Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:21240194-21420220

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
S1pr5 9 21242917 to 21248443 5526 - protein coding gene sphingosine-1-phosphate receptor 5
Tssr83981 9 21243387 to 21243388 1 + TSS region transcription start site region 83981
Cpgi21434 9 21243847 to 21245510 1663 CpG island CpG island 21434
Gm48303 9 21247713 to 21249606 1893 + unclassified gene predicted gene, 48303
Cpgi21435 9 21248298 to 21248638 340 CpG island CpG island 21435
Tssr88388 9 21248410 to 21248422 12 - TSS region transcription start site region 88388
Tssr88389 9 21248437 to 21248450 13 - TSS region transcription start site region 88389
Cpgi21436 9 21264765 to 21265878 1113 CpG island CpG island 21436
Atg4d 9 21265257 to 21274837 9580 + protein coding gene autophagy related 4D, cysteine peptidase
Tssr83982 9 21265287 to 21265322 35 + TSS region transcription start site region 83982
Kri1 9 21273457 to 21287969 14512 - protein coding gene KRI1 homolog
Tssr2792 9 21287694 to 21287720 26 + TSS region transcription start site region 2792
Tssr2793 9 21287921 to 21287926 5 - TSS region transcription start site region 2793
Tssr88390 9 21287954 to 21287976 22 - TSS region transcription start site region 88390
Tssr2794 9 21288039 to 21288069 30 + TSS region transcription start site region 2794
Tssr2795 9 21288279 to 21288298 19 + TSS region transcription start site region 2795
Cdkn2d 9 21288459 to 21291402 2943 - protein coding gene cyclin dependent kinase inhibitor 2D
Tssr2796 9 21288722 to 21288728 6 + TSS region transcription start site region 2796
Tssr2797 9 21290476 to 21290481 5 - TSS region transcription start site region 2797
Tssr2798 9 21291033 to 21291055 22 - TSS region transcription start site region 2798
Tssr88391 9 21291124 to 21291162 38 - TSS region transcription start site region 88391
Tssr2799 9 21291249 to 21291263 14 - TSS region transcription start site region 2799
Tssr2800 9 21291356 to 21291363 7 - TSS region transcription start site region 2800
Tssr2801 9 21291397 to 21291408 11 - TSS region transcription start site region 2801
Tssr2802 9 21291413 to 21291431 18 - TSS region transcription start site region 2802
Tssr2803 9 21291744 to 21291761 17 + TSS region transcription start site region 2803
Ap1m2 9 21294615 to 21312349 17734 - protein coding gene adaptor protein complex AP-1, mu 2 subunit
Cpgi21437 9 21309425 to 21309786 361 CpG island CpG island 21437
Cpgi21438 9 21312031 to 21312623 592 CpG island CpG island 21438
Tssr88392 9 21312255 to 21312332 77 - TSS region transcription start site region 88392
Tssr88393 9 21312336 to 21312345 9 - TSS region transcription start site region 88393
Cpgi21439 9 21313340 to 21313534 194 CpG island CpG island 21439
Gm39302 9 21318313 to 21320678 2365 - lincRNA gene predicted gene, 39302
Tssr88394 9 21320606 to 21320636 30 - TSS region transcription start site region 88394
Cpgi21440 9 21320611 to 21321363 752 CpG island CpG island 21440
Slc44a2 9 21320719 to 21355028 34309 + protein coding gene solute carrier family 44, member 2
Tssr83983 9 21320720 to 21320807 87 + TSS region transcription start site region 83983
Tssr88395 9 21321670 to 21321677 7 - TSS region transcription start site region 88395
Tssr83984 9 21330194 to 21330220 26 + TSS region transcription start site region 83984
Tssr83985 9 21330357 to 21330365 8 + TSS region transcription start site region 83985
Tssr83986 9 21337832 to 21337859 27 + TSS region transcription start site region 83986
Cpgi21441 9 21337869 to 21338095 226 CpG island CpG island 21441
Tssr83987 9 21337870 to 21337877 7 + TSS region transcription start site region 83987
Tssr83988 9 21351965 to 21351969 4 + TSS region transcription start site region 83988
Tssr88396 9 21359424 to 21359426 2 - TSS region transcription start site region 88396
Cpgi21442 9 21367175 to 21368577 1402 CpG island CpG island 21442
Tssr88397 9 21367393 to 21367402 9 - TSS region transcription start site region 88397
Gm36198 9 21367396 to 21369184 1788 - antisense lncRNA gene predicted gene, 36198
Tssr88398 9 21367423 to 21367442 19 - TSS region transcription start site region 88398
Tssr88399 9 21367452 to 21367472 20 - TSS region transcription start site region 88399
Tssr83989 9 21367865 to 21367881 16 + TSS region transcription start site region 83989
Ilf3 9 21367871 to 21405361 37490 + protein coding gene interleukin enhancer binding factor 3
Tssr83990 9 21367890 to 21367970 80 + TSS region transcription start site region 83990
Tssr83991 9 21368014 to 21368027 13 + TSS region transcription start site region 83991
Tssr83992 9 21368047 to 21368061 14 + TSS region transcription start site region 83992
Tssr83993 9 21368495 to 21368505 10 + TSS region transcription start site region 83993
Tssr83994 9 21368507 to 21368524 17 + TSS region transcription start site region 83994
Tssr83995 9 21378106 to 21378115 9 + TSS region transcription start site region 83995
Tssr83996 9 21380610 to 21380613 3 + TSS region transcription start site region 83996
8030498B09Rik 9 21390099 to 21391254 1155 unclassified gene RIKEN cDNA 8030498B09 gene
Gm16853 9 21405242 to 21411720 6478 - antisense lncRNA gene predicted gene, 16853
Cpgi21443 9 21411593 to 21412609 1016 CpG island CpG island 21443
Tssr83997 9 21411824 to 21411853 29 + TSS region transcription start site region 83997
Qtrt1 9 21411837 to 21420274 8437 + protein coding gene queuine tRNA-ribosyltransferase catalytic subunit 1
Tssr88400 9 21412241 to 21412246 5 - TSS region transcription start site region 88400