Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:20579306-21379315

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314 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21391 9 20581159 to 20581740 581 CpG island CpG island 21391
Tssr88309 9 20581293 to 20581306 13 - TSS region transcription start site region 88309
Tssr83901 9 20581296 to 20581333 37 + TSS region transcription start site region 83901
Zfp846 9 20581328 to 20605404 24076 + protein coding gene zinc finger protein 846
Tssr83902 9 20581345 to 20581359 14 + TSS region transcription start site region 83902
Tssr83903 9 20581424 to 20581458 34 + TSS region transcription start site region 83903
Tssr83904 9 20581507 to 20581588 81 + TSS region transcription start site region 83904
D9Mit283.2 9 20605898 to 20606039 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 283.2
Gm48069 9 20606133 to 20607616 1483 - unclassified gene predicted gene, 48069
Cpgi21392 9 20607051 to 20607911 860 CpG island CpG island 21392
Fbxl12os 9 20607475 to 20617271 9796 + antisense lncRNA gene F-box and leucine-rich repeat protein 12, opposite strand
Gm26521 9 20607766 to 20612485 4719 - lincRNA gene predicted gene, 26521
Tssr88310 9 20636370 to 20636380 10 - TSS region transcription start site region 88310
Fbxl12 9 20637749 to 20644767 7018 - protein coding gene F-box and leucine-rich repeat protein 12
Tssr88311 9 20640397 to 20640401 4 - TSS region transcription start site region 88311
Cpgi21393 9 20641912 to 20643419 1507 CpG island CpG island 21393
Tssr2788 9 20642115 to 20642120 5 + TSS region transcription start site region 2788
Tssr88312 9 20642280 to 20642322 42 - TSS region transcription start site region 88312
Tssr88313 9 20642483 to 20642506 23 - TSS region transcription start site region 88313
Tssr88314 9 20642511 to 20642536 25 - TSS region transcription start site region 88314
Tssr88315 9 20642586 to 20642606 20 - TSS region transcription start site region 88315
Tssr88316 9 20642624 to 20642637 13 - TSS region transcription start site region 88316
Tssr83905 9 20642684 to 20642698 14 + TSS region transcription start site region 83905
Tssr83906 9 20642702 to 20642712 10 + TSS region transcription start site region 83906
Tssr83907 9 20642869 to 20642898 29 + TSS region transcription start site region 83907
Tssr83908 9 20642913 to 20642942 29 + TSS region transcription start site region 83908
Tssr83909 9 20642946 to 20642960 14 + TSS region transcription start site region 83909
Tssr88317 9 20643163 to 20643196 33 - TSS region transcription start site region 88317
Tssr88318 9 20643197 to 20643215 18 - TSS region transcription start site region 88318
Tssr83910 9 20643290 to 20643342 52 + TSS region transcription start site region 83910
Ubl5 9 20643318 to 20646790 3472 + protein coding gene ubiquitin-like 5
Tssr83911 9 20643352 to 20643368 16 + TSS region transcription start site region 83911
Tssr83912 9 20643387 to 20643396 9 + TSS region transcription start site region 83912
Tssr83913 9 20643404 to 20643411 7 + TSS region transcription start site region 83913
Tssr83914 9 20643607 to 20643634 27 + TSS region transcription start site region 83914
Tssr83915 9 20644333 to 20644357 24 + TSS region transcription start site region 83915
Cpgi21394 9 20644360 to 20645481 1121 CpG island CpG island 21394
Tssr88319 9 20644726 to 20644789 63 - TSS region transcription start site region 88319
Tssr83916 9 20644792 to 20644839 47 + TSS region transcription start site region 83916
Tssr83917 9 20644846 to 20644848 2 + TSS region transcription start site region 83917
Tssr83918 9 20644851 to 20644864 13 + TSS region transcription start site region 83918
Tssr88320 9 20645276 to 20645292 16 - TSS region transcription start site region 88320
Tssr83919 9 20646658 to 20646680 22 + TSS region transcription start site region 83919
Cpgi21395 9 20651754 to 20652658 904 CpG island CpG island 21395
Tssr83920 9 20652090 to 20652104 14 + TSS region transcription start site region 83920
Tssr83921 9 20652107 to 20652138 31 + TSS region transcription start site region 83921
Pin1 9 20652130 to 20666584 14454 + protein coding gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
