Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:21974086-22804099

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rgl3 9 21971179 to 21989461 18282 - protein coding gene ral guanine nucleotide dissociation stimulator-like 3
Cpgi21466 9 21981205 to 21981721 516 CpG island CpG island 21466
Cpgi21467 9 21987785 to 21988322 537 CpG island CpG island 21467
Cpgi21468 9 21988528 to 21989550 1022 CpG island CpG island 21468
Tssr88431 9 21989407 to 21989424 17 - TSS region transcription start site region 88431
Tssr88432 9 21989427 to 21989456 29 - TSS region transcription start site region 88432
Gm36414 9 21989511 to 21990708 1197 + lncRNA gene predicted gene, 36414
Ccdc151 9 21989871 to 22002634 12763 - protein coding gene coiled-coil domain containing 151
Cpgi21469 9 21989882 to 21990225 343 CpG island CpG island 21469
Cpgi21470 9 21991667 to 21991935 268 CpG island CpG island 21470
Tssr88433 9 21992090 to 21992106 16 - TSS region transcription start site region 88433
Cpgi21471 9 22002326 to 22003558 1232 CpG island CpG island 21471
Tssr88434 9 22002580 to 22002598 18 - TSS region transcription start site region 88434
Tssr88435 9 22002599 to 22002640 41 - TSS region transcription start site region 88435
Tssr84061 9 22002787 to 22002817 30 + TSS region transcription start site region 84061
Prkcsh 9 22002988 to 22014245 11257 + protein coding gene protein kinase C substrate 80K-H
Tssr84062 9 22002992 to 22002999 7 + TSS region transcription start site region 84062
Tssr84063 9 22003002 to 22003028 26 + TSS region transcription start site region 84063
Tssr84064 9 22003035 to 22003037 2 + TSS region transcription start site region 84064
Tssr84065 9 22003041 to 22003046 5 + TSS region transcription start site region 84065
Tssr2806 9 22003307 to 22003334 27 + TSS region transcription start site region 2806
Tssr84066 9 22003410 to 22003461 51 + TSS region transcription start site region 84066
Elavl3 9 22015005 to 22052023 37018 - protein coding gene ELAV like RNA binding protein 3
Tssr88436 9 22015256 to 22015284 28 - TSS region transcription start site region 88436
Tssr88437 9 22015290 to 22015304 14 - TSS region transcription start site region 88437
Tssr88438 9 22016407 to 22016419 12 - TSS region transcription start site region 88438
Tssr88439 9 22016432 to 22016451 19 - TSS region transcription start site region 88439
Tssr84067 9 22017601 to 22017620 19 + TSS region transcription start site region 84067
Tssr88440 9 22017700 to 22017734 34 - TSS region transcription start site region 88440
Tssr88441 9 22017882 to 22017897 15 - TSS region transcription start site region 88441
Tssr88442 9 22018264 to 22018268 4 - TSS region transcription start site region 88442
Tssr88443 9 22018674 to 22018685 11 - TSS region transcription start site region 88443
Tssr88444 9 22022286 to 22022327 41 - TSS region transcription start site region 88444
Tssr88445 9 22024420 to 22024423 3 - TSS region transcription start site region 88445
Tssr88446 9 22024734 to 22024766 32 - TSS region transcription start site region 88446
Gm49318 9 22036380 to 22071259 34879 - protein coding gene predicted gene, 49318
Tssr88447 9 22046433 to 22046437 4 - TSS region transcription start site region 88447
Cpgi21472 9 22050113 to 22052364 2251 CpG island CpG island 21472
Tssr88448 9 22051963 to 22051983 20 - TSS region transcription start site region 88448
Tssr88449 9 22052021 to 22052026 5 - TSS region transcription start site region 88449
Cpgi21473 9 22054504 to 22055177 673 CpG island CpG island 21473
Zfp653 9 22055411 to 22071376 15965 - protein coding gene zinc finger protein 653
Cpgi21474 9 22055668 to 22056139 471 CpG island CpG island 21474
Cpgi21475 9 22070536 to 22071597 1061 CpG island CpG island 21475
Tssr84068 9 22071002 to 22071051 49 + TSS region transcription start site region 84068
Gm16845 9 22071002 to 22086122 15120 + antisense lncRNA gene predicted gene, 16845
