Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:21131606-23131620

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461 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21420 9 21130964 to 21131610 646 CpG island CpG island 21420
Tssr83967 9 21136749 to 21136769 20 + TSS region transcription start site region 83967
Cdc37 9 21138541 to 21149977 11436 - protein coding gene cell division cycle 37
Tssr88372 9 21142050 to 21142068 18 - TSS region transcription start site region 88372
Tssr88373 9 21149564 to 21149568 4 - TSS region transcription start site region 88373
Cpgi21421 9 21149629 to 21150336 707 CpG island CpG island 21421
Tssr88374 9 21149873 to 21149887 14 - TSS region transcription start site region 88374
Tssr88375 9 21149894 to 21149978 84 - TSS region transcription start site region 88375
Gm35977 9 21149985 to 21157492 7507 + lncRNA gene predicted gene, 35977
Gm39301 9 21155383 to 21156010 627 + lncRNA gene predicted gene, 39301
D9Mit323 9 21156610 to 21156758 148 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 323
Gm36118 9 21160341 to 21165668 5327 - lncRNA gene predicted gene, 36118
Cpgi21422 9 21161156 to 21161879 723 CpG island CpG island 21422
Cpgi21423 9 21163955 to 21164570 615 CpG island CpG island 21423
Cpgi21424 9 21164656 to 21166822 2166 CpG island CpG island 21424
Pde4a 9 21165714 to 21213248 47534 + protein coding gene phosphodiesterase 4A, cAMP specific
Tssr83968 9 21165720 to 21165762 42 + TSS region transcription start site region 83968
Tssr88376 9 21166855 to 21166895 40 - TSS region transcription start site region 88376
Tssr83969 9 21167944 to 21167964 20 + TSS region transcription start site region 83969
Tssr88377 9 21168320 to 21168378 58 - TSS region transcription start site region 88377
Cpgi21425 9 21181367 to 21182025 658 CpG island CpG island 21425
Tssr83970 9 21181571 to 21181624 53 + TSS region transcription start site region 83970
Cpgi21426 9 21183986 to 21184510 524 CpG island CpG island 21426
Tssr83971 9 21184113 to 21184130 17 + TSS region transcription start site region 83971
Tssr83972 9 21184172 to 21184186 14 + TSS region transcription start site region 83972
Tssr83973 9 21184348 to 21184384 36 + TSS region transcription start site region 83973
Tssr83974 9 21196722 to 21196771 49 + TSS region transcription start site region 83974
Tssr83975 9 21200705 to 21200761 56 + TSS region transcription start site region 83975
Cpgi21427 9 21204891 to 21205158 267 CpG island CpG island 21427
Tssr83976 9 21220754 to 21220772 18 + TSS region transcription start site region 83976
Tssr88378 9 21224951 to 21224954 3 - TSS region transcription start site region 88378
Cpgi21428 9 21225267 to 21225470 203 CpG island CpG island 21428
Tssr83977 9 21225363 to 21225388 25 + TSS region transcription start site region 83977
Gm16754 9 21225371 to 21233046 7675 + antisense lncRNA gene predicted gene, 16754
Tssr83978 9 21225396 to 21225431 35 + TSS region transcription start site region 83978
Cpgi21429 9 21227481 to 21227651 170 CpG island CpG island 21429
Keap1 9 21229730 to 21239332 9602 - protein coding gene kelch-like ECH-associated protein 1
Cpgi21430 9 21231445 to 21231999 554 CpG island CpG island 21430
Cpgi21431 9 21233278 to 21234174 896 CpG island CpG island 21431
Tssr83979 9 21233509 to 21233520 11 + TSS region transcription start site region 83979
Tssr83980 9 21235597 to 21235615 18 + TSS region transcription start site region 83980
Cpgi21432 9 21237010 to 21237710 700 CpG island CpG island 21432
Tssr88379 9 21237153 to 21237165 12 - TSS region transcription start site region 88379
Tssr88380 9 21237174 to 21237208 34 - TSS region transcription start site region 88380
Tssr88381 9 21237215 to 21237230 15 - TSS region transcription start site region 88381
Cpgi21433 9 21238369 to 21239753 1384 CpG island CpG island 21433
Tssr88382 9 21238805 to 21238826 21 - TSS region transcription start site region 88382
Tssr88383 9 21238834 to 21238849 15 - TSS region transcription start site region 88383
Tssr88384 9 21238930 to 21238991 61 - TSS region transcription start site region 88384
Tssr88385 9 21239053 to 21239088 35 - TSS region transcription start site region 88385