Tssr83922 9 20653979 to 20653997 18 + TSS region transcription start site region 83922
Olfm2 9 20667691 to 20746307 78616 - protein coding gene olfactomedin 2
Tssr88321 9 20667853 to 20667919 66 - TSS region transcription start site region 88321
Tssr88322 9 20667924 to 20667996 72 - TSS region transcription start site region 88322
Tssr88323 9 20667999 to 20668014 15 - TSS region transcription start site region 88323
Tssr88324 9 20668044 to 20668096 52 - TSS region transcription start site region 88324
Cpgi21396 9 20668140 to 20668607 467 CpG island CpG island 21396
Cpgi21397 9 20672051 to 20672287 236 CpG island CpG island 21397
9430006E15Rik 9 20687817 to 20688833 1016 unclassified gene RIKEN cDNA 9430006E15 gene
Cpgi21398 9 20694852 to 20695152 300 CpG island CpG island 21398
Cpgi21399 9 20726275 to 20728422 2147 CpG island CpG island 21399
Tssr88325 9 20726965 to 20726984 19 - TSS region transcription start site region 88325
Tssr88326 9 20726996 to 20727012 16 - TSS region transcription start site region 88326
Gm39299 9 20738791 to 20746153 7362 + lncRNA gene predicted gene, 39299
Cpgi21400 9 20745702 to 20746594 892 CpG island CpG island 21400
Tssr88327 9 20746233 to 20746251 18 - TSS region transcription start site region 88327
Tssr88328 9 20746262 to 20746280 18 - TSS region transcription start site region 88328
Tssr88329 9 20746318 to 20746339 21 - TSS region transcription start site region 88329
Tssr88330 9 20746347 to 20746368 21 - TSS region transcription start site region 88330
Tssr88331 9 20746384 to 20746401 17 - TSS region transcription start site region 88331
Gm35860 9 20749265 to 20759126 9861 - lncRNA gene predicted gene, 35860
Col5a3 9 20770050 to 20815067 45017 - protein coding gene collagen, type V, alpha 3
Gm26274 9 20807034 to 20807354 320 + unclassified non-coding RNA gene predicted gene, 26274
Cpgi21401 9 20814852 to 20815310 458 CpG island CpG island 21401
Tssr88332 9 20814993 to 20814998 5 - TSS region transcription start site region 88332
Tssr88333 9 20815014 to 20815029 15 - TSS region transcription start site region 88333
Tssr88334 9 20815048 to 20815069 21 - TSS region transcription start site region 88334
Tssr83923 9 20818490 to 20818506 16 + TSS region transcription start site region 83923
Rdh8 9 20818503 to 20826117 7614 + protein coding gene retinol dehydrogenase 8
Cpgi21402 9 20831050 to 20831209 159 CpG island CpG island 21402
Gm39300 9 20833445 to 20853928 20483 - lncRNA gene predicted gene, 39300
Tssr83924 9 20867112 to 20867135 23 + TSS region transcription start site region 83924
Cpgi21403 9 20868361 to 20869554 1193 CpG island CpG island 21403
Tssr83925 9 20868628 to 20868706 78 + TSS region transcription start site region 83925
A230050P20Rik 9 20868642 to 20874307 5665 + protein coding gene RIKEN cDNA A230050P20 gene
Tssr83926 9 20868723 to 20868741 18 + TSS region transcription start site region 83926
Tssr83927 9 20868842 to 20868880 38 + TSS region transcription start site region 83927
Angptl6 9 20873808 to 20879727 5919 - protein coding gene angiopoietin-like 6
Cpgi21404 9 20877836 to 20878802 966 CpG island CpG island 21404
Tssr88335 9 20879695 to 20879706 11 - TSS region transcription start site region 88335
Tssr88336 9 20879718 to 20879738 20 - TSS region transcription start site region 88336
Tssr88337 9 20879742 to 20879749 7 - TSS region transcription start site region 88337
Cpgi21405 9 20887783 to 20888875 1092 CpG island CpG island 21405
Tssr88338 9 20888127 to 20888155 28 - TSS region transcription start site region 88338
Ppan 9 20888175 to 20892178 4003 + protein coding gene peter pan homolog
Tssr83928 9 20888234 to 20888239 5 + TSS region transcription start site region 83928
Tssr83929 9 20888241 to 20888283 42 + TSS region transcription start site region 83929
Tssr83930 9 20888290 to 20888295 5 + TSS region transcription start site region 83930
Tssr83931 9 20888301 to 20888312 11 + TSS region transcription start site region 83931
Gm24067 9 20889484 to 20889568 84 + snoRNA gene predicted gene, 24067
Tssr83932 9 20889824 to 20889844 20 + TSS region transcription start site region 83932
Gm23008 9 20890757 to 20890836 79 + snoRNA gene predicted gene, 23008
