Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:20813143-21243155

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col5a3 9 20770050 to 20815067 45017 - protein coding gene collagen, type V, alpha 3
Cpgi21401 9 20814852 to 20815310 458 CpG island CpG island 21401
Tssr88332 9 20814993 to 20814998 5 - TSS region transcription start site region 88332
Tssr88333 9 20815014 to 20815029 15 - TSS region transcription start site region 88333
Tssr88334 9 20815048 to 20815069 21 - TSS region transcription start site region 88334
Tssr83923 9 20818490 to 20818506 16 + TSS region transcription start site region 83923
Rdh8 9 20818503 to 20826117 7614 + protein coding gene retinol dehydrogenase 8
Cpgi21402 9 20831050 to 20831209 159 CpG island CpG island 21402
Gm39300 9 20833445 to 20853928 20483 - lncRNA gene predicted gene, 39300
Tssr83924 9 20867112 to 20867135 23 + TSS region transcription start site region 83924
Cpgi21403 9 20868361 to 20869554 1193 CpG island CpG island 21403
Tssr83925 9 20868628 to 20868706 78 + TSS region transcription start site region 83925
A230050P20Rik 9 20868642 to 20874307 5665 + protein coding gene RIKEN cDNA A230050P20 gene
Tssr83926 9 20868723 to 20868741 18 + TSS region transcription start site region 83926
Tssr83927 9 20868842 to 20868880 38 + TSS region transcription start site region 83927
Angptl6 9 20873808 to 20879727 5919 - protein coding gene angiopoietin-like 6
Cpgi21404 9 20877836 to 20878802 966 CpG island CpG island 21404
Tssr88335 9 20879695 to 20879706 11 - TSS region transcription start site region 88335
Tssr88336 9 20879718 to 20879738 20 - TSS region transcription start site region 88336
Tssr88337 9 20879742 to 20879749 7 - TSS region transcription start site region 88337
Cpgi21405 9 20887783 to 20888875 1092 CpG island CpG island 21405
Tssr88338 9 20888127 to 20888155 28 - TSS region transcription start site region 88338
Ppan 9 20888175 to 20892178 4003 + protein coding gene peter pan homolog
Tssr83928 9 20888234 to 20888239 5 + TSS region transcription start site region 83928
Tssr83929 9 20888241 to 20888283 42 + TSS region transcription start site region 83929
Tssr83930 9 20888290 to 20888295 5 + TSS region transcription start site region 83930
Tssr83931 9 20888301 to 20888312 11 + TSS region transcription start site region 83931
Gm24067 9 20889484 to 20889568 84 + snoRNA gene predicted gene, 24067
Tssr83932 9 20889824 to 20889844 20 + TSS region transcription start site region 83932
Gm23008 9 20890757 to 20890836 79 + snoRNA gene predicted gene, 23008
Tssr83933 9 20894349 to 20894352 3 + TSS region transcription start site region 83933
Eif3g 9 20894349 to 20898590 4241 - protein coding gene eukaryotic translation initiation factor 3, subunit G
Tssr88339 9 20896160 to 20896183 23 - TSS region transcription start site region 88339
Cpgi21406 9 20897815 to 20898777 962 CpG island CpG island 21406
Tssr83934 9 20897886 to 20897915 29 + TSS region transcription start site region 83934
Tssr2789 9 20898571 to 20898575 4 - TSS region transcription start site region 2789
Tssr2790 9 20898576 to 20898586 10 - TSS region transcription start site region 2790
Tssr88340 9 20898592 to 20898631 39 - TSS region transcription start site region 88340
Dnmt1 9 20907209 to 20959888 52679 - protein coding gene DNA methyltransferase (cytosine-5) 1
Mir7081 9 20914090 to 20914164 74 - miRNA gene microRNA 7081
Tssr88341 9 20925844 to 20925854 10 - TSS region transcription start site region 88341
Tssr88342 9 20938099 to 20938114 15 - TSS region transcription start site region 88342
Tssr88343 9 20941787 to 20941798 11 - TSS region transcription start site region 88343
Tssr83935 9 20945021 to 20945039 18 + TSS region transcription start site region 83935
Cpgi21407 9 20952216 to 20953115 899 CpG island CpG island 21407
Tssr88344 9 20952802 to 20952834 32 - TSS region transcription start site region 88344