Tssr88450 9 22071368 to 22071416 48 - TSS region transcription start site region 88450
Ecsit 9 22072246 to 22085438 13192 - protein coding gene ECSIT signalling integrator
Tssr88451 9 22076402 to 22076428 26 - TSS region transcription start site region 88451
Cpgi21476 9 22085013 to 22085763 750 CpG island CpG island 21476
Tssr88452 9 22085056 to 22085085 29 - TSS region transcription start site region 88452
Tssr88453 9 22085380 to 22085389 9 - TSS region transcription start site region 88453
Tssr88454 9 22085391 to 22085443 52 - TSS region transcription start site region 88454
D9Mit294 9 22091559 to 22091674 115 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 294
Gm6581 9 22092513 to 22092772 259 + pseudogene predicted gene 6581
Cpgi21477 9 22095990 to 22096301 311 CpG island CpG island 21477
Cnn1 9 22099221 to 22109221 10000 + protein coding gene calponin 1
Tssr84069 9 22099271 to 22099287 16 + TSS region transcription start site region 84069
Tssr84070 9 22100251 to 22100265 14 + TSS region transcription start site region 84070
Tssr84071 9 22100269 to 22100284 15 + TSS region transcription start site region 84071
Tssr84072 9 22101075 to 22101133 58 + TSS region transcription start site region 84072
Tssr84073 9 22101134 to 22101152 18 + TSS region transcription start site region 84073
Tssr84074 9 22101190 to 22101206 16 + TSS region transcription start site region 84074
Tssr84075 9 22101207 to 22101222 15 + TSS region transcription start site region 84075
Tssr2807 9 22105410 to 22105423 13 + TSS region transcription start site region 2807
Tssr84076 9 22108100 to 22108113 13 + TSS region transcription start site region 84076
Tssr88455 9 22108227 to 22108244 17 - TSS region transcription start site region 88455
Elof1 9 22112989 to 22117172 4183 - protein coding gene ELF1 homolog, elongation factor 1
Tssr88456 9 22113286 to 22113303 17 - TSS region transcription start site region 88456
Mir7084 9 22113944 to 22114013 69 - miRNA gene microRNA 7084
Cpgi21478 9 22116660 to 22117424 764 CpG island CpG island 21478
Tssr88457 9 22117070 to 22117079 9 - TSS region transcription start site region 88457
Tssr88458 9 22117095 to 22117120 25 - TSS region transcription start site region 88458
Tssr88459 9 22117123 to 22117174 51 - TSS region transcription start site region 88459
6530413G14Rik 9 22117328 to 22137756 20428 + unclassified gene RIKEN cDNA 6530413G14 gene
Acp5 9 22126727 to 22135711 8984 - protein coding gene acid phosphatase 5, tartrate resistant
Tssr88460 9 22129902 to 22129936 34 - TSS region transcription start site region 88460
Tssr88461 9 22130053 to 22130072 19 - TSS region transcription start site region 88461
Tssr88462 9 22130141 to 22130147 6 - TSS region transcription start site region 88462
Tssr88463 9 22130203 to 22130213 10 - TSS region transcription start site region 88463
D9Mit83 9 22130293 to 22130424 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 83
Tssr88464 9 22130567 to 22130581 14 - TSS region transcription start site region 88464
Tssr88465 9 22130611 to 22130640 29 - TSS region transcription start site region 88465
Cpgi21479 9 22131510 to 22132207 697 CpG island CpG island 21479
Tssr88466 9 22131606 to 22131620 14 - TSS region transcription start site region 88466
Tssr88467 9 22131635 to 22131665 30 - TSS region transcription start site region 88467
Tssr88468 9 22131767 to 22131779 12 - TSS region transcription start site region 88468
Tssr88469 9 22131801 to 22131874 73 - TSS region transcription start site region 88469
Tssr88470 9 22131875 to 22131885 10 - TSS region transcription start site region 88470
Tssr88471 9 22132257 to 22132280 23 - TSS region transcription start site region 88471
Tssr88472 9 22132283 to 22132300 17 - TSS region transcription start site region 88472
Tssr88473 9 22132324 to 22132334 10 - TSS region transcription start site region 88473
Tssr88474 9 22135654 to 22135665 11 - TSS region transcription start site region 88474
