Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:23452047-25801293

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmper 9 23223076 to 23485200 262124 + protein coding gene BMP-binding endothelial regulator
D9Mit363 9 23487644 to 23487770 126 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-363
Gm39311 9 23581274 to 23587205 5931 + lncRNA gene predicted gene, 39311
4930539C01Rik 9 23749901 to 23750307 406 unclassified gene RIKEN cDNA 4930539C01 gene
Gm3011 9 23776492 to 23777073 581 + pseudogene predicted gene 3011
D9Mit85 9 23792328 to 23792446 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 85
Tssr84110 9 23799147 to 23799155 8 + TSS region transcription start site region 84110
Gm47638 9 23876783 to 23877160 377 + pseudogene predicted gene, 47638
Gm3028 9 23903900 to 23904998 1098 + pseudogene predicted gene 3028
Gm47663 9 23917102 to 23940342 23240 - lincRNA gene predicted gene, 47663
Gm47668 9 24017894 to 24018159 265 - pseudogene predicted gene, 47668
Gm47670 9 24091643 to 24091902 259 - pseudogene predicted gene, 47670
Npsr1 9 24097996 to 24316398 218402 + protein coding gene neuropeptide S receptor 1
Gm47674 9 24284873 to 24287841 2968 - unclassified gene predicted gene, 47674
Gm15600 9 24296139 to 24300257 4118 - antisense lncRNA gene predicted gene 15600
Cpgi21496 9 24302069 to 24302491 422 CpG island CpG island 21496
Tssr88501 9 24314819 to 24314822 3 - TSS region transcription start site region 88501
Tssr84111 9 24341653 to 24341663 10 + TSS region transcription start site region 84111
Gm10701 9 24341657 to 24418709 77052 + antisense lncRNA gene predicted gene 10701
Tssr84112 9 24341716 to 24341719 3 + TSS region transcription start site region 84112
Gm22380 9 24351118 to 24351212 94 + snoRNA gene predicted gene, 22380
Tssr84113 9 24368143 to 24368150 7 + TSS region transcription start site region 84113
Dpy19l1 9 24411776 to 24503140 91364 - protein coding gene dpy-19-like 1 (C. elegans)
Tssr88502 9 24412469 to 24412474 5 - TSS region transcription start site region 88502
Cpgi21497 9 24502443 to 24503818 1375 CpG island CpG island 21497
Tssr88503 9 24503127 to 24503197 70 - TSS region transcription start site region 88503
Tssr88504 9 24503199 to 24503231 32 - TSS region transcription start site region 88504
Tssr88505 9 24503275 to 24503292 17 - TSS region transcription start site region 88505
Tssr88506 9 24503319 to 24503328 9 - TSS region transcription start site region 88506
Tssr88507 9 24503333 to 24503343 10 - TSS region transcription start site region 88507
Gm47772 9 24503449 to 24505585 2136 + bidirectional promoter lncRNA gene predicted gene, 47772
Tssr84114 9 24503497 to 24503512 15 + TSS region transcription start site region 84114
Tssr84115 9 24542071 to 24542097 26 + TSS region transcription start site region 84115
Tssr88508 9 24542104 to 24542124 20 - TSS region transcription start site region 88508
Dpy19l2 9 24557047 to 24696293 139246 - protein coding gene dpy-19-like 2 (C. elegans)
Tssr84116 9 24583986 to 24583991 5 + TSS region transcription start site region 84116
Tssr84117 9 24625191 to 24625201 10 + TSS region transcription start site region 84117
Cypt4 9 24625196 to 24625824 628 + protein coding gene cysteine-rich perinuclear theca 4
Cpgi21498 9 24625364 to 24625526 162 CpG island CpG island 21498
Tssr88509 9 24695557 to 24695558 1 - TSS region transcription start site region 88509
Cpgi21499 9 24695765 to 24696471 706 CpG island CpG island 21499
Tssr88510 9 24696258 to 24696308 50 - TSS region transcription start site region 88510
Tbx20 9 24720812 to 24774303 53491 - protein coding gene T-box 20
Tssr88511 9 24723003 to 24723006 3 - TSS region transcription start site region 88511
Tssr88512 9 24724789 to 24724793 4 - TSS region transcription start site region 88512
Tssr88513 9 24745331 to 24745332 1 - TSS region transcription start site region 88513
Tssr88514 9 24765444 to 24765449 5 - TSS region transcription start site region 88514