Eif3g 9 20894349 to 20898590 4241 - protein coding gene eukaryotic translation initiation factor 3, subunit G
Tssr83933 9 20894349 to 20894352 3 + TSS region transcription start site region 83933
Tssr88339 9 20896160 to 20896183 23 - TSS region transcription start site region 88339
Cpgi21406 9 20897815 to 20898777 962 CpG island CpG island 21406
Tssr83934 9 20897886 to 20897915 29 + TSS region transcription start site region 83934
Tssr2789 9 20898571 to 20898575 4 - TSS region transcription start site region 2789
Tssr2790 9 20898576 to 20898586 10 - TSS region transcription start site region 2790
Tssr88340 9 20898592 to 20898631 39 - TSS region transcription start site region 88340
Dnmt1 9 20907209 to 20959888 52679 - protein coding gene DNA methyltransferase (cytosine-5) 1
Mir7081 9 20914090 to 20914164 74 - miRNA gene microRNA 7081
Tssr88341 9 20925844 to 20925854 10 - TSS region transcription start site region 88341
Tssr88342 9 20938099 to 20938114 15 - TSS region transcription start site region 88342
Tssr88343 9 20941787 to 20941798 11 - TSS region transcription start site region 88343
Tssr83935 9 20945021 to 20945039 18 + TSS region transcription start site region 83935
Cpgi21407 9 20952216 to 20953115 899 CpG island CpG island 21407
Tssr88344 9 20952802 to 20952834 32 - TSS region transcription start site region 88344
Tssr88345 9 20952838 to 20952881 43 - TSS region transcription start site region 88345
Tssr2791 9 20953027 to 20953061 34 + TSS region transcription start site region 2791
Tssr88346 9 20959785 to 20959792 7 - TSS region transcription start site region 88346
S1pr2 9 20965952 to 20976793 10841 - protein coding gene sphingosine-1-phosphate receptor 2
Tssr83936 9 20972960 to 20972974 14 + TSS region transcription start site region 83936
Cpgi21408 9 20975401 to 20977079 1678 CpG island CpG island 21408
Tssr83937 9 20975912 to 20975927 15 + TSS region transcription start site region 83937
Tssr88347 9 20976671 to 20976719 48 - TSS region transcription start site region 88347
Tssr88348 9 20976721 to 20976748 27 - TSS region transcription start site region 88348
Tssr88349 9 20976762 to 20976774 12 - TSS region transcription start site region 88349
Tssr88350 9 20979306 to 20979315 9 - TSS region transcription start site region 88350
Tssr83938 9 20983529 to 20983545 16 + TSS region transcription start site region 83938
Cpgi21409 9 21002643 to 21003519 876 CpG island CpG island 21409
Mrpl4 9 21002738 to 21008839 6101 + protein coding gene mitochondrial ribosomal protein L4
Tssr83939 9 21002745 to 21002790 45 + TSS region transcription start site region 83939
Tssr83940 9 21002893 to 21002909 16 + TSS region transcription start site region 83940
Tssr83941 9 21002915 to 21002926 11 + TSS region transcription start site region 83941
Tssr83942 9 21003283 to 21003302 19 + TSS region transcription start site region 83942
Cpgi21410 9 21015314 to 21016280 966 CpG island CpG island 21410
Tssr83943 9 21015375 to 21015417 42 + TSS region transcription start site region 83943
Tssr83944 9 21015975 to 21015991 16 + TSS region transcription start site region 83944
Icam1 9 21015985 to 21028817 12832 + protein coding gene intercellular adhesion molecule 1
Tssr83945 9 21017095 to 21017102 7 + TSS region transcription start site region 83945
Tssr83946 9 21017846 to 21017857 11 + TSS region transcription start site region 83946
Tssr83947 9 21019100 to 21019111 11 + TSS region transcription start site region 83947
Tssr83948 9 21025467 to 21025476 9 + TSS region transcription start site region 83948
Tssr83949 9 21025479 to 21025511 32 + TSS region transcription start site region 83949
Tssr83950 9 21027515 to 21027526 11 + TSS region transcription start site region 83950
Tssr83951 9 21027822 to 21027836 14 + TSS region transcription start site region 83951
Tssr83952 9 21027921 to 21027938 17 + TSS region transcription start site region 83952
Tssr83953 9 21027950 to 21027964 14 + TSS region transcription start site region 83953
Tssr83954 9 21027978 to 21027991 13 + TSS region transcription start site region 83954
Tssr83955 9 21028067 to 21028085 18 + TSS region transcription start site region 83955
Tssr83956 9 21028143 to 21028155 12 + TSS region transcription start site region 83956