Tssr88386 9 21239228 to 21239308 80 - TSS region transcription start site region 88386
Tssr88387 9 21239310 to 21239339 29 - TSS region transcription start site region 88387
S1pr5 9 21242917 to 21248443 5526 - protein coding gene sphingosine-1-phosphate receptor 5
Tssr83981 9 21243387 to 21243388 1 + TSS region transcription start site region 83981
Cpgi21434 9 21243847 to 21245510 1663 CpG island CpG island 21434
Gm48303 9 21247713 to 21249606 1893 + unclassified gene predicted gene, 48303
Cpgi21435 9 21248298 to 21248638 340 CpG island CpG island 21435
Tssr88388 9 21248410 to 21248422 12 - TSS region transcription start site region 88388
Tssr88389 9 21248437 to 21248450 13 - TSS region transcription start site region 88389
Cpgi21436 9 21264765 to 21265878 1113 CpG island CpG island 21436
Atg4d 9 21265257 to 21274837 9580 + protein coding gene autophagy related 4D, cysteine peptidase
Tssr83982 9 21265287 to 21265322 35 + TSS region transcription start site region 83982
Kri1 9 21273457 to 21287969 14512 - protein coding gene KRI1 homolog
Tssr2792 9 21287694 to 21287720 26 + TSS region transcription start site region 2792
Tssr2793 9 21287921 to 21287926 5 - TSS region transcription start site region 2793
Tssr88390 9 21287954 to 21287976 22 - TSS region transcription start site region 88390
Tssr2794 9 21288039 to 21288069 30 + TSS region transcription start site region 2794
Tssr2795 9 21288279 to 21288298 19 + TSS region transcription start site region 2795
Cdkn2d 9 21288459 to 21291402 2943 - protein coding gene cyclin dependent kinase inhibitor 2D
Tssr2796 9 21288722 to 21288728 6 + TSS region transcription start site region 2796
Tssr2797 9 21290476 to 21290481 5 - TSS region transcription start site region 2797
Tssr2798 9 21291033 to 21291055 22 - TSS region transcription start site region 2798
Tssr88391 9 21291124 to 21291162 38 - TSS region transcription start site region 88391
Tssr2799 9 21291249 to 21291263 14 - TSS region transcription start site region 2799
Tssr2800 9 21291356 to 21291363 7 - TSS region transcription start site region 2800
Tssr2801 9 21291397 to 21291408 11 - TSS region transcription start site region 2801
Tssr2802 9 21291413 to 21291431 18 - TSS region transcription start site region 2802
Tssr2803 9 21291744 to 21291761 17 + TSS region transcription start site region 2803
Ap1m2 9 21294615 to 21312349 17734 - protein coding gene adaptor protein complex AP-1, mu 2 subunit
Cpgi21437 9 21309425 to 21309786 361 CpG island CpG island 21437
Cpgi21438 9 21312031 to 21312623 592 CpG island CpG island 21438
Tssr88392 9 21312255 to 21312332 77 - TSS region transcription start site region 88392
Tssr88393 9 21312336 to 21312345 9 - TSS region transcription start site region 88393
Cpgi21439 9 21313340 to 21313534 194 CpG island CpG island 21439
Gm39302 9 21318313 to 21320678 2365 - lincRNA gene predicted gene, 39302
Tssr88394 9 21320606 to 21320636 30 - TSS region transcription start site region 88394
Cpgi21440 9 21320611 to 21321363 752 CpG island CpG island 21440
Slc44a2 9 21320719 to 21355028 34309 + protein coding gene solute carrier family 44, member 2
Tssr83983 9 21320720 to 21320807 87 + TSS region transcription start site region 83983
Tssr88395 9 21321670 to 21321677 7 - TSS region transcription start site region 88395
Tssr83984 9 21330194 to 21330220 26 + TSS region transcription start site region 83984
Tssr83985 9 21330357 to 21330365 8 + TSS region transcription start site region 83985
Tssr83986 9 21337832 to 21337859 27 + TSS region transcription start site region 83986
Cpgi21441 9 21337869 to 21338095 226 CpG island CpG island 21441
Tssr83987 9 21337870 to 21337877 7 + TSS region transcription start site region 83987
Tssr83988 9 21351965 to 21351969 4 + TSS region transcription start site region 83988
Tssr88396 9 21359424 to 21359426 2 - TSS region transcription start site region 88396
Cpgi21442 9 21367175 to 21368577 1402 CpG island CpG island 21442
Tssr88397 9 21367393 to 21367402 9 - TSS region transcription start site region 88397
Gm36198 9 21367396 to 21369184 1788 - antisense lncRNA gene predicted gene, 36198
Tssr88398 9 21367423 to 21367442 19 - TSS region transcription start site region 88398