Tssr88475 9 22135675 to 22135724 49 - TSS region transcription start site region 88475
Tssr88476 9 22135771 to 22135784 13 - TSS region transcription start site region 88476
Gm39306 9 22135834 to 22137757 1923 + lncRNA gene predicted gene, 39306
Tssr84077 9 22136265 to 22136273 8 + TSS region transcription start site region 84077
Cpgi21480 9 22156601 to 22158168 1567 CpG island CpG island 21480
Tssr84078 9 22156838 to 22156881 43 + TSS region transcription start site region 84078
Pigyl 9 22156846 to 22158355 1509 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class Y-like
Tssr84079 9 22156882 to 22156896 14 + TSS region transcription start site region 84079
Tssr84080 9 22156903 to 22156914 11 + TSS region transcription start site region 84080
Cpgi21481 9 22164613 to 22165326 713 CpG island CpG island 21481
Gm18227 9 22169688 to 22170504 816 + pseudogene predicted gene, 18227
Rpl15-ps3 9 22185607 to 22186221 614 - pseudogene ribosomal protein L15, pseudogene 3
Tssr88477 9 22186259 to 22186260 1 - TSS region transcription start site region 88477
Cpgi21482 9 22187978 to 22188603 625 CpG island CpG island 21482
Tssr84081 9 22188137 to 22188149 12 + TSS region transcription start site region 84081
Zfp872 9 22188166 to 22202123 13957 + protein coding gene zinc finger protein 872
Tssr84082 9 22196778 to 22196783 5 + TSS region transcription start site region 84082
Gm18228 9 22204493 to 22205583 1090 + pseudogene predicted gene, 18228
1810064F22Rik 9 22206786 to 22213860 7074 - antisense lncRNA gene RIKEN cDNA 1810064F22 gene
Tssr88478 9 22213850 to 22213866 16 - TSS region transcription start site region 88478
Cpgi21483 9 22225533 to 22226136 603 CpG island CpG island 21483
Tssr84083 9 22225702 to 22225730 28 + TSS region transcription start site region 84083
Zfp809 9 22225714 to 22243354 17640 + protein coding gene zinc finger protein 809
Tssr84084 9 22225733 to 22225760 27 + TSS region transcription start site region 84084
Gm48478 9 22228978 to 22231302 2324 + unclassified gene predicted gene, 48478
Tssr84085 9 22239805 to 22239819 14 + TSS region transcription start site region 84085
Tssr88479 9 22240088 to 22240094 6 - TSS region transcription start site region 88479
Zfp599 9 22247430 to 22259895 12465 - protein coding gene zinc finger protein 599
Cpgi21484 9 22259407 to 22259953 546 CpG island CpG island 21484
Tssr88480 9 22259887 to 22259949 62 - TSS region transcription start site region 88480
Gm39307 9 22260343 to 22263286 2943 + bidirectional promoter lncRNA gene predicted gene, 39307
Gm39308 9 22273068 to 22275070 2002 - lncRNA gene predicted gene, 39308
Zfp810 9 22276748 to 22307648 30900 - protein coding gene zinc finger protein 810
Gm48627 9 22294222 to 22295572 1350 - unclassified gene predicted gene, 48627
Gm18225 9 22295946 to 22296687 741 - pseudogene predicted gene, 18225
Tssr88481 9 22298836 to 22298843 7 - TSS region transcription start site region 88481
Cpgi21485 9 22307162 to 22308062 900 CpG island CpG island 21485
Tssr88482 9 22307641 to 22307694 53 - TSS region transcription start site region 88482
Gm10182 9 22321105 to 22321377 272 - pseudogene predicted pseudogene 10182
Tssr88483 9 22321473 to 22321475 2 - TSS region transcription start site region 88483
Cpgi21486 9 22327643 to 22328231 588 CpG island CpG island 21486
Gm6607 9 22330173 to 22330500 327 - pseudogene predicted gene 6607
Anln 9 22332012 to 22389188 57176 - protein coding gene anillin, actin binding protein
Gm48646 9 22370552 to 22371779 1227 - sense intronic lncRNA gene predicted gene, 48646
Tssr88484 9 22376177 to 22376192 15 - TSS region transcription start site region 88484
Tssr88485 9 22376199 to 22376214 15 - TSS region transcription start site region 88485
Tssr88486 9 22376218 to 22376229 11 - TSS region transcription start site region 88486
Tssr88487 9 22376231 to 22376241 10 - TSS region transcription start site region 88487
