Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:24951547-26134110

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21504 9 24952593 to 24952794 201 CpG island CpG island 21504
Gm48255 9 24952973 to 24953299 326 + pseudogene predicted gene, 48255
Gm18377 9 24957580 to 24958135 555 - pseudogene predicted gene, 18377
Gm23893 9 24964536 to 24964669 133 + snoRNA gene predicted gene, 23893
E130101E03Rik 9 24974201 to 24990874 16673 + lincRNA gene RIKEN cDNA E130101E03 gene
Bmiq8 9 25000000 to 69000000 44000000 QTL body mass index QTL 8
Gm48256 9 25057050 to 25062599 5549 + lincRNA gene predicted gene, 48256
Gm10181 9 25089422 to 25089490 68 + protein coding gene predicted gene 10181
Gm10180 9 25101404 to 25101481 77 - pseudogene predicted gene 10180
Tssr88517 9 25101516 to 25101520 4 - TSS region transcription start site region 88517
Herpud2 9 25108128 to 25151781 43653 - protein coding gene HERPUD family member 2
Tssr84118 9 25147422 to 25147433 11 + TSS region transcription start site region 84118
Cpgi21505 9 25150888 to 25152178 1290 CpG island CpG island 21505
Tssr88518 9 25151205 to 25151239 34 - TSS region transcription start site region 88518
Tssr88519 9 25151241 to 25151252 11 - TSS region transcription start site region 88519
Tssr88520 9 25151610 to 25151626 16 - TSS region transcription start site region 88520
Tssr88521 9 25151645 to 25151654 9 - TSS region transcription start site region 88521
Tssr88522 9 25151665 to 25151676 11 - TSS region transcription start site region 88522
Tssr88523 9 25151687 to 25151704 17 - TSS region transcription start site region 88523
Tssr88524 9 25151715 to 25151757 42 - TSS region transcription start site region 88524
Tssr88525 9 25151772 to 25151840 68 - TSS region transcription start site region 88525
Tssr84119 9 25151992 to 25152035 43 + TSS region transcription start site region 84119
Gm30066 9 25181181 to 25202821 21640 + lncRNA gene predicted gene, 30066
Tssr88526 9 25185984 to 25186025 41 - TSS region transcription start site region 88526
Tssr84120 9 25186700 to 25186711 11 + TSS region transcription start site region 84120
Tssr84121 9 25186728 to 25186739 11 + TSS region transcription start site region 84121
Tssr88527 9 25211062 to 25211075 13 - TSS region transcription start site region 88527
Gm8031 9 25228447 to 25229069 622 - pseudogene predicted gene 8031
Gm29642 9 25240486 to 25245580 5094 + lincRNA gene predicted gene 29642
9130004C02Rik 9 25248127 to 25252416 4289 unclassified gene RIKEN cDNA 9130004C02 gene
Cpgi21506 9 25251672 to 25253513 1841 CpG island CpG island 21506
Tssr88528 9 25251984 to 25251997 13 - TSS region transcription start site region 88528
Tssr88529 9 25252022 to 25252084 62 - TSS region transcription start site region 88529
Tssr84122 9 25252200 to 25252233 33 + TSS region transcription start site region 84122
Tssr88530 9 25252371 to 25252387 16 - TSS region transcription start site region 88530
Tssr88531 9 25252397 to 25252415 18 - TSS region transcription start site region 88531
Sept7 9 25252439 to 25308571 56132 + protein coding gene septin 7
Tssr84123 9 25252505 to 25252516 11 + TSS region transcription start site region 84123
Tssr84124 9 25252589 to 25252591 2 + TSS region transcription start site region 84124
Tssr84125 9 25252638 to 25252659 21 + TSS region transcription start site region 84125
Tssr84126 9 25252878 to 25252900 22 + TSS region transcription start site region 84126
Tssr84127 9 25252910 to 25252930 20 + TSS region transcription start site region 84127
Tssr84128 9 25253754 to 25253769 15 + TSS region transcription start site region 84128
Tssr84129 9 25255255 to 25255280 25 + TSS region transcription start site region 84129