Tssr83957 9 21028215 to 21028228 13 + TSS region transcription start site region 83957
Tssr88351 9 21028253 to 21028284 31 - TSS region transcription start site region 88351
Tssr83958 9 21028257 to 21028285 28 + TSS region transcription start site region 83958
Tssr88352 9 21028300 to 21028311 11 - TSS region transcription start site region 88352
Gm47079 9 21028307 to 21032357 4050 - antisense lncRNA gene predicted gene, 47079
Tssr88353 9 21028384 to 21028409 25 - TSS region transcription start site region 88353
Tssr83959 9 21028457 to 21028476 19 + TSS region transcription start site region 83959
Cpgi21411 9 21029312 to 21030350 1038 CpG island CpG island 21411
Icam4 9 21029373 to 21030531 1158 + protein coding gene intercellular adhesion molecule 4, Landsteiner-Wiener blood group
Tssr83960 9 21029425 to 21029442 17 + TSS region transcription start site region 83960
Tssr83961 9 21029443 to 21029455 12 + TSS region transcription start site region 83961
Cpgi21412 9 21031141 to 21032643 1502 CpG island CpG island 21412
Tssr83962 9 21032054 to 21032085 31 + TSS region transcription start site region 83962
Icam5 9 21032073 to 21039036 6963 + protein coding gene intercellular adhesion molecule 5, telencephalin
Tssr83963 9 21032094 to 21032107 13 + TSS region transcription start site region 83963
Mir1900 9 21032251 to 21032328 77 - miRNA gene microRNA 1900
Cpgi21413 9 21032860 to 21033823 963 CpG island CpG island 21413
Tssr88354 9 21033322 to 21033337 15 - TSS region transcription start site region 88354
Gm26592 9 21034485 to 21037782 3297 - antisense lncRNA gene predicted gene, 26592
Cpgi21414 9 21035134 to 21035705 571 CpG island CpG island 21414
Cpgi21415 9 21036166 to 21038056 1890 CpG island CpG island 21415
Tssr88355 9 21037775 to 21037795 20 - TSS region transcription start site region 88355
D9Mit160 9 21038175 to 21038312 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 160
Cpgi21416 9 21038559 to 21038959 400 CpG island CpG island 21416
Zglp1 9 21062393 to 21067093 4700 - protein coding gene zinc finger, GATA-like protein 1
Gm49373 9 21062400 to 21073096 10696 - protein coding gene predicted gene, 49373
Cpgi21417 9 21066810 to 21067251 441 CpG island CpG island 21417
Gm38431 9 21067514 to 21091997 24483 - lncRNA gene predicted gene, 38431
Fdx2 9 21067520 to 21073514 5994 - protein coding gene ferredoxin 2
Cpgi21418 9 21072909 to 21073749 840 CpG island CpG island 21418
Tssr88356 9 21073215 to 21073239 24 - TSS region transcription start site region 88356
Tssr88357 9 21073494 to 21073541 47 - TSS region transcription start site region 88357
Raver1 9 21074158 to 21091988 17830 - protein coding gene ribonucleoprotein, PTB-binding 1
Tssr88358 9 21074877 to 21074921 44 - TSS region transcription start site region 88358
Tssr88359 9 21075241 to 21075264 23 - TSS region transcription start site region 88359
Tssr88360 9 21075280 to 21075303 23 - TSS region transcription start site region 88360
Mir7082 9 21075497 to 21075588 91 - miRNA gene microRNA 7082
Tssr88361 9 21077186 to 21077189 3 - TSS region transcription start site region 88361
Tssr88362 9 21078478 to 21078510 32 - TSS region transcription start site region 88362
Tssr88363 9 21078634 to 21078658 24 - TSS region transcription start site region 88363
Tssr88364 9 21079464 to 21079503 39 - TSS region transcription start site region 88364
Tssr83964 9 21079731 to 21079735 4 + TSS region transcription start site region 83964
Tssr88365 9 21079798 to 21079809 11 - TSS region transcription start site region 88365
Cpgi21419 9 21091407 to 21092272 865 CpG island CpG island 21419
Tssr83965 9 21091728 to 21091767 39 + TSS region transcription start site region 83965
1700084C06Rik 9 21091755 to 21128393 36638 + antisense lncRNA gene RIKEN cDNA 1700084C06 gene
Tssr88366 9 21091974 to 21092007 33 - TSS region transcription start site region 88366
Tyk2 9 21104068 to 21131243 27175 - protein coding gene tyrosine kinase 2
Tssr88367 9 21121651 to 21121660 9 - TSS region transcription start site region 88367
D9Mit361 9 21128961 to 21129069 108 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-361
Cpgi21420 9 21130964 to 21131610 646 CpG island CpG island 21420