Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:20641384-20851401

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fbxl12 9 20637749 to 20644767 7018 - protein coding gene F-box and leucine-rich repeat protein 12
Cpgi21393 9 20641912 to 20643419 1507 CpG island CpG island 21393
Tssr2788 9 20642115 to 20642120 5 + TSS region transcription start site region 2788
Tssr88312 9 20642280 to 20642322 42 - TSS region transcription start site region 88312
Tssr88313 9 20642483 to 20642506 23 - TSS region transcription start site region 88313
Tssr88314 9 20642511 to 20642536 25 - TSS region transcription start site region 88314
Tssr88315 9 20642586 to 20642606 20 - TSS region transcription start site region 88315
Tssr88316 9 20642624 to 20642637 13 - TSS region transcription start site region 88316
Tssr83905 9 20642684 to 20642698 14 + TSS region transcription start site region 83905
Tssr83906 9 20642702 to 20642712 10 + TSS region transcription start site region 83906
Tssr83907 9 20642869 to 20642898 29 + TSS region transcription start site region 83907
Tssr83908 9 20642913 to 20642942 29 + TSS region transcription start site region 83908
Tssr83909 9 20642946 to 20642960 14 + TSS region transcription start site region 83909
Tssr88317 9 20643163 to 20643196 33 - TSS region transcription start site region 88317
Tssr88318 9 20643197 to 20643215 18 - TSS region transcription start site region 88318
Tssr83910 9 20643290 to 20643342 52 + TSS region transcription start site region 83910
Ubl5 9 20643318 to 20646790 3472 + protein coding gene ubiquitin-like 5
Tssr83911 9 20643352 to 20643368 16 + TSS region transcription start site region 83911
Tssr83912 9 20643387 to 20643396 9 + TSS region transcription start site region 83912
Tssr83913 9 20643404 to 20643411 7 + TSS region transcription start site region 83913
Tssr83914 9 20643607 to 20643634 27 + TSS region transcription start site region 83914
Tssr83915 9 20644333 to 20644357 24 + TSS region transcription start site region 83915
Cpgi21394 9 20644360 to 20645481 1121 CpG island CpG island 21394
Tssr88319 9 20644726 to 20644789 63 - TSS region transcription start site region 88319
Tssr83916 9 20644792 to 20644839 47 + TSS region transcription start site region 83916
Tssr83917 9 20644846 to 20644848 2 + TSS region transcription start site region 83917
Tssr83918 9 20644851 to 20644864 13 + TSS region transcription start site region 83918
Tssr88320 9 20645276 to 20645292 16 - TSS region transcription start site region 88320
Tssr83919 9 20646658 to 20646680 22 + TSS region transcription start site region 83919
Cpgi21395 9 20651754 to 20652658 904 CpG island CpG island 21395
Tssr83920 9 20652090 to 20652104 14 + TSS region transcription start site region 83920
Tssr83921 9 20652107 to 20652138 31 + TSS region transcription start site region 83921
Pin1 9 20652130 to 20666584 14454 + protein coding gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
Tssr83922 9 20653979 to 20653997 18 + TSS region transcription start site region 83922
Olfm2 9 20667691 to 20746307 78616 - protein coding gene olfactomedin 2
Tssr88321 9 20667853 to 20667919 66 - TSS region transcription start site region 88321
Tssr88322 9 20667924 to 20667996 72 - TSS region transcription start site region 88322
Tssr88323 9 20667999 to 20668014 15 - TSS region transcription start site region 88323
Tssr88324 9 20668044 to 20668096 52 - TSS region transcription start site region 88324
Cpgi21396 9 20668140 to 20668607 467 CpG island CpG island 21396
Cpgi21397 9 20672051 to 20672287 236 CpG island CpG island 21397
9430006E15Rik 9 20687817 to 20688833 1016 unclassified gene RIKEN cDNA 9430006E15 gene
Cpgi21398 9 20694852 to 20695152 300 CpG island CpG island 21398
Cpgi21399 9 20726275 to 20728422 2147 CpG island CpG island 21399
Tssr88325 9 20726965 to 20726984 19 - TSS region transcription start site region 88325
Tssr88326 9 20726996 to 20727012 16 - TSS region transcription start site region 88326
Gm39299 9 20738791 to 20746153 7362 + lncRNA gene predicted gene, 39299
Cpgi21400 9 20745702 to 20746594 892 CpG island CpG island 21400
Tssr88327 9 20746233 to 20746251 18 - TSS region transcription start site region 88327
Tssr88328 9 20746262 to 20746280 18 - TSS region transcription start site region 88328
Tssr88329 9 20746318 to 20746339 21 - TSS region transcription start site region 88329
Tssr88330 9 20746347 to 20746368 21 - TSS region transcription start site region 88330
Tssr88331 9 20746384 to 20746401 17 - TSS region transcription start site region 88331
Gm35860 9 20749265 to 20759126 9861 - lncRNA gene predicted gene, 35860
Col5a3 9 20770050 to 20815067 45017 - protein coding gene collagen, type V, alpha 3
Gm26274 9 20807034 to 20807354 320 + unclassified non-coding RNA gene predicted gene, 26274
Cpgi21401 9 20814852 to 20815310 458 CpG island CpG island 21401
Tssr88332 9 20814993 to 20814998 5 - TSS region transcription start site region 88332
Tssr88333 9 20815014 to 20815029 15 - TSS region transcription start site region 88333
Tssr88334 9 20815048 to 20815069 21 - TSS region transcription start site region 88334
Tssr83923 9 20818490 to 20818506 16 + TSS region transcription start site region 83923
Rdh8 9 20818503 to 20826117 7614 + protein coding gene retinol dehydrogenase 8
Cpgi21402 9 20831050 to 20831209 159 CpG island CpG island 21402
Gm39300 9 20833445 to 20853928 20483 - lncRNA gene predicted gene, 39300