Tssr88488 9 22376244 to 22376276 32 - TSS region transcription start site region 88488
Tssr88489 9 22376288 to 22376317 29 - TSS region transcription start site region 88489
Cpgi21487 9 22388420 to 22389589 1169 CpG island CpG island 21487
Tssr84086 9 22388868 to 22388890 22 + TSS region transcription start site region 84086
Tssr84087 9 22388902 to 22388950 48 + TSS region transcription start site region 84087
Tssr88490 9 22389086 to 22389099 13 - TSS region transcription start site region 88490
Tssr88491 9 22389113 to 22389196 83 - TSS region transcription start site region 88491
Tssr84088 9 22389268 to 22389316 48 + TSS region transcription start site region 84088
Tssr88492 9 22390480 to 22390510 30 - TSS region transcription start site region 88492
Gm48652 9 22401586 to 22401828 242 + pseudogene predicted gene, 48652
Tssr84089 9 22409008 to 22409019 11 + TSS region transcription start site region 84089
Cpgi21488 9 22411267 to 22411929 662 CpG island CpG island 21488
9530077C05Rik 9 22411513 to 22444681 33168 + protein coding gene RIKEN cDNA 9530077C05 gene
Tssr84090 9 22411515 to 22411576 61 + TSS region transcription start site region 84090
Tssr84091 9 22411579 to 22411594 15 + TSS region transcription start site region 84091
Tssr84092 9 22421963 to 22421965 2 + TSS region transcription start site region 84092
4930554G03Rik 9 22435897 to 22436448 551 unclassified gene RIKEN cDNA 4930554G03 gene
Tssr88493 9 22445529 to 22445547 18 - TSS region transcription start site region 88493
Tssr88494 9 22445626 to 22445638 12 - TSS region transcription start site region 88494
Rp9 9 22448311 to 22468356 20045 - protein coding gene retinitis pigmentosa 9 (human)
Tssr84093 9 22448706 to 22448778 72 + TSS region transcription start site region 84093
Gm17545 9 22454290 to 22462062 7772 + protein coding gene predicted gene, 17545
Gm3556 9 22466820 to 22467981 1161 protein coding gene predicted gene 3556
Cpgi21489 9 22467371 to 22468650 1279 CpG island CpG island 21489
Tssr88495 9 22468229 to 22468246 17 - TSS region transcription start site region 88495
Tssr88496 9 22468254 to 22468277 23 - TSS region transcription start site region 88496
Tssr88497 9 22468283 to 22468292 9 - TSS region transcription start site region 88497
Tssr88498 9 22468294 to 22468383 89 - TSS region transcription start site region 88498
Cpgi21490 9 22475429 to 22475803 374 CpG island CpG island 21490
Tssr84094 9 22475691 to 22475756 65 + TSS region transcription start site region 84094
Bbs9 9 22475715 to 22888280 412565 + protein coding gene Bardet-Biedl syndrome 9 (human)
Tssr84095 9 22475773 to 22475786 13 + TSS region transcription start site region 84095
Tssr84096 9 22475813 to 22475858 45 + TSS region transcription start site region 84096
Tssr84097 9 22475872 to 22475889 17 + TSS region transcription start site region 84097
Gm2976 9 22479934 to 22480446 512 - pseudogene predicted gene 2976
Tssr88499 9 22486351 to 22486365 14 - TSS region transcription start site region 88499
Tssr84098 9 22643246 to 22643257 11 + TSS region transcription start site region 84098
Tssr84099 9 22643271 to 22643288 17 + TSS region transcription start site region 84099
Tssr84100 9 22655104 to 22655128 24 + TSS region transcription start site region 84100
Tssr84101 9 22655133 to 22655142 9 + TSS region transcription start site region 84101
Tssr84102 9 22655146 to 22655159 13 + TSS region transcription start site region 84102
Tssr84103 9 22655320 to 22655323 3 + TSS region transcription start site region 84103
Gm16165 9 22669737 to 22670516 779 - pseudogene predicted gene 16165
Gm16164 9 22677851 to 22678318 467 - pseudogene predicted gene 16164
Tssr84104 9 22678751 to 22678767 16 + TSS region transcription start site region 84104
Gm27639 9 22772751 to 22772835 84 - snRNA gene predicted gene, 27639
Tssr88500 9 22772821 to 22772848 27 - TSS region transcription start site region 88500
Gm39309 9 22791041 to 22805334 14293 - lncRNA gene predicted gene, 39309