Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:20952643-21053519

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dnmt1 9 20907209 to 20959888 52679 - protein coding gene DNA methyltransferase (cytosine-5) 1
Cpgi21407 9 20952216 to 20953115 899 CpG island CpG island 21407
Tssr88344 9 20952802 to 20952834 32 - TSS region transcription start site region 88344
Tssr88345 9 20952838 to 20952881 43 - TSS region transcription start site region 88345
Tssr2791 9 20953027 to 20953061 34 + TSS region transcription start site region 2791
Tssr88346 9 20959785 to 20959792 7 - TSS region transcription start site region 88346
S1pr2 9 20965952 to 20976793 10841 - protein coding gene sphingosine-1-phosphate receptor 2
Tssr83936 9 20972960 to 20972974 14 + TSS region transcription start site region 83936
Cpgi21408 9 20975401 to 20977079 1678 CpG island CpG island 21408
Tssr83937 9 20975912 to 20975927 15 + TSS region transcription start site region 83937
Tssr88347 9 20976671 to 20976719 48 - TSS region transcription start site region 88347
Tssr88348 9 20976721 to 20976748 27 - TSS region transcription start site region 88348
Tssr88349 9 20976762 to 20976774 12 - TSS region transcription start site region 88349
Tssr88350 9 20979306 to 20979315 9 - TSS region transcription start site region 88350
Tssr83938 9 20983529 to 20983545 16 + TSS region transcription start site region 83938
Cpgi21409 9 21002643 to 21003519 876 CpG island CpG island 21409
Mrpl4 9 21002738 to 21008839 6101 + protein coding gene mitochondrial ribosomal protein L4
Tssr83939 9 21002745 to 21002790 45 + TSS region transcription start site region 83939
Tssr83940 9 21002893 to 21002909 16 + TSS region transcription start site region 83940
Tssr83941 9 21002915 to 21002926 11 + TSS region transcription start site region 83941
Tssr83942 9 21003283 to 21003302 19 + TSS region transcription start site region 83942
Cpgi21410 9 21015314 to 21016280 966 CpG island CpG island 21410
Tssr83943 9 21015375 to 21015417 42 + TSS region transcription start site region 83943
Tssr83944 9 21015975 to 21015991 16 + TSS region transcription start site region 83944
Icam1 9 21015985 to 21028817 12832 + protein coding gene intercellular adhesion molecule 1
Tssr83945 9 21017095 to 21017102 7 + TSS region transcription start site region 83945
Tssr83946 9 21017846 to 21017857 11 + TSS region transcription start site region 83946
Tssr83947 9 21019100 to 21019111 11 + TSS region transcription start site region 83947
Tssr83948 9 21025467 to 21025476 9 + TSS region transcription start site region 83948
Tssr83949 9 21025479 to 21025511 32 + TSS region transcription start site region 83949
Tssr83950 9 21027515 to 21027526 11 + TSS region transcription start site region 83950
Tssr83951 9 21027822 to 21027836 14 + TSS region transcription start site region 83951
Tssr83952 9 21027921 to 21027938 17 + TSS region transcription start site region 83952
Tssr83953 9 21027950 to 21027964 14 + TSS region transcription start site region 83953
Tssr83954 9 21027978 to 21027991 13 + TSS region transcription start site region 83954
Tssr83955 9 21028067 to 21028085 18 + TSS region transcription start site region 83955
Tssr83956 9 21028143 to 21028155 12 + TSS region transcription start site region 83956
Tssr83957 9 21028215 to 21028228 13 + TSS region transcription start site region 83957
Tssr88351 9 21028253 to 21028284 31 - TSS region transcription start site region 88351
Tssr83958 9 21028257 to 21028285 28 + TSS region transcription start site region 83958
Tssr88352 9 21028300 to 21028311 11 - TSS region transcription start site region 88352
Gm47079 9 21028307 to 21032357 4050 - antisense lncRNA gene predicted gene, 47079
Tssr88353 9 21028384 to 21028409 25 - TSS region transcription start site region 88353
Tssr83959 9 21028457 to 21028476 19 + TSS region transcription start site region 83959
Cpgi21411 9 21029312 to 21030350 1038 CpG island CpG island 21411
Icam4 9 21029373 to 21030531 1158 + protein coding gene intercellular adhesion molecule 4, Landsteiner-Wiener blood group
Tssr83960 9 21029425 to 21029442 17 + TSS region transcription start site region 83960
Tssr83961 9 21029443 to 21029455 12 + TSS region transcription start site region 83961
Cpgi21412 9 21031141 to 21032643 1502 CpG island CpG island 21412
Tssr83962 9 21032054 to 21032085 31 + TSS region transcription start site region 83962
Icam5 9 21032073 to 21039036 6963 + protein coding gene intercellular adhesion molecule 5, telencephalin
Tssr83963 9 21032094 to 21032107 13 + TSS region transcription start site region 83963
Mir1900 9 21032251 to 21032328 77 - miRNA gene microRNA 1900
Cpgi21413 9 21032860 to 21033823 963 CpG island CpG island 21413
Tssr88354 9 21033322 to 21033337 15 - TSS region transcription start site region 88354
Gm26592 9 21034485 to 21037782 3297 - antisense lncRNA gene predicted gene, 26592
Cpgi21414 9 21035134 to 21035705 571 CpG island CpG island 21414
Cpgi21415 9 21036166 to 21038056 1890 CpG island CpG island 21415
Tssr88355 9 21037775 to 21037795 20 - TSS region transcription start site region 88355
D9Mit160 9 21038175 to 21038312 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 160
Cpgi21416 9 21038559 to 21038959 400 CpG island CpG island 21416