A1300008O04Rik 9 25259455 to 25262656 3201 unclassified gene RIKEN cDNA A1300008O04 gene
Tssr84130 9 25263177 to 25263190 13 + TSS region transcription start site region 84130
Tssr2810 9 25263207 to 25263220 13 + TSS region transcription start site region 2810
Tssr84131 9 25265407 to 25265433 26 + TSS region transcription start site region 84131
Gm48272 9 25274802 to 25275475 673 - pseudogene predicted gene, 48272
Tssr84132 9 25277552 to 25277614 62 + TSS region transcription start site region 84132
Tssr84133 9 25288244 to 25288265 21 + TSS region transcription start site region 84133
Tssr84134 9 25288272 to 25288294 22 + TSS region transcription start site region 84134
Tssr84135 9 25293676 to 25293767 91 + TSS region transcription start site region 84135
Tssr84136 9 25297802 to 25297826 24 + TSS region transcription start site region 84136
Tssr84137 9 25297827 to 25297846 19 + TSS region transcription start site region 84137
Tssr84138 9 25297875 to 25297883 8 + TSS region transcription start site region 84138
Tssr84139 9 25299480 to 25299519 39 + TSS region transcription start site region 84139
Tssr84140 9 25301465 to 25301478 13 + TSS region transcription start site region 84140
Tssr84141 9 25303733 to 25303766 33 + TSS region transcription start site region 84141
Tssr84142 9 25306179 to 25306198 19 + TSS region transcription start site region 84142
Tssr84143 9 25307791 to 25307800 9 + TSS region transcription start site region 84143
Tssr84144 9 25308031 to 25308037 6 + TSS region transcription start site region 84144
Gm18891 9 25349498 to 25351661 2163 + pseudogene predicted gene, 18891
D9Mit223 9 25365747 to 25366011 264 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 223
Gm8049 9 25450462 to 25452211 1749 + pseudogene predicted gene 8049
Cpgi21507 9 25481262 to 25482104 842 CpG island CpG island 21507
Eepd1 9 25481547 to 25604110 122563 + protein coding gene endonuclease/exonuclease/phosphatase family domain containing 1
Tssr84145 9 25481551 to 25481562 11 + TSS region transcription start site region 84145
Tssr84146 9 25481590 to 25481612 22 + TSS region transcription start site region 84146
Tssr84147 9 25481623 to 25481634 11 + TSS region transcription start site region 84147
Cpgi21508 9 25482603 to 25482807 204 CpG island CpG island 21508
Tssr84148 9 25491129 to 25491135 6 + TSS region transcription start site region 84148
Tssr84149 9 25504409 to 25504424 15 + TSS region transcription start site region 84149
Tssr84150 9 25504430 to 25504451 21 + TSS region transcription start site region 84150
Tssr84151 9 25515268 to 25515272 4 + TSS region transcription start site region 84151
Gm25861 9 25539097 to 25539205 108 - snoRNA gene predicted gene, 25861
Tssr88532 9 25541425 to 25541434 9 - TSS region transcription start site region 88532
Tssr84152 9 25562676 to 25562705 29 + TSS region transcription start site region 84152
Gm25346 9 25569678 to 25569805 127 - snoRNA gene predicted gene, 25346
Tssr84153 9 25570610 to 25570621 11 + TSS region transcription start site region 84153
Tssr84154 9 25570623 to 25570633 10 + TSS region transcription start site region 84154
Gm48330 9 25684995 to 25685363 368 - pseudogene predicted gene, 48330
Gm48331 9 25757555 to 25757825 270 + pseudogene predicted gene, 48331
Gm48337 9 25811546 to 25811747 201 - pseudogene predicted gene, 48337
Gm26190 9 25812855 to 25812975 120 - miRNA gene predicted gene, 26190
Gm48362 9 25855315 to 25859652 4337 - lincRNA gene predicted gene, 48362
Gm39312 9 26029562 to 26032713 3151 - lincRNA gene predicted gene, 39312
D9Mit221 9 26091913 to 26092036 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 221