Cpgi21500 9 24770086 to 24770929 843 CpG island CpG island 21500
Tssr88515 9 24773178 to 24773182 4 - TSS region transcription start site region 88515
Cpgi21501 9 24773699 to 24774744 1045 CpG island CpG island 21501
Tssr88516 9 24774276 to 24774291 15 - TSS region transcription start site region 88516
Gm29824 9 24775724 to 24795894 20170 + lincRNA gene predicted gene, 29824
Cpgi21502 9 24777324 to 24778167 843 CpG island CpG island 21502
Cpgi21503 9 24780745 to 24781481 736 CpG island CpG island 21503
Amd-ps6 9 24826343 to 24827345 1002 - pseudogene S-adenosylmethionine decarboxylase, pseudogene 6
D9Mit222.1 9 24893793 to 24893912 119 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 222.1
D9Mit222 9 24893905 to 24894055 150 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 222
Tssr2809 9 24896853 to 24896854 1 + TSS region transcription start site region 2809
Gm40509 9 24926971 to 24945079 18108 - lncRNA gene predicted gene, 40509
Cpgi21504 9 24952593 to 24952794 201 CpG island CpG island 21504
Gm48255 9 24952973 to 24953299 326 + pseudogene predicted gene, 48255
Gm18377 9 24957580 to 24958135 555 - pseudogene predicted gene, 18377
Gm23893 9 24964536 to 24964669 133 + snoRNA gene predicted gene, 23893
E130101E03Rik 9 24974201 to 24990874 16673 + lincRNA gene RIKEN cDNA E130101E03 gene
Bmiq8 9 25000000 to 69000000 44000000 QTL body mass index QTL 8
Gm48256 9 25057050 to 25062599 5549 + lincRNA gene predicted gene, 48256
Gm10181 9 25089422 to 25089490 68 + protein coding gene predicted gene 10181
Gm10180 9 25101404 to 25101481 77 - pseudogene predicted gene 10180
Tssr88517 9 25101516 to 25101520 4 - TSS region transcription start site region 88517
Herpud2 9 25108128 to 25151781 43653 - protein coding gene HERPUD family member 2
Tssr84118 9 25147422 to 25147433 11 + TSS region transcription start site region 84118
Cpgi21505 9 25150888 to 25152178 1290 CpG island CpG island 21505
Tssr88518 9 25151205 to 25151239 34 - TSS region transcription start site region 88518
Tssr88519 9 25151241 to 25151252 11 - TSS region transcription start site region 88519
Tssr88520 9 25151610 to 25151626 16 - TSS region transcription start site region 88520
Tssr88521 9 25151645 to 25151654 9 - TSS region transcription start site region 88521
Tssr88522 9 25151665 to 25151676 11 - TSS region transcription start site region 88522
Tssr88523 9 25151687 to 25151704 17 - TSS region transcription start site region 88523
Tssr88524 9 25151715 to 25151757 42 - TSS region transcription start site region 88524
Tssr88525 9 25151772 to 25151840 68 - TSS region transcription start site region 88525
Tssr84119 9 25151992 to 25152035 43 + TSS region transcription start site region 84119
Gm30066 9 25181181 to 25202821 21640 + lncRNA gene predicted gene, 30066
Tssr88526 9 25185984 to 25186025 41 - TSS region transcription start site region 88526
Tssr84120 9 25186700 to 25186711 11 + TSS region transcription start site region 84120
Tssr84121 9 25186728 to 25186739 11 + TSS region transcription start site region 84121
Tssr88527 9 25211062 to 25211075 13 - TSS region transcription start site region 88527
Gm8031 9 25228447 to 25229069 622 - pseudogene predicted gene 8031
Gm29642 9 25240486 to 25245580 5094 + lincRNA gene predicted gene 29642
9130004C02Rik 9 25248127 to 25252416 4289 unclassified gene RIKEN cDNA 9130004C02 gene
Cpgi21506 9 25251672 to 25253513 1841 CpG island CpG island 21506
Tssr88528 9 25251984 to 25251997 13 - TSS region transcription start site region 88528
Tssr88529 9 25252022 to 25252084 62 - TSS region transcription start site region 88529
Tssr84122 9 25252200 to 25252233 33 + TSS region transcription start site region 84122
Tssr88530 9 25252371 to 25252387 16 - TSS region transcription start site region 88530
Tssr88531 9 25252397 to 25252415 18 - TSS region transcription start site region 88531
