Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:21652589-22183457

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186 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smarca4 9 21616169 to 21704230 88061 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Tssr84040 9 21660577 to 21660594 17 + TSS region transcription start site region 84040
Tssr84041 9 21660610 to 21660620 10 + TSS region transcription start site region 84041
Tssr84042 9 21670100 to 21670140 40 + TSS region transcription start site region 84042
Gm27373 9 21677913 to 21678096 183 + unclassified non-coding RNA gene predicted gene, 27373
Tssr84043 9 21695621 to 21695625 4 + TSS region transcription start site region 84043
Gm26511 9 21717616 to 21723450 5834 - lincRNA gene predicted gene, 26511
Cpgi21450 9 21723139 to 21724441 1302 CpG island CpG island 21450
Ldlr 9 21723576 to 21749919 26343 + protein coding gene low density lipoprotein receptor
Tssr84044 9 21723604 to 21723615 11 + TSS region transcription start site region 84044
Tssr84045 9 21723624 to 21723657 33 + TSS region transcription start site region 84045
Tssr84046 9 21735667 to 21735674 7 + TSS region transcription start site region 84046
Tssr84047 9 21743998 to 21744013 15 + TSS region transcription start site region 84047
Tssr84048 9 21748429 to 21748448 19 + TSS region transcription start site region 84048
Spc24 9 21755442 to 21760303 4861 - protein coding gene SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
Cpgi21451 9 21759792 to 21760706 914 CpG island CpG island 21451
Tssr88407 9 21760275 to 21760294 19 - TSS region transcription start site region 88407
Tssr88408 9 21760298 to 21760316 18 - TSS region transcription start site region 88408
Kank2 9 21766773 to 21798546 31773 - protein coding gene KN motif and ankyrin repeat domains 2
Cpgi21452 9 21769759 to 21770139 380 CpG island CpG island 21452
Tssr88409 9 21769859 to 21769887 28 - TSS region transcription start site region 88409
Tssr88410 9 21770029 to 21770046 17 - TSS region transcription start site region 88410
Tssr88411 9 21770172 to 21770202 30 - TSS region transcription start site region 88411
Cpgi21453 9 21794578 to 21795602 1024 CpG island CpG island 21453
Tssr88412 9 21794992 to 21794997 5 - TSS region transcription start site region 88412
Tssr88413 9 21795011 to 21795022 11 - TSS region transcription start site region 88413
Tssr88414 9 21795061 to 21795075 14 - TSS region transcription start site region 88414
Cpgi21454 9 21797774 to 21799003 1229 CpG island CpG island 21454
Tssr2804 9 21798062 to 21798078 16 + TSS region transcription start site region 2804
Tssr88415 9 21798502 to 21798561 59 - TSS region transcription start site region 88415
Tssr88416 9 21798694 to 21798755 61 - TSS region transcription start site region 88416
Dock6 9 21800180 to 21852716 52536 - protein coding gene dedicator of cytokinesis 6
Tssr88417 9 21804402 to 21804415 13 - TSS region transcription start site region 88417
Gm39305 9 21805608 to 21809575 3967 + lncRNA gene predicted gene, 39305
Tssr88418 9 21809911 to 21809918 7 - TSS region transcription start site region 88418
Tssr88419 9 21809919 to 21809930 11 - TSS region transcription start site region 88419
Mir7083 9 21809941 to 21810000 59 - miRNA gene microRNA 7083
Tssr84049 9 21826549 to 21826554 5 + TSS region transcription start site region 84049
Tssr84050 9 21835489 to 21835504 15 + TSS region transcription start site region 84050
Tssr84051 9 21835506 to 21835516 10 + TSS region transcription start site region 84051
Angptl8 9 21835510 to 21837347 1837 + protein coding gene angiopoietin-like 8
Tssr84052 9 21835635 to 21835646 11 + TSS region transcription start site region 84052
Tssr84053 9 21848226 to 21848237 11 + TSS region transcription start site region 84053
Cpgi21455 9 21852141 to 21853212 1071 CpG island CpG island 21455