Tssr88345 9 20952838 to 20952881 43 - TSS region transcription start site region 88345
Tssr2791 9 20953027 to 20953061 34 + TSS region transcription start site region 2791
Tssr88346 9 20959785 to 20959792 7 - TSS region transcription start site region 88346
S1pr2 9 20965952 to 20976793 10841 - protein coding gene sphingosine-1-phosphate receptor 2
Tssr83936 9 20972960 to 20972974 14 + TSS region transcription start site region 83936
Cpgi21408 9 20975401 to 20977079 1678 CpG island CpG island 21408
Tssr83937 9 20975912 to 20975927 15 + TSS region transcription start site region 83937
Tssr88347 9 20976671 to 20976719 48 - TSS region transcription start site region 88347
Tssr88348 9 20976721 to 20976748 27 - TSS region transcription start site region 88348
Tssr88349 9 20976762 to 20976774 12 - TSS region transcription start site region 88349
Tssr88350 9 20979306 to 20979315 9 - TSS region transcription start site region 88350
Tssr83938 9 20983529 to 20983545 16 + TSS region transcription start site region 83938
Cpgi21409 9 21002643 to 21003519 876 CpG island CpG island 21409
Mrpl4 9 21002738 to 21008839 6101 + protein coding gene mitochondrial ribosomal protein L4
Tssr83939 9 21002745 to 21002790 45 + TSS region transcription start site region 83939
Tssr83940 9 21002893 to 21002909 16 + TSS region transcription start site region 83940
Tssr83941 9 21002915 to 21002926 11 + TSS region transcription start site region 83941
Tssr83942 9 21003283 to 21003302 19 + TSS region transcription start site region 83942
Cpgi21410 9 21015314 to 21016280 966 CpG island CpG island 21410
Tssr83943 9 21015375 to 21015417 42 + TSS region transcription start site region 83943
Tssr83944 9 21015975 to 21015991 16 + TSS region transcription start site region 83944
Icam1 9 21015985 to 21028817 12832 + protein coding gene intercellular adhesion molecule 1
Tssr83945 9 21017095 to 21017102 7 + TSS region transcription start site region 83945
Tssr83946 9 21017846 to 21017857 11 + TSS region transcription start site region 83946
Tssr83947 9 21019100 to 21019111 11 + TSS region transcription start site region 83947
Tssr83948 9 21025467 to 21025476 9 + TSS region transcription start site region 83948
Tssr83949 9 21025479 to 21025511 32 + TSS region transcription start site region 83949
Tssr83950 9 21027515 to 21027526 11 + TSS region transcription start site region 83950
Tssr83951 9 21027822 to 21027836 14 + TSS region transcription start site region 83951
Tssr83952 9 21027921 to 21027938 17 + TSS region transcription start site region 83952
Tssr83953 9 21027950 to 21027964 14 + TSS region transcription start site region 83953
Tssr83954 9 21027978 to 21027991 13 + TSS region transcription start site region 83954
Tssr83955 9 21028067 to 21028085 18 + TSS region transcription start site region 83955
Tssr83956 9 21028143 to 21028155 12 + TSS region transcription start site region 83956
Tssr83957 9 21028215 to 21028228 13 + TSS region transcription start site region 83957
Tssr88351 9 21028253 to 21028284 31 - TSS region transcription start site region 88351
Tssr83958 9 21028257 to 21028285 28 + TSS region transcription start site region 83958
Tssr88352 9 21028300 to 21028311 11 - TSS region transcription start site region 88352
Gm47079 9 21028307 to 21032357 4050 - antisense lncRNA gene predicted gene, 47079
Tssr88353 9 21028384 to 21028409 25 - TSS region transcription start site region 88353
Tssr83959 9 21028457 to 21028476 19 + TSS region transcription start site region 83959
Cpgi21411 9 21029312 to 21030350 1038 CpG island CpG island 21411
Icam4 9 21029373 to 21030531 1158 + protein coding gene intercellular adhesion molecule 4, Landsteiner-Wiener blood group
Tssr83960 9 21029425 to 21029442 17 + TSS region transcription start site region 83960
Tssr83961 9 21029443 to 21029455 12 + TSS region transcription start site region 83961
Cpgi21412 9 21031141 to 21032643 1502 CpG island CpG island 21412
