Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:21324642-21525684

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc44a2 9 21320719 to 21355028 34309 + protein coding gene solute carrier family 44, member 2
Tssr83984 9 21330194 to 21330220 26 + TSS region transcription start site region 83984
Tssr83985 9 21330357 to 21330365 8 + TSS region transcription start site region 83985
Tssr83986 9 21337832 to 21337859 27 + TSS region transcription start site region 83986
Cpgi21441 9 21337869 to 21338095 226 CpG island CpG island 21441
Tssr83987 9 21337870 to 21337877 7 + TSS region transcription start site region 83987
Tssr83988 9 21351965 to 21351969 4 + TSS region transcription start site region 83988
Tssr88396 9 21359424 to 21359426 2 - TSS region transcription start site region 88396
Cpgi21442 9 21367175 to 21368577 1402 CpG island CpG island 21442
Tssr88397 9 21367393 to 21367402 9 - TSS region transcription start site region 88397
Gm36198 9 21367396 to 21369184 1788 - antisense lncRNA gene predicted gene, 36198
Tssr88398 9 21367423 to 21367442 19 - TSS region transcription start site region 88398
Tssr88399 9 21367452 to 21367472 20 - TSS region transcription start site region 88399
Tssr83989 9 21367865 to 21367881 16 + TSS region transcription start site region 83989
Ilf3 9 21367871 to 21405361 37490 + protein coding gene interleukin enhancer binding factor 3
Tssr83990 9 21367890 to 21367970 80 + TSS region transcription start site region 83990
Tssr83991 9 21368014 to 21368027 13 + TSS region transcription start site region 83991
Tssr83992 9 21368047 to 21368061 14 + TSS region transcription start site region 83992
Tssr83993 9 21368495 to 21368505 10 + TSS region transcription start site region 83993
Tssr83994 9 21368507 to 21368524 17 + TSS region transcription start site region 83994
Tssr83995 9 21378106 to 21378115 9 + TSS region transcription start site region 83995
Tssr83996 9 21380610 to 21380613 3 + TSS region transcription start site region 83996
8030498B09Rik 9 21390099 to 21391254 1155 unclassified gene RIKEN cDNA 8030498B09 gene
Gm16853 9 21405242 to 21411720 6478 - antisense lncRNA gene predicted gene, 16853
Cpgi21443 9 21411593 to 21412609 1016 CpG island CpG island 21443
Tssr83997 9 21411824 to 21411853 29 + TSS region transcription start site region 83997
Qtrt1 9 21411837 to 21420274 8437 + protein coding gene queuine tRNA-ribosyltransferase catalytic subunit 1
Tssr88400 9 21412241 to 21412246 5 - TSS region transcription start site region 88400
Cpgi21444 9 21424642 to 21425684 1042 CpG island CpG island 21444
Tssr83998 9 21424901 to 21424981 80 + TSS region transcription start site region 83998
Dnm2 9 21424908 to 21507759 82851 + protein coding gene dynamin 2
Tssr83999 9 21424984 to 21425021 37 + TSS region transcription start site region 83999
Gm46104 9 21465740 to 21467197 1457 + lncRNA gene predicted gene, 46104
Tssr84000 9 21469928 to 21469929 1 + TSS region transcription start site region 84000
Tssr84001 9 21484562 to 21484566 4 + TSS region transcription start site region 84001
Tssr84002 9 21490363 to 21490374 11 + TSS region transcription start site region 84002
Tssr84003 9 21490518 to 21490529 11 + TSS region transcription start site region 84003
Tssr84004 9 21491363 to 21491376 13 + TSS region transcription start site region 84004
Mir199a-1 9 21496495 to 21496564 69 - miRNA gene microRNA 199a-1
Tssr84005 9 21499399 to 21499414 15 + TSS region transcription start site region 84005
Tssr84006 9 21499498 to 21499514 16 + TSS region transcription start site region 84006
Tssr84007 9 21505028 to 21505039 11 + TSS region transcription start site region 84007
Tmed1 9 21507553 to 21510252 2699 - protein coding gene transmembrane p24 trafficking protein 1
Cpgi21445 9 21509855 to 21510709 854 CpG island CpG island 21445
Tssr88401 9 21510181 to 21510203 22 - TSS region transcription start site region 88401
Tssr84008 9 21510592 to 21510626 34 + TSS region transcription start site region 84008