Tssr88420 9 21852603 to 21852644 41 - TSS region transcription start site region 88420
Cpgi21456 9 21870934 to 21871091 157 CpG island CpG island 21456
Gm47873 9 21872274 to 21892189 19915 + pseudogene predicted gene, 47873
Rab3d 9 21907491 to 21918183 10692 - protein coding gene RAB3D, member RAS oncogene family
Cpgi21457 9 21917589 to 21918457 868 CpG island CpG island 21457
Tssr88421 9 21918111 to 21918158 47 - TSS region transcription start site region 88421
Tmem205 9 21921009 to 21927535 6526 - protein coding gene transmembrane protein 205
Tssr88422 9 21926360 to 21926386 26 - TSS region transcription start site region 88422
Cpgi21458 9 21927270 to 21927769 499 CpG island CpG island 21458
Tssr88423 9 21927336 to 21927385 49 - TSS region transcription start site region 88423
Ccdc159 9 21927471 to 21935872 8401 + protein coding gene coiled-coil domain containing 159
Tssr88424 9 21927515 to 21927563 48 - TSS region transcription start site region 88424
Tssr88425 9 21927565 to 21927576 11 - TSS region transcription start site region 88425
Tssr84054 9 21927594 to 21927646 52 + TSS region transcription start site region 84054
Tssr84055 9 21927658 to 21927669 11 + TSS region transcription start site region 84055
Tssr84056 9 21927685 to 21927697 12 + TSS region transcription start site region 84056
Cpgi21459 9 21936834 to 21937499 665 CpG island CpG island 21459
Tssr84057 9 21936986 to 21937070 84 + TSS region transcription start site region 84057
Plppr2 9 21937033 to 21948907 11874 + protein coding gene phospholipid phosphatase related 2
Tssr84058 9 21937075 to 21937098 23 + TSS region transcription start site region 84058
Cpgi21460 9 21943283 to 21943958 675 CpG island CpG island 21460
Cpgi21461 9 21944189 to 21944649 460 CpG island CpG island 21461
Cpgi21462 9 21947411 to 21947906 495 CpG island CpG island 21462
Gm45914 9 21955284 to 21956006 722 - lncRNA gene predicted gene, 45914
Cpgi21463 9 21955341 to 21956244 903 CpG island CpG island 21463
Tssr84059 9 21955747 to 21955769 22 + TSS region transcription start site region 84059
Swsap1 9 21955755 to 21958264 2509 + protein coding gene SWIM type zinc finger 7 associated protein 1
Tssr84060 9 21955771 to 21955799 28 + TSS region transcription start site region 84060
Epor 9 21958897 to 21963506 4609 - protein coding gene erythropoietin receptor
Cpgi21464 9 21960441 to 21960910 469 CpG island CpG island 21464
Cpgi21465 9 21961462 to 21962931 1469 CpG island CpG island 21465
Tssr2805 9 21962309 to 21962324 15 - TSS region transcription start site region 2805
Tssr88426 9 21962341 to 21962367 26 - TSS region transcription start site region 88426
Tssr88427 9 21962386 to 21962397 11 - TSS region transcription start site region 88427
Tssr88428 9 21963543 to 21963563 20 - TSS region transcription start site region 88428
Tssr88429 9 21963568 to 21963592 24 - TSS region transcription start site region 88429
Tssr88430 9 21963595 to 21963604 9 - TSS region transcription start site region 88430
D9Mit86 9 21963969 to 21964096 127 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 86
Rgl3 9 21971179 to 21989461 18282 - protein coding gene ral guanine nucleotide dissociation stimulator-like 3
Cpgi21466 9 21981205 to 21981721 516 CpG island CpG island 21466
Cpgi21467 9 21987785 to 21988322 537 CpG island CpG island 21467
Cpgi21468 9 21988528 to 21989550 1022 CpG island CpG island 21468
Tssr88431 9 21989407 to 21989424 17 - TSS region transcription start site region 88431
Tssr88432 9 21989427 to 21989456 29 - TSS region transcription start site region 88432
Gm36414 9 21989511 to 21990708 1197 + lncRNA gene predicted gene, 36414
Ccdc151 9 21989871 to 22002634 12763 - protein coding gene coiled-coil domain containing 151
Cpgi21469 9 21989882 to 21990225 343 CpG island CpG island 21469
Cpgi21470 9 21991667 to 21991935 268 CpG island CpG island 21470
Tssr88433 9 21992090 to 21992106 16 - TSS region transcription start site region 88433