Tssr83962 9 21032054 to 21032085 31 + TSS region transcription start site region 83962
Icam5 9 21032073 to 21039036 6963 + protein coding gene intercellular adhesion molecule 5, telencephalin
Tssr83963 9 21032094 to 21032107 13 + TSS region transcription start site region 83963
Mir1900 9 21032251 to 21032328 77 - miRNA gene microRNA 1900
Cpgi21413 9 21032860 to 21033823 963 CpG island CpG island 21413
Tssr88354 9 21033322 to 21033337 15 - TSS region transcription start site region 88354
Gm26592 9 21034485 to 21037782 3297 - antisense lncRNA gene predicted gene, 26592
Cpgi21414 9 21035134 to 21035705 571 CpG island CpG island 21414
Cpgi21415 9 21036166 to 21038056 1890 CpG island CpG island 21415
Tssr88355 9 21037775 to 21037795 20 - TSS region transcription start site region 88355
D9Mit160 9 21038175 to 21038312 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 160
Cpgi21416 9 21038559 to 21038959 400 CpG island CpG island 21416
Zglp1 9 21062393 to 21067093 4700 - protein coding gene zinc finger, GATA-like protein 1
Gm49373 9 21062400 to 21073096 10696 - protein coding gene predicted gene, 49373
Cpgi21417 9 21066810 to 21067251 441 CpG island CpG island 21417
Gm38431 9 21067514 to 21091997 24483 - lncRNA gene predicted gene, 38431
Fdx2 9 21067520 to 21073514 5994 - protein coding gene ferredoxin 2
Cpgi21418 9 21072909 to 21073749 840 CpG island CpG island 21418
Tssr88356 9 21073215 to 21073239 24 - TSS region transcription start site region 88356
Tssr88357 9 21073494 to 21073541 47 - TSS region transcription start site region 88357
Raver1 9 21074158 to 21091988 17830 - protein coding gene ribonucleoprotein, PTB-binding 1
Tssr88358 9 21074877 to 21074921 44 - TSS region transcription start site region 88358
Tssr88359 9 21075241 to 21075264 23 - TSS region transcription start site region 88359
Tssr88360 9 21075280 to 21075303 23 - TSS region transcription start site region 88360
Mir7082 9 21075497 to 21075588 91 - miRNA gene microRNA 7082
Tssr88361 9 21077186 to 21077189 3 - TSS region transcription start site region 88361
Tssr88362 9 21078478 to 21078510 32 - TSS region transcription start site region 88362
Tssr88363 9 21078634 to 21078658 24 - TSS region transcription start site region 88363
Tssr88364 9 21079464 to 21079503 39 - TSS region transcription start site region 88364
Tssr83964 9 21079731 to 21079735 4 + TSS region transcription start site region 83964
Tssr88365 9 21079798 to 21079809 11 - TSS region transcription start site region 88365
Cpgi21419 9 21091407 to 21092272 865 CpG island CpG island 21419
Tssr83965 9 21091728 to 21091767 39 + TSS region transcription start site region 83965
1700084C06Rik 9 21091755 to 21128393 36638 + antisense lncRNA gene RIKEN cDNA 1700084C06 gene
Tssr88366 9 21091974 to 21092007 33 - TSS region transcription start site region 88366
Tyk2 9 21104068 to 21131243 27175 - protein coding gene tyrosine kinase 2
Tssr88367 9 21121651 to 21121660 9 - TSS region transcription start site region 88367
D9Mit361 9 21128961 to 21129069 108 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-361
Cpgi21420 9 21130964 to 21131610 646 CpG island CpG island 21420
Tssr88368 9 21131161 to 21131168 7 - TSS region transcription start site region 88368
Tssr88369 9 21131181 to 21131221 40 - TSS region transcription start site region 88369
Tssr88370 9 21131226 to 21131248 22 - TSS region transcription start site region 88370
Tssr88371 9 21131251 to 21131288 37 - TSS region transcription start site region 88371
Tssr83966 9 21131489 to 21131531 42 + TSS region transcription start site region 83966
Tssr83967 9 21136749 to 21136769 20 + TSS region transcription start site region 83967
Cdc37 9 21138541 to 21149977 11436 - protein coding gene cell division cycle 37
Tssr88372 9 21142050 to 21142068 18 - TSS region transcription start site region 88372
Tssr88373 9 21149564 to 21149568 4 - TSS region transcription start site region 88373
