 + TSS region transcription start site region 84192
Tssr84193 9 28920495 to 28920514 19 + TSS region transcription start site region 84193
Tssr84194 9 28920975 to 28920989 14 + TSS region transcription start site region 84194
Tssr84195 9 28921000 to 28921008 8 + TSS region transcription start site region 84195
Tssr84196 9 28921088 to 28921095 7 + TSS region transcription start site region 84196
Tssr84197 9 28921116 to 28921121 5 + TSS region transcription start site region 84197
Tssr84198 9 28944371 to 28944375 4 + TSS region transcription start site region 84198
D9Mit296 9 28945569 to 28945693 124 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 296
Ntm 9 28994750 to 29963141 968391 - protein coding gene neurotrimin
Tssr88576 9 28994786 to 28994797 11 - TSS region transcription start site region 88576
Tssr88577 9 28996054 to 28996064 10 - TSS region transcription start site region 88577
Tssr88578 9 28996065 to 28996096 31 - TSS region transcription start site region 88578
Tssr88579 9 28996097 to 28996112 15 - TSS region transcription start site region 88579
Tssr88580 9 28996206 to 28996223 17 - TSS region transcription start site region 88580
Tssr88581 9 28996279 to 28996288 9 - TSS region transcription start site region 88581
Tssr88582 9 28996392 to 28996397 5 - TSS region transcription start site region 88582
Tssr88583 9 28996500 to 28996515 15 - TSS region transcription start site region 88583