Cpgi21471 9 22002326 to 22003558 1232 CpG island CpG island 21471
Tssr88434 9 22002580 to 22002598 18 - TSS region transcription start site region 88434
Tssr88435 9 22002599 to 22002640 41 - TSS region transcription start site region 88435
Tssr84061 9 22002787 to 22002817 30 + TSS region transcription start site region 84061
Prkcsh 9 22002988 to 22014245 11257 + protein coding gene protein kinase C substrate 80K-H
Tssr84062 9 22002992 to 22002999 7 + TSS region transcription start site region 84062
Tssr84063 9 22003002 to 22003028 26 + TSS region transcription start site region 84063
Tssr84064 9 22003035 to 22003037 2 + TSS region transcription start site region 84064
Tssr84065 9 22003041 to 22003046 5 + TSS region transcription start site region 84065
Tssr2806 9 22003307 to 22003334 27 + TSS region transcription start site region 2806
Tssr84066 9 22003410 to 22003461 51 + TSS region transcription start site region 84066
Elavl3 9 22015005 to 22052023 37018 - protein coding gene ELAV like RNA binding protein 3
Tssr88436 9 22015256 to 22015284 28 - TSS region transcription start site region 88436
Tssr88437 9 22015290 to 22015304 14 - TSS region transcription start site region 88437
Tssr88438 9 22016407 to 22016419 12 - TSS region transcription start site region 88438
Tssr88439 9 22016432 to 22016451 19 - TSS region transcription start site region 88439
Tssr84067 9 22017601 to 22017620 19 + TSS region transcription start site region 84067
Tssr88440 9 22017700 to 22017734 34 - TSS region transcription start site region 88440
Tssr88441 9 22017882 to 22017897 15 - TSS region transcription start site region 88441
Tssr88442 9 22018264 to 22018268 4 - TSS region transcription start site region 88442
Tssr88443 9 22018674 to 22018685 11 - TSS region transcription start site region 88443
Tssr88444 9 22022286 to 22022327 41 - TSS region transcription start site region 88444
Tssr88445 9 22024420 to 22024423 3 - TSS region transcription start site region 88445
Tssr88446 9 22024734 to 22024766 32 - TSS region transcription start site region 88446
Gm49318 9 22036380 to 22071259 34879 - protein coding gene predicted gene, 49318
Tssr88447 9 22046433 to 22046437 4 - TSS region transcription start site region 88447
Cpgi21472 9 22050113 to 22052364 2251 CpG island CpG island 21472
Tssr88448 9 22051963 to 22051983 20 - TSS region transcription start site region 88448
Tssr88449 9 22052021 to 22052026 5 - TSS region transcription start site region 88449
Cpgi21473 9 22054504 to 22055177 673 CpG island CpG island 21473
Zfp653 9 22055411 to 22071376 15965 - protein coding gene zinc finger protein 653
Cpgi21474 9 22055668 to 22056139 471 CpG island CpG island 21474
Cpgi21475 9 22070536 to 22071597 1061 CpG island CpG island 21475
Gm16845 9 22071002 to 22086122 15120 + antisense lncRNA gene predicted gene, 16845
Tssr84068 9 22071002 to 22071051 49 + TSS region transcription start site region 84068
Tssr88450 9 22071368 to 22071416 48 - TSS region transcription start site region 88450
Ecsit 9 22072246 to 22085438 13192 - protein coding gene ECSIT signalling integrator
Tssr88451 9 22076402 to 22076428 26 - TSS region transcription start site region 88451
Cpgi21476 9 22085013 to 22085763 750 CpG island CpG island 21476
Tssr88452 9 22085056 to 22085085 29 - TSS region transcription start site region 88452
Tssr88453 9 22085380 to 22085389 9 - TSS region transcription start site region 88453
Tssr88454 9 22085391 to 22085443 52 - TSS region transcription start site region 88454
D9Mit294 9 22091559 to 22091674 115 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 294
Gm6581 9 22092513 to 22092772 259 + pseudogene predicted gene 6581
Cpgi21477 9 22095990 to 22096301 311 CpG island CpG island 21477
Cnn1 9 22099221 to 22109221 10000 + protein coding gene calponin 1
Tssr84069 9 22099271 to 22099287 16 + TSS region transcription start site region 84069