Cpgi21421 9 21149629 to 21150336 707 CpG island CpG island 21421
Tssr88374 9 21149873 to 21149887 14 - TSS region transcription start site region 88374
Tssr88375 9 21149894 to 21149978 84 - TSS region transcription start site region 88375
Gm35977 9 21149985 to 21157492 7507 + lncRNA gene predicted gene, 35977
Gm39301 9 21155383 to 21156010 627 + lncRNA gene predicted gene, 39301
D9Mit323 9 21156610 to 21156758 148 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 323
Gm36118 9 21160341 to 21165668 5327 - lncRNA gene predicted gene, 36118
Cpgi21422 9 21161156 to 21161879 723 CpG island CpG island 21422
Cpgi21423 9 21163955 to 21164570 615 CpG island CpG island 21423
Cpgi21424 9 21164656 to 21166822 2166 CpG island CpG island 21424
Pde4a 9 21165714 to 21213248 47534 + protein coding gene phosphodiesterase 4A, cAMP specific
Tssr83968 9 21165720 to 21165762 42 + TSS region transcription start site region 83968
Tssr88376 9 21166855 to 21166895 40 - TSS region transcription start site region 88376
Tssr83969 9 21167944 to 21167964 20 + TSS region transcription start site region 83969
Tssr88377 9 21168320 to 21168378 58 - TSS region transcription start site region 88377
Cpgi21425 9 21181367 to 21182025 658 CpG island CpG island 21425
Tssr83970 9 21181571 to 21181624 53 + TSS region transcription start site region 83970
Cpgi21426 9 21183986 to 21184510 524 CpG island CpG island 21426
Tssr83971 9 21184113 to 21184130 17 + TSS region transcription start site region 83971
Tssr83972 9 21184172 to 21184186 14 + TSS region transcription start site region 83972
Tssr83973 9 21184348 to 21184384 36 + TSS region transcription start site region 83973
Tssr83974 9 21196722 to 21196771 49 + TSS region transcription start site region 83974
Tssr83975 9 21200705 to 21200761 56 + TSS region transcription start site region 83975
Cpgi21427 9 21204891 to 21205158 267 CpG island CpG island 21427
Tssr83976 9 21220754 to 21220772 18 + TSS region transcription start site region 83976
Tssr88378 9 21224951 to 21224954 3 - TSS region transcription start site region 88378
Cpgi21428 9 21225267 to 21225470 203 CpG island CpG island 21428
Tssr83977 9 21225363 to 21225388 25 + TSS region transcription start site region 83977
Gm16754 9 21225371 to 21233046 7675 + antisense lncRNA gene predicted gene, 16754
Tssr83978 9 21225396 to 21225431 35 + TSS region transcription start site region 83978
Cpgi21429 9 21227481 to 21227651 170 CpG island CpG island 21429
Keap1 9 21229730 to 21239332 9602 - protein coding gene kelch-like ECH-associated protein 1
Cpgi21430 9 21231445 to 21231999 554 CpG island CpG island 21430
Cpgi21431 9 21233278 to 21234174 896 CpG island CpG island 21431
Tssr83979 9 21233509 to 21233520 11 + TSS region transcription start site region 83979
Tssr83980 9 21235597 to 21235615 18 + TSS region transcription start site region 83980
Cpgi21432 9 21237010 to 21237710 700 CpG island CpG island 21432
Tssr88379 9 21237153 to 21237165 12 - TSS region transcription start site region 88379
Tssr88380 9 21237174 to 21237208 34 - TSS region transcription start site region 88380
Tssr88381 9 21237215 to 21237230 15 - TSS region transcription start site region 88381
Cpgi21433 9 21238369 to 21239753 1384 CpG island CpG island 21433
Tssr88382 9 21238805 to 21238826 21 - TSS region transcription start site region 88382
Tssr88383 9 21238834 to 21238849 15 - TSS region transcription start site region 88383
Tssr88384 9 21238930 to 21238991 61 - TSS region transcription start site region 88384
Tssr88385 9 21239053 to 21239088 35 - TSS region transcription start site region 88385
Tssr88386 9 21239228 to 21239308 80 - TSS region transcription start site region 88386
Tssr88387 9 21239310 to 21239339 29 - TSS region transcription start site region 88387
S1pr5 9 21242917 to 21248443 5526 - protein coding gene sphingosine-1-phosphate receptor 5