Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:22149737-23190516

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21480 9 22156601 to 22158168 1567 CpG island CpG island 21480
Tssr84078 9 22156838 to 22156881 43 + TSS region transcription start site region 84078
Pigyl 9 22156846 to 22158355 1509 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class Y-like
Tssr84079 9 22156882 to 22156896 14 + TSS region transcription start site region 84079
Tssr84080 9 22156903 to 22156914 11 + TSS region transcription start site region 84080
Cpgi21481 9 22164613 to 22165326 713 CpG island CpG island 21481
Gm18227 9 22169688 to 22170504 816 + pseudogene predicted gene, 18227
Rpl15-ps3 9 22185607 to 22186221 614 - pseudogene ribosomal protein L15, pseudogene 3
Tssr88477 9 22186259 to 22186260 1 - TSS region transcription start site region 88477
Cpgi21482 9 22187978 to 22188603 625 CpG island CpG island 21482
Tssr84081 9 22188137 to 22188149 12 + TSS region transcription start site region 84081
Zfp872 9 22188166 to 22202123 13957 + protein coding gene zinc finger protein 872
Tssr84082 9 22196778 to 22196783 5 + TSS region transcription start site region 84082
Gm18228 9 22204493 to 22205583 1090 + pseudogene predicted gene, 18228
1810064F22Rik 9 22206786 to 22213860 7074 - antisense lncRNA gene RIKEN cDNA 1810064F22 gene
Tssr88478 9 22213850 to 22213866 16 - TSS region transcription start site region 88478
Cpgi21483 9 22225533 to 22226136 603 CpG island CpG island 21483
Tssr84083 9 22225702 to 22225730 28 + TSS region transcription start site region 84083
Zfp809 9 22225714 to 22243354 17640 + protein coding gene zinc finger protein 809
Tssr84084 9 22225733 to 22225760 27 + TSS region transcription start site region 84084
Gm48478 9 22228978 to 22231302 2324 + unclassified gene predicted gene, 48478
Tssr84085 9 22239805 to 22239819 14 + TSS region transcription start site region 84085
Tssr88479 9 22240088 to 22240094 6 - TSS region transcription start site region 88479
Zfp599 9 22247430 to 22259895 12465 - protein coding gene zinc finger protein 599
Cpgi21484 9 22259407 to 22259953 546 CpG island CpG island 21484
Tssr88480 9 22259887 to 22259949 62 - TSS region transcription start site region 88480
Gm39307 9 22260343 to 22263286 2943 + bidirectional promoter lncRNA gene predicted gene, 39307
Gm39308 9 22273068 to 22275070 2002 - lncRNA gene predicted gene, 39308
Zfp810 9 22276748 to 22307648 30900 - protein coding gene zinc finger protein 810
Gm48627 9 22294222 to 22295572 1350 - unclassified gene predicted gene, 48627
Gm18225 9 22295946 to 22296687 741 - pseudogene predicted gene, 18225
Tssr88481 9 22298836 to 22298843 7 - TSS region transcription start site region 88481
Cpgi21485 9 22307162 to 22308062 900 CpG island CpG island 21485
Tssr88482 9 22307641 to 22307694 53 - TSS region transcription start site region 88482
Gm10182 9 22321105 to 22321377 272 - pseudogene predicted pseudogene 10182
Tssr88483 9 22321473 to 22321475 2 - TSS region transcription start site region 88483
Cpgi21486 9 22327643 to 22328231 588 CpG island CpG island 21486
Gm6607 9 22330173 to 22330500 327 - pseudogene predicted gene 6607
Anln 9 22332012 to 22389188 57176 - protein coding gene anillin, actin binding protein
Gm48646 9 22370552 to 22371779 1227 - sense intronic lncRNA gene predicted gene, 48646
Tssr88484 9 22376177 to 22376192 15 - TSS region transcription start site region 88484
Tssr88485 9 22376199 to 22376214 15 - TSS region transcription start site region 88485
Tssr88486 9 22376218 to 22376229 11 - TSS region transcription start site region 88486
Tssr88487 9 22376231 to 22376241 10 - TSS region transcription start site region 88487
Tssr88488 9 22376244 to 22376276 32 - TSS region transcription start site region 88488
Tssr88489 9 22376288 to 22376317 29 - TSS region transcription start site region 88489
Cpgi21487 9 22388420 to 22389589 1169 CpG island CpG island 21487
Tssr84086 9 22388868 to 22388890 22 + TSS region transcription start site region 84086
Tssr84087 9 22388902 to 22388950 48 + TSS region transcription start site region 84087