Tssr88399 9 21367452 to 21367472 20 - TSS region transcription start site region 88399
Tssr83989 9 21367865 to 21367881 16 + TSS region transcription start site region 83989
Ilf3 9 21367871 to 21405361 37490 + protein coding gene interleukin enhancer binding factor 3
Tssr83990 9 21367890 to 21367970 80 + TSS region transcription start site region 83990
Tssr83991 9 21368014 to 21368027 13 + TSS region transcription start site region 83991
Tssr83992 9 21368047 to 21368061 14 + TSS region transcription start site region 83992
Tssr83993 9 21368495 to 21368505 10 + TSS region transcription start site region 83993
Tssr83994 9 21368507 to 21368524 17 + TSS region transcription start site region 83994
Tssr83995 9 21378106 to 21378115 9 + TSS region transcription start site region 83995
Tssr83996 9 21380610 to 21380613 3 + TSS region transcription start site region 83996
8030498B09Rik 9 21390099 to 21391254 1155 unclassified gene RIKEN cDNA 8030498B09 gene
Gm16853 9 21405242 to 21411720 6478 - antisense lncRNA gene predicted gene, 16853
Cpgi21443 9 21411593 to 21412609 1016 CpG island CpG island 21443
Tssr83997 9 21411824 to 21411853 29 + TSS region transcription start site region 83997
Qtrt1 9 21411837 to 21420274 8437 + protein coding gene queuine tRNA-ribosyltransferase catalytic subunit 1
Tssr88400 9 21412241 to 21412246 5 - TSS region transcription start site region 88400
Cpgi21444 9 21424642 to 21425684 1042 CpG island CpG island 21444
Tssr83998 9 21424901 to 21424981 80 + TSS region transcription start site region 83998
Dnm2 9 21424908 to 21507759 82851 + protein coding gene dynamin 2
Tssr83999 9 21424984 to 21425021 37 + TSS region transcription start site region 83999
Gm46104 9 21465740 to 21467197 1457 + lncRNA gene predicted gene, 46104
Tssr84000 9 21469928 to 21469929 1 + TSS region transcription start site region 84000
Tssr84001 9 21484562 to 21484566 4 + TSS region transcription start site region 84001
Tssr84002 9 21490363 to 21490374 11 + TSS region transcription start site region 84002
Tssr84003 9 21490518 to 21490529 11 + TSS region transcription start site region 84003
Tssr84004 9 21491363 to 21491376 13 + TSS region transcription start site region 84004
Mir199a-1 9 21496495 to 21496564 69 - miRNA gene microRNA 199a-1
Tssr84005 9 21499399 to 21499414 15 + TSS region transcription start site region 84005
Tssr84006 9 21499498 to 21499514 16 + TSS region transcription start site region 84006
Tssr84007 9 21505028 to 21505039 11 + TSS region transcription start site region 84007
Tmed1 9 21507553 to 21510252 2699 - protein coding gene transmembrane p24 trafficking protein 1
Cpgi21445 9 21509855 to 21510709 854 CpG island CpG island 21445
Tssr88401 9 21510181 to 21510203 22 - TSS region transcription start site region 88401
Tssr84008 9 21510592 to 21510626 34 + TSS region transcription start site region 84008
Tssr84009 9 21526144 to 21526207 63 + TSS region transcription start site region 84009
AB124611 9 21526176 to 21545333 19157 + protein coding gene cDNA sequence AB124611
Tssr84010 9 21526222 to 21526233 11 + TSS region transcription start site region 84010
Gm20519 9 21533627 to 21533985 358 - pseudogene predicted gene 20519
Tssr84011 9 21537225 to 21537233 8 + TSS region transcription start site region 84011
Tssr84012 9 21545078 to 21545100 22 + TSS region transcription start site region 84012
Tssr84013 9 21545113 to 21545136 23 + TSS region transcription start site region 84013
Cpgi21446 9 21545851 to 21547811 1960 CpG island CpG island 21446
Tssr84014 9 21546759 to 21546832 73 + TSS region transcription start site region 84014
Tssr84015 9 21546842 to 21546936 94 + TSS region transcription start site region 84015
Carm1 9 21546894 to 21589467 42573 + protein coding gene coactivator-associated arginine methyltransferase 1
Tssr84016 9 21568287 to 21568291 4 + TSS region transcription start site region 84016
Tssr84017 9 21587295 to 21587327 32 + TSS region transcription start site region 84017
Tssr84018 9 21588180 to 21588202 22 + TSS region transcription start site region 84018
Tssr84019 9 21588491 to 21588516 25 + TSS region transcription start site region 84019
