Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:20645702-20846594

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37 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ubl5 9 20643318 to 20646790 3472 + protein coding gene ubiquitin-like 5
Tssr83919 9 20646658 to 20646680 22 + TSS region transcription start site region 83919
Cpgi21395 9 20651754 to 20652658 904 CpG island CpG island 21395
Tssr83920 9 20652090 to 20652104 14 + TSS region transcription start site region 83920
Tssr83921 9 20652107 to 20652138 31 + TSS region transcription start site region 83921
Pin1 9 20652130 to 20666584 14454 + protein coding gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
Tssr83922 9 20653979 to 20653997 18 + TSS region transcription start site region 83922
Olfm2 9 20667691 to 20746307 78616 - protein coding gene olfactomedin 2
Tssr88321 9 20667853 to 20667919 66 - TSS region transcription start site region 88321
Tssr88322 9 20667924 to 20667996 72 - TSS region transcription start site region 88322
Tssr88323 9 20667999 to 20668014 15 - TSS region transcription start site region 88323
Tssr88324 9 20668044 to 20668096 52 - TSS region transcription start site region 88324
Cpgi21396 9 20668140 to 20668607 467 CpG island CpG island 21396
Cpgi21397 9 20672051 to 20672287 236 CpG island CpG island 21397
9430006E15Rik 9 20687817 to 20688833 1016 unclassified gene RIKEN cDNA 9430006E15 gene
Cpgi21398 9 20694852 to 20695152 300 CpG island CpG island 21398
Cpgi21399 9 20726275 to 20728422 2147 CpG island CpG island 21399
Tssr88325 9 20726965 to 20726984 19 - TSS region transcription start site region 88325
Tssr88326 9 20726996 to 20727012 16 - TSS region transcription start site region 88326
Gm39299 9 20738791 to 20746153 7362 + lncRNA gene predicted gene, 39299
Cpgi21400 9 20745702 to 20746594 892 CpG island CpG island 21400
Tssr88327 9 20746233 to 20746251 18 - TSS region transcription start site region 88327
Tssr88328 9 20746262 to 20746280 18 - TSS region transcription start site region 88328
Tssr88329 9 20746318 to 20746339 21 - TSS region transcription start site region 88329
Tssr88330 9 20746347 to 20746368 21 - TSS region transcription start site region 88330
Tssr88331 9 20746384 to 20746401 17 - TSS region transcription start site region 88331
Gm35860 9 20749265 to 20759126 9861 - lncRNA gene predicted gene, 35860
Col5a3 9 20770050 to 20815067 45017 - protein coding gene collagen, type V, alpha 3
Gm26274 9 20807034 to 20807354 320 + unclassified non-coding RNA gene predicted gene, 26274
Cpgi21401 9 20814852 to 20815310 458 CpG island CpG island 21401
Tssr88332 9 20814993 to 20814998 5 - TSS region transcription start site region 88332
Tssr88333 9 20815014 to 20815029 15 - TSS region transcription start site region 88333
Tssr88334 9 20815048 to 20815069 21 - TSS region transcription start site region 88334
Tssr83923 9 20818490 to 20818506 16 + TSS region transcription start site region 83923
Rdh8 9 20818503 to 20826117 7614 + protein coding gene retinol dehydrogenase 8
Cpgi21402 9 20831050 to 20831209 159 CpG island CpG island 21402
Gm39300 9 20833445 to 20853928 20483 - lncRNA gene predicted gene, 39300