Tssr84070 9 22100251 to 22100265 14 + TSS region transcription start site region 84070
Tssr84071 9 22100269 to 22100284 15 + TSS region transcription start site region 84071
Tssr84072 9 22101075 to 22101133 58 + TSS region transcription start site region 84072
Tssr84073 9 22101134 to 22101152 18 + TSS region transcription start site region 84073
Tssr84074 9 22101190 to 22101206 16 + TSS region transcription start site region 84074
Tssr84075 9 22101207 to 22101222 15 + TSS region transcription start site region 84075
Tssr2807 9 22105410 to 22105423 13 + TSS region transcription start site region 2807
Tssr84076 9 22108100 to 22108113 13 + TSS region transcription start site region 84076
Tssr88455 9 22108227 to 22108244 17 - TSS region transcription start site region 88455
Elof1 9 22112989 to 22117172 4183 - protein coding gene ELF1 homolog, elongation factor 1
Tssr88456 9 22113286 to 22113303 17 - TSS region transcription start site region 88456
Mir7084 9 22113944 to 22114013 69 - miRNA gene microRNA 7084
Cpgi21478 9 22116660 to 22117424 764 CpG island CpG island 21478
Tssr88457 9 22117070 to 22117079 9 - TSS region transcription start site region 88457
Tssr88458 9 22117095 to 22117120 25 - TSS region transcription start site region 88458
Tssr88459 9 22117123 to 22117174 51 - TSS region transcription start site region 88459
6530413G14Rik 9 22117328 to 22137756 20428 + unclassified gene RIKEN cDNA 6530413G14 gene
Acp5 9 22126727 to 22135711 8984 - protein coding gene acid phosphatase 5, tartrate resistant
Tssr88460 9 22129902 to 22129936 34 - TSS region transcription start site region 88460
Tssr88461 9 22130053 to 22130072 19 - TSS region transcription start site region 88461
Tssr88462 9 22130141 to 22130147 6 - TSS region transcription start site region 88462
Tssr88463 9 22130203 to 22130213 10 - TSS region transcription start site region 88463
D9Mit83 9 22130293 to 22130424 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 83
Tssr88464 9 22130567 to 22130581 14 - TSS region transcription start site region 88464
Tssr88465 9 22130611 to 22130640 29 - TSS region transcription start site region 88465
Cpgi21479 9 22131510 to 22132207 697 CpG island CpG island 21479
Tssr88466 9 22131606 to 22131620 14 - TSS region transcription start site region 88466
Tssr88467 9 22131635 to 22131665 30 - TSS region transcription start site region 88467
Tssr88468 9 22131767 to 22131779 12 - TSS region transcription start site region 88468
Tssr88469 9 22131801 to 22131874 73 - TSS region transcription start site region 88469
Tssr88470 9 22131875 to 22131885 10 - TSS region transcription start site region 88470
Tssr88471 9 22132257 to 22132280 23 - TSS region transcription start site region 88471
Tssr88472 9 22132283 to 22132300 17 - TSS region transcription start site region 88472
Tssr88473 9 22132324 to 22132334 10 - TSS region transcription start site region 88473
Tssr88474 9 22135654 to 22135665 11 - TSS region transcription start site region 88474
Tssr88475 9 22135675 to 22135724 49 - TSS region transcription start site region 88475
Tssr88476 9 22135771 to 22135784 13 - TSS region transcription start site region 88476
Gm39306 9 22135834 to 22137757 1923 + lncRNA gene predicted gene, 39306
Tssr84077 9 22136265 to 22136273 8 + TSS region transcription start site region 84077
Cpgi21480 9 22156601 to 22158168 1567 CpG island CpG island 21480
Tssr84078 9 22156838 to 22156881 43 + TSS region transcription start site region 84078
Pigyl 9 22156846 to 22158355 1509 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class Y-like
Tssr84079 9 22156882 to 22156896 14 + TSS region transcription start site region 84079
Tssr84080 9 22156903 to 22156914 11 + TSS region transcription start site region 84080
Cpgi21481 9 22164613 to 22165326 713 CpG island CpG island 21481
Gm18227 9 22169688 to 22170504 816 + pseudogene predicted gene, 18227