Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:22005411-22121376

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54 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prkcsh 9 22002988 to 22014245 11257 + protein coding gene protein kinase C substrate 80K-H
Elavl3 9 22015005 to 22052023 37018 - protein coding gene ELAV like RNA binding protein 3
Tssr88436 9 22015256 to 22015284 28 - TSS region transcription start site region 88436
Tssr88437 9 22015290 to 22015304 14 - TSS region transcription start site region 88437
Tssr88438 9 22016407 to 22016419 12 - TSS region transcription start site region 88438
Tssr88439 9 22016432 to 22016451 19 - TSS region transcription start site region 88439
Tssr84067 9 22017601 to 22017620 19 + TSS region transcription start site region 84067
Tssr88440 9 22017700 to 22017734 34 - TSS region transcription start site region 88440
Tssr88441 9 22017882 to 22017897 15 - TSS region transcription start site region 88441
Tssr88442 9 22018264 to 22018268 4 - TSS region transcription start site region 88442
Tssr88443 9 22018674 to 22018685 11 - TSS region transcription start site region 88443
Tssr88444 9 22022286 to 22022327 41 - TSS region transcription start site region 88444
Tssr88445 9 22024420 to 22024423 3 - TSS region transcription start site region 88445
Tssr88446 9 22024734 to 22024766 32 - TSS region transcription start site region 88446
Gm49318 9 22036380 to 22071259 34879 - protein coding gene predicted gene, 49318
Tssr88447 9 22046433 to 22046437 4 - TSS region transcription start site region 88447
Cpgi21472 9 22050113 to 22052364 2251 CpG island CpG island 21472
Tssr88448 9 22051963 to 22051983 20 - TSS region transcription start site region 88448
Tssr88449 9 22052021 to 22052026 5 - TSS region transcription start site region 88449
Cpgi21473 9 22054504 to 22055177 673 CpG island CpG island 21473
Zfp653 9 22055411 to 22071376 15965 - protein coding gene zinc finger protein 653
Cpgi21474 9 22055668 to 22056139 471 CpG island CpG island 21474
Cpgi21475 9 22070536 to 22071597 1061 CpG island CpG island 21475
Gm16845 9 22071002 to 22086122 15120 + antisense lncRNA gene predicted gene, 16845
Tssr84068 9 22071002 to 22071051 49 + TSS region transcription start site region 84068
Tssr88450 9 22071368 to 22071416 48 - TSS region transcription start site region 88450
Ecsit 9 22072246 to 22085438 13192 - protein coding gene ECSIT signalling integrator
Tssr88451 9 22076402 to 22076428 26 - TSS region transcription start site region 88451
Cpgi21476 9 22085013 to 22085763 750 CpG island CpG island 21476
Tssr88452 9 22085056 to 22085085 29 - TSS region transcription start site region 88452
Tssr88453 9 22085380 to 22085389 9 - TSS region transcription start site region 88453
Tssr88454 9 22085391 to 22085443 52 - TSS region transcription start site region 88454
D9Mit294 9 22091559 to 22091674 115 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 294
Gm6581 9 22092513 to 22092772 259 + pseudogene predicted gene 6581
Cpgi21477 9 22095990 to 22096301 311 CpG island CpG island 21477
Cnn1 9 22099221 to 22109221 10000 + protein coding gene calponin 1
Tssr84069 9 22099271 to 22099287 16 + TSS region transcription start site region 84069
Tssr84070 9 22100251 to 22100265 14 + TSS region transcription start site region 84070
Tssr84071 9 22100269 to 22100284 15 + TSS region transcription start site region 84071
Tssr84072 9 22101075 to 22101133 58 + TSS region transcription start site region 84072
Tssr84073 9 22101134 to 22101152 18 + TSS region transcription start site region 84073
Tssr84074 9 22101190 to 22101206 16 + TSS region transcription start site region 84074
Tssr84075 9 22101207 to 22101222 15 + TSS region transcription start site region 84075
Tssr2807 9 22105410 to 22105423 13 + TSS region transcription start site region 2807
Tssr84076 9 22108100 to 22108113 13 + TSS region transcription start site region 84076
Tssr88455 9 22108227 to 22108244 17 - TSS region transcription start site region 88455
Elof1 9 22112989 to 22117172 4183 - protein coding gene ELF1 homolog, elongation factor 1
Tssr88456 9 22113286 to 22113303 17 - TSS region transcription start site region 88456
Mir7084 9 22113944 to 22114013 69 - miRNA gene microRNA 7084
Cpgi21478 9 22116660 to 22117424 764 CpG island CpG island 21478
Tssr88457 9 22117070 to 22117079 9 - TSS region transcription start site region 88457
Tssr88458 9 22117095 to 22117120 25 - TSS region transcription start site region 88458
Tssr88459 9 22117123 to 22117174 51 - TSS region transcription start site region 88459
6530413G14Rik 9 22117328 to 22137756 20428 + unclassified gene RIKEN cDNA 6530413G14 gene