Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:21032944-21302964

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Icam5 9 21032073 to 21039036 6963 + protein coding gene intercellular adhesion molecule 5, telencephalin
Cpgi21413 9 21032860 to 21033823 963 CpG island CpG island 21413
Tssr88354 9 21033322 to 21033337 15 - TSS region transcription start site region 88354
Gm26592 9 21034485 to 21037782 3297 - antisense lncRNA gene predicted gene, 26592
Cpgi21414 9 21035134 to 21035705 571 CpG island CpG island 21414
Cpgi21415 9 21036166 to 21038056 1890 CpG island CpG island 21415
Tssr88355 9 21037775 to 21037795 20 - TSS region transcription start site region 88355
D9Mit160 9 21038175 to 21038312 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 160
Cpgi21416 9 21038559 to 21038959 400 CpG island CpG island 21416
Zglp1 9 21062393 to 21067093 4700 - protein coding gene zinc finger, GATA-like protein 1
Gm49373 9 21062400 to 21073096 10696 - protein coding gene predicted gene, 49373
Cpgi21417 9 21066810 to 21067251 441 CpG island CpG island 21417
Gm38431 9 21067514 to 21091997 24483 - lncRNA gene predicted gene, 38431
Fdx2 9 21067520 to 21073514 5994 - protein coding gene ferredoxin 2
Cpgi21418 9 21072909 to 21073749 840 CpG island CpG island 21418
Tssr88356 9 21073215 to 21073239 24 - TSS region transcription start site region 88356
Tssr88357 9 21073494 to 21073541 47 - TSS region transcription start site region 88357
Raver1 9 21074158 to 21091988 17830 - protein coding gene ribonucleoprotein, PTB-binding 1
Tssr88358 9 21074877 to 21074921 44 - TSS region transcription start site region 88358
Tssr88359 9 21075241 to 21075264 23 - TSS region transcription start site region 88359
Tssr88360 9 21075280 to 21075303 23 - TSS region transcription start site region 88360
Mir7082 9 21075497 to 21075588 91 - miRNA gene microRNA 7082
Tssr88361 9 21077186 to 21077189 3 - TSS region transcription start site region 88361
Tssr88362 9 21078478 to 21078510 32 - TSS region transcription start site region 88362
Tssr88363 9 21078634 to 21078658 24 - TSS region transcription start site region 88363
Tssr88364 9 21079464 to 21079503 39 - TSS region transcription start site region 88364
Tssr83964 9 21079731 to 21079735 4 + TSS region transcription start site region 83964
Tssr88365 9 21079798 to 21079809 11 - TSS region transcription start site region 88365
Cpgi21419 9 21091407 to 21092272 865 CpG island CpG island 21419
Tssr83965 9 21091728 to 21091767 39 + TSS region transcription start site region 83965
1700084C06Rik 9 21091755 to 21128393 36638 + antisense lncRNA gene RIKEN cDNA 1700084C06 gene
Tssr88366 9 21091974 to 21092007 33 - TSS region transcription start site region 88366
Tyk2 9 21104068 to 21131243 27175 - protein coding gene tyrosine kinase 2
Tssr88367 9 21121651 to 21121660 9 - TSS region transcription start site region 88367
D9Mit361 9 21128961 to 21129069 108 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-361
Cpgi21420 9 21130964 to 21131610 646 CpG island CpG island 21420
Tssr88368 9 21131161 to 21131168 7 - TSS region transcription start site region 88368
Tssr88369 9 21131181 to 21131221 40 - TSS region transcription start site region 88369
Tssr88370 9 21131226 to 21131248 22 - TSS region transcription start site region 88370
Tssr88371 9 21131251 to 21131288 37 - TSS region transcription start site region 88371
Tssr83966 9 21131489 to 21131531 42 + TSS region transcription start site region 83966
Tssr83967 9 21136749 to 21136769 20 + TSS region transcription start site region 83967
Cdc37 9 21138541 to 21149977 11436 - protein coding gene cell division cycle 37
Tssr88372 9 21142050 to 21142068 18 - TSS region transcription start site region 88372
Tssr88373 9 21149564 to 21149568 4 - TSS region transcription start site region 88373
Cpgi21421 9 21149629 to 21150336 707 CpG island CpG island 21421
Tssr88374 9 21149873 to 21149887 14 - TSS region transcription start site region 88374
Tssr88375 9 21149894 to 21149978 84 - TSS region transcription start site region 88375
Gm35977 9 21149985 to 21157492 7507 + lncRNA gene predicted gene, 35977
Gm39301 9 21155383 to 21156010 627 + lncRNA gene predicted gene, 39301
D9Mit323 9 21156610 to 21156758 148 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 323
Gm36118 9 21160341 to 21165668 5327 - lncRNA gene predicted gene, 36118
Cpgi21422 9 21161156 to 21161879 723 CpG island CpG island 21422
Cpgi21423 9 21163955 to 21164570 615 CpG island CpG island 21423
Cpgi21424 9 21164656 to 21166822 2166 CpG island CpG island 21424
Pde4a 9 21165714 to 21213248 47534 + protein coding gene phosphodiesterase 4A, cAMP specific
Tssr83968 9 21165720 to 21165762 42 + TSS region transcription start site region 83968
Tssr88376 9 21166855 to 21166895 40 - TSS region transcription start site region 88376
Tssr83969 9 21167944 to 21167964 20 + TSS region transcription start site region 83969