Tssr84020 9 21588582 to 21588605 23 + TSS region transcription start site region 84020
Yipf2 9 21588682 to 21592828 4146 - protein coding gene Yip1 domain family, member 2
Tssr84021 9 21588895 to 21588910 15 + TSS region transcription start site region 84021
Tssr84022 9 21589203 to 21589221 18 + TSS region transcription start site region 84022
Tssr84023 9 21589228 to 21589244 16 + TSS region transcription start site region 84023
Cpgi21447 9 21592511 to 21593849 1338 CpG island CpG island 21447
Timm29 9 21592722 to 21595970 3248 + protein coding gene translocase of inner mitochondrial membrane 29
Tssr88402 9 21592733 to 21592795 62 - TSS region transcription start site region 88402
Tssr88403 9 21592805 to 21592846 41 - TSS region transcription start site region 88403
Tssr84024 9 21592885 to 21592898 13 + TSS region transcription start site region 84024
Tssr84025 9 21592905 to 21592963 58 + TSS region transcription start site region 84025
Gm7904 9 21607863 to 21608327 464 - pseudogene predicted gene 7904
D9Ertd12e 9 21608718 to 21608939 221 DNA segment DNA segment, Chr 9, ERATO Doi 12, expressed
Gm39304 9 21612366 to 21616094 3728 - lncRNA gene predicted gene, 39304
Mir1946b 9 21613444 to 21613576 132 - miRNA gene microRNA 1946b
Cpgi21448 9 21615644 to 21616890 1246 CpG island CpG island 21448
Tssr88404 9 21615862 to 21615879 17 - TSS region transcription start site region 88404
Tssr84026 9 21616128 to 21616147 19 + TSS region transcription start site region 84026
Tssr84027 9 21616152 to 21616163 11 + TSS region transcription start site region 84027
Tssr84028 9 21616166 to 21616177 11 + TSS region transcription start site region 84028
Smarca4 9 21616169 to 21704230 88061 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Tssr84029 9 21616230 to 21616281 51 + TSS region transcription start site region 84029
Tssr84030 9 21616300 to 21616311 11 + TSS region transcription start site region 84030
Tssr84031 9 21616368 to 21616371 3 + TSS region transcription start site region 84031
Tssr88405 9 21616451 to 21616471 20 - TSS region transcription start site region 88405
Tssr84032 9 21625656 to 21625662 6 + TSS region transcription start site region 84032
Tssr84033 9 21625944 to 21625959 15 + TSS region transcription start site region 84033
Tssr84034 9 21625983 to 21625994 11 + TSS region transcription start site region 84034
Tssr84035 9 21627377 to 21627381 4 + TSS region transcription start site region 84035
Tssr84036 9 21632791 to 21632798 7 + TSS region transcription start site region 84036
Tssr84037 9 21632990 to 21633021 31 + TSS region transcription start site region 84037
Tssr88406 9 21635833 to 21635870 37 - TSS region transcription start site region 88406
Tssr84038 9 21637272 to 21637310 38 + TSS region transcription start site region 84038
Cpgi21449 9 21639247 to 21639398 151 CpG island CpG island 21449
Tssr84039 9 21640945 to 21640961 16 + TSS region transcription start site region 84039
Tssr84040 9 21660577 to 21660594 17 + TSS region transcription start site region 84040
Tssr84041 9 21660610 to 21660620 10 + TSS region transcription start site region 84041
Tssr84042 9 21670100 to 21670140 40 + TSS region transcription start site region 84042
Gm27373 9 21677913 to 21678096 183 + unclassified non-coding RNA gene predicted gene, 27373
Tssr84043 9 21695621 to 21695625 4 + TSS region transcription start site region 84043
Gm26511 9 21717616 to 21723450 5834 - lincRNA gene predicted gene, 26511
Cpgi21450 9 21723139 to 21724441 1302 CpG island CpG island 21450
Ldlr 9 21723576 to 21749919 26343 + protein coding gene low density lipoprotein receptor
Tssr84044 9 21723604 to 21723615 11 + TSS region transcription start site region 84044
Tssr84045 9 21723624 to 21723657 33 + TSS region transcription start site region 84045
Tssr84046 9 21735667 to 21735674 7 + TSS region transcription start site region 84046
Tssr84047 9 21743998 to 21744013 15 + TSS region transcription start site region 84047
Tssr84048 9 21748429 to 21748448 19 + TSS region transcription start site region 84048
Spc24 9 21755442 to 21760303 4861 - protein coding gene SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
Cpgi21451 9 21759792 to 21760706 914 CpG island CpG island 21451