Sept7 9 25252439 to 25308571 56132 + protein coding gene septin 7
Tssr84123 9 25252505 to 25252516 11 + TSS region transcription start site region 84123
Tssr84124 9 25252589 to 25252591 2 + TSS region transcription start site region 84124
Tssr84125 9 25252638 to 25252659 21 + TSS region transcription start site region 84125
Tssr84126 9 25252878 to 25252900 22 + TSS region transcription start site region 84126
Tssr84127 9 25252910 to 25252930 20 + TSS region transcription start site region 84127
Tssr84128 9 25253754 to 25253769 15 + TSS region transcription start site region 84128
Tssr84129 9 25255255 to 25255280 25 + TSS region transcription start site region 84129
A1300008O04Rik 9 25259455 to 25262656 3201 unclassified gene RIKEN cDNA A1300008O04 gene
Tssr84130 9 25263177 to 25263190 13 + TSS region transcription start site region 84130
Tssr2810 9 25263207 to 25263220 13 + TSS region transcription start site region 2810
Tssr84131 9 25265407 to 25265433 26 + TSS region transcription start site region 84131
Gm48272 9 25274802 to 25275475 673 - pseudogene predicted gene, 48272
Tssr84132 9 25277552 to 25277614 62 + TSS region transcription start site region 84132
Tssr84133 9 25288244 to 25288265 21 + TSS region transcription start site region 84133
Tssr84134 9 25288272 to 25288294 22 + TSS region transcription start site region 84134
Tssr84135 9 25293676 to 25293767 91 + TSS region transcription start site region 84135
Tssr84136 9 25297802 to 25297826 24 + TSS region transcription start site region 84136
Tssr84137 9 25297827 to 25297846 19 + TSS region transcription start site region 84137
Tssr84138 9 25297875 to 25297883 8 + TSS region transcription start site region 84138
Tssr84139 9 25299480 to 25299519 39 + TSS region transcription start site region 84139
Tssr84140 9 25301465 to 25301478 13 + TSS region transcription start site region 84140
Tssr84141 9 25303733 to 25303766 33 + TSS region transcription start site region 84141
Tssr84142 9 25306179 to 25306198 19 + TSS region transcription start site region 84142
Tssr84143 9 25307791 to 25307800 9 + TSS region transcription start site region 84143
Tssr84144 9 25308031 to 25308037 6 + TSS region transcription start site region 84144
Gm18891 9 25349498 to 25351661 2163 + pseudogene predicted gene, 18891
D9Mit223 9 25365747 to 25366011 264 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 223
Gm8049 9 25450462 to 25452211 1749 + pseudogene predicted gene 8049
Cpgi21507 9 25481262 to 25482104 842 CpG island CpG island 21507
Eepd1 9 25481547 to 25604110 122563 + protein coding gene endonuclease/exonuclease/phosphatase family domain containing 1
Tssr84145 9 25481551 to 25481562 11 + TSS region transcription start site region 84145
Tssr84146 9 25481590 to 25481612 22 + TSS region transcription start site region 84146
Tssr84147 9 25481623 to 25481634 11 + TSS region transcription start site region 84147
Cpgi21508 9 25482603 to 25482807 204 CpG island CpG island 21508
Tssr84148 9 25491129 to 25491135 6 + TSS region transcription start site region 84148
Tssr84149 9 25504409 to 25504424 15 + TSS region transcription start site region 84149
Tssr84150 9 25504430 to 25504451 21 + TSS region transcription start site region 84150
Tssr84151 9 25515268 to 25515272 4 + TSS region transcription start site region 84151
Gm25861 9 25539097 to 25539205 108 - snoRNA gene predicted gene, 25861
Tssr88532 9 25541425 to 25541434 9 - TSS region transcription start site region 88532
Tssr84152 9 25562676 to 25562705 29 + TSS region transcription start site region 84152
Gm25346 9 25569678 to 25569805 127 - snoRNA gene predicted gene, 25346
Tssr84153 9 25570610 to 25570621 11 + TSS region transcription start site region 84153
Tssr84154 9 25570623 to 25570633 10 + TSS region transcription start site region 84154
Gm48330 9 25684995 to 25685363 368 - pseudogene predicted gene, 48330
Gm48331 9 25757555 to 25757825 270 + pseudogene predicted gene, 48331