Tssr88377 9 21168320 to 21168378 58 - TSS region transcription start site region 88377
Cpgi21425 9 21181367 to 21182025 658 CpG island CpG island 21425
Tssr83970 9 21181571 to 21181624 53 + TSS region transcription start site region 83970
Cpgi21426 9 21183986 to 21184510 524 CpG island CpG island 21426
Tssr83971 9 21184113 to 21184130 17 + TSS region transcription start site region 83971
Tssr83972 9 21184172 to 21184186 14 + TSS region transcription start site region 83972
Tssr83973 9 21184348 to 21184384 36 + TSS region transcription start site region 83973
Tssr83974 9 21196722 to 21196771 49 + TSS region transcription start site region 83974
Tssr83975 9 21200705 to 21200761 56 + TSS region transcription start site region 83975
Cpgi21427 9 21204891 to 21205158 267 CpG island CpG island 21427
Tssr83976 9 21220754 to 21220772 18 + TSS region transcription start site region 83976
Tssr88378 9 21224951 to 21224954 3 - TSS region transcription start site region 88378
Cpgi21428 9 21225267 to 21225470 203 CpG island CpG island 21428
Tssr83977 9 21225363 to 21225388 25 + TSS region transcription start site region 83977
Gm16754 9 21225371 to 21233046 7675 + antisense lncRNA gene predicted gene, 16754
Tssr83978 9 21225396 to 21225431 35 + TSS region transcription start site region 83978
Cpgi21429 9 21227481 to 21227651 170 CpG island CpG island 21429
Keap1 9 21229730 to 21239332 9602 - protein coding gene kelch-like ECH-associated protein 1
Cpgi21430 9 21231445 to 21231999 554 CpG island CpG island 21430
Cpgi21431 9 21233278 to 21234174 896 CpG island CpG island 21431
Tssr83979 9 21233509 to 21233520 11 + TSS region transcription start site region 83979
Tssr83980 9 21235597 to 21235615 18 + TSS region transcription start site region 83980
Cpgi21432 9 21237010 to 21237710 700 CpG island CpG island 21432
Tssr88379 9 21237153 to 21237165 12 - TSS region transcription start site region 88379
Tssr88380 9 21237174 to 21237208 34 - TSS region transcription start site region 88380
Tssr88381 9 21237215 to 21237230 15 - TSS region transcription start site region 88381
Cpgi21433 9 21238369 to 21239753 1384 CpG island CpG island 21433
Tssr88382 9 21238805 to 21238826 21 - TSS region transcription start site region 88382
Tssr88383 9 21238834 to 21238849 15 - TSS region transcription start site region 88383
Tssr88384 9 21238930 to 21238991 61 - TSS region transcription start site region 88384
Tssr88385 9 21239053 to 21239088 35 - TSS region transcription start site region 88385
Tssr88386 9 21239228 to 21239308 80 - TSS region transcription start site region 88386
Tssr88387 9 21239310 to 21239339 29 - TSS region transcription start site region 88387
S1pr5 9 21242917 to 21248443 5526 - protein coding gene sphingosine-1-phosphate receptor 5
Tssr83981 9 21243387 to 21243388 1 + TSS region transcription start site region 83981
Cpgi21434 9 21243847 to 21245510 1663 CpG island CpG island 21434
Gm48303 9 21247713 to 21249606 1893 + unclassified gene predicted gene, 48303
Cpgi21435 9 21248298 to 21248638 340 CpG island CpG island 21435
Tssr88388 9 21248410 to 21248422 12 - TSS region transcription start site region 88388
Tssr88389 9 21248437 to 21248450 13 - TSS region transcription start site region 88389
Cpgi21436 9 21264765 to 21265878 1113 CpG island CpG island 21436
Atg4d 9 21265257 to 21274837 9580 + protein coding gene autophagy related 4D, cysteine peptidase
Tssr83982 9 21265287 to 21265322 35 + TSS region transcription start site region 83982
Kri1 9 21273457 to 21287969 14512 - protein coding gene KRI1 homolog
Tssr2792 9 21287694 to 21287720 26 + TSS region transcription start site region 2792
Tssr2793 9 21287921 to 21287926 5 - TSS region transcription start site region 2793
Tssr88390 9 21287954 to 21287976 22 - TSS region transcription start site region 88390
Tssr2794 9 21288039 to 21288069 30 + TSS region transcription start site region 2794
Tssr2795 9 21288279 to 21288298 19 + TSS region transcription start site region 2795
Cdkn2d 9 21288459 to 21291402 2943 - protein coding gene cyclin dependent kinase inhibitor 2D
Tssr2796 9 21288722 to 21288728 6 + TSS region transcription start site region 2796
Tssr2797 9 21290476 to 21290481 5 - TSS region transcription start site region 2797
Tssr2798 9 21291033 to 21291055 22 - TSS region transcription start site region 2798
Tssr88391 9 21291124 to 21291162 38 - TSS region transcription start site region 88391
Tssr2799 9 21291249 to 21291263 14 - TSS region transcription start site region 2799
Tssr2800 9 21291356 to 21291363 7 - TSS region transcription start site region 2800
Tssr2801 9 21291397 to 21291408 11 - TSS region transcription start site region 2801
Tssr2802 9 21291413 to 21291431 18 - TSS region transcription start site region 2802
Tssr2803 9 21291744 to 21291761 17 + TSS region transcription start site region 2803
Ap1m2 9 21294615 to 21312349 17734 - protein coding gene adaptor protein complex AP-1, mu 2 subunit