Tssr88490 9 22389086 to 22389099 13 - TSS region transcription start site region 88490
Tssr88491 9 22389113 to 22389196 83 - TSS region transcription start site region 88491
Tssr84088 9 22389268 to 22389316 48 + TSS region transcription start site region 84088
Tssr88492 9 22390480 to 22390510 30 - TSS region transcription start site region 88492
Gm48652 9 22401586 to 22401828 242 + pseudogene predicted gene, 48652
Tssr84089 9 22409008 to 22409019 11 + TSS region transcription start site region 84089
Cpgi21488 9 22411267 to 22411929 662 CpG island CpG island 21488
9530077C05Rik 9 22411513 to 22444681 33168 + protein coding gene RIKEN cDNA 9530077C05 gene
Tssr84090 9 22411515 to 22411576 61 + TSS region transcription start site region 84090
Tssr84091 9 22411579 to 22411594 15 + TSS region transcription start site region 84091
Tssr84092 9 22421963 to 22421965 2 + TSS region transcription start site region 84092
4930554G03Rik 9 22435897 to 22436448 551 unclassified gene RIKEN cDNA 4930554G03 gene
Tssr88493 9 22445529 to 22445547 18 - TSS region transcription start site region 88493
Tssr88494 9 22445626 to 22445638 12 - TSS region transcription start site region 88494
Rp9 9 22448311 to 22468356 20045 - protein coding gene retinitis pigmentosa 9 (human)
Tssr84093 9 22448706 to 22448778 72 + TSS region transcription start site region 84093
Gm17545 9 22454290 to 22462062 7772 + protein coding gene predicted gene, 17545
Gm3556 9 22466820 to 22467981 1161 protein coding gene predicted gene 3556
Cpgi21489 9 22467371 to 22468650 1279 CpG island CpG island 21489
Tssr88495 9 22468229 to 22468246 17 - TSS region transcription start site region 88495
Tssr88496 9 22468254 to 22468277 23 - TSS region transcription start site region 88496
Tssr88497 9 22468283 to 22468292 9 - TSS region transcription start site region 88497
Tssr88498 9 22468294 to 22468383 89 - TSS region transcription start site region 88498
Cpgi21490 9 22475429 to 22475803 374 CpG island CpG island 21490
Tssr84094 9 22475691 to 22475756 65 + TSS region transcription start site region 84094
Bbs9 9 22475715 to 22888280 412565 + protein coding gene Bardet-Biedl syndrome 9 (human)
Tssr84095 9 22475773 to 22475786 13 + TSS region transcription start site region 84095
Tssr84096 9 22475813 to 22475858 45 + TSS region transcription start site region 84096
Tssr84097 9 22475872 to 22475889 17 + TSS region transcription start site region 84097
Gm2976 9 22479934 to 22480446 512 - pseudogene predicted gene 2976
Tssr88499 9 22486351 to 22486365 14 - TSS region transcription start site region 88499
Tssr84098 9 22643246 to 22643257 11 + TSS region transcription start site region 84098
Tssr84099 9 22643271 to 22643288 17 + TSS region transcription start site region 84099
Tssr84100 9 22655104 to 22655128 24 + TSS region transcription start site region 84100
Tssr84101 9 22655133 to 22655142 9 + TSS region transcription start site region 84101
Tssr84102 9 22655146 to 22655159 13 + TSS region transcription start site region 84102
Tssr84103 9 22655320 to 22655323 3 + TSS region transcription start site region 84103
Gm16165 9 22669737 to 22670516 779 - pseudogene predicted gene 16165
Gm16164 9 22677851 to 22678318 467 - pseudogene predicted gene 16164
Tssr84104 9 22678751 to 22678767 16 + TSS region transcription start site region 84104
Gm27639 9 22772751 to 22772835 84 - snRNA gene predicted gene, 27639
Tssr88500 9 22772821 to 22772848 27 - TSS region transcription start site region 88500
Gm39309 9 22791041 to 22805334 14293 - lncRNA gene predicted gene, 39309
Cpgi21491 9 22948813 to 22948999 186 CpG island CpG island 21491
Gm36685 9 22993549 to 22994557 1008 + lncRNA gene predicted gene, 36685
Gm36743 9 22996434 to 23147606 151172 + lncRNA gene predicted gene, 36743
Cpgi21492 9 23009554 to 23009815 261 CpG island CpG island 21492
Tssr2808 9 23026532 to 23026534 2 - TSS region transcription start site region 2808
Cpgi21493 9 23083694 to 23083890 196 CpG island CpG island 21493
D9Mit126 9 23156393 to 23156518 125 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 126