Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:20355975-21675991

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427 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zfp560 9 20345136 to 20385158 40022 - protein coding gene zinc finger protein 560
Cpgi21386 9 20384904 to 20385594 690 CpG island CpG island 21386
Tssr88293 9 20385090 to 20385146 56 - TSS region transcription start site region 88293
4921534A09Rik 9 20385234 to 20387728 2494 + unclassified gene RIKEN cDNA 4921534A09 gene
Gm29761 9 20399922 to 20401860 1938 - pseudogene predicted gene, 29761
Gm48729 9 20413175 to 20413387 212 + pseudogene predicted gene, 48729
Zfp26 9 20428449 to 20460162 31713 - protein coding gene zinc finger protein 26
Tssr88294 9 20431245 to 20431249 4 - TSS region transcription start site region 88294
Gm26733 9 20432760 to 20563282 130522 + lincRNA gene predicted gene, 26733
Tssr88295 9 20450084 to 20450087 3 - TSS region transcription start site region 88295
Tssr88296 9 20451859 to 20451862 3 - TSS region transcription start site region 88296
Gm48738 9 20456783 to 20457171 388 - pseudogene predicted gene, 48738
Cpgi21387 9 20459559 to 20460083 524 CpG island CpG island 21387
Tssr88297 9 20459950 to 20460004 54 - TSS region transcription start site region 88297
Zfp426 9 20468549 to 20492746 24197 - protein coding gene zinc finger protein 426
Gm23316 9 20477865 to 20477978 113 + snRNA gene predicted gene, 23316
Tssr88298 9 20480837 to 20480856 19 - TSS region transcription start site region 88298
Tssr88299 9 20480866 to 20480888 22 - TSS region transcription start site region 88299
Tssr88300 9 20480905 to 20480919 14 - TSS region transcription start site region 88300
Tssr88301 9 20481721 to 20481755 34 - TSS region transcription start site region 88301
Cpgi21388 9 20492481 to 20492983 502 CpG island CpG island 21388
Tssr88302 9 20492691 to 20492710 19 - TSS region transcription start site region 88302
Tssr88303 9 20492723 to 20492765 42 - TSS region transcription start site region 88303
Tssr83899 9 20492757 to 20492800 43 + TSS region transcription start site region 83899
Zfp266 9 20495068 to 20521417 26349 - protein coding gene zinc finger protein 266
Tssr88304 9 20497873 to 20497879 6 - TSS region transcription start site region 88304
Tssr88305 9 20498339 to 20498368 29 - TSS region transcription start site region 88305
Cpgi21389 9 20521009 to 20521991 982 CpG island CpG island 21389
Tssr88306 9 20521360 to 20521371 11 - TSS region transcription start site region 88306
Tssr88307 9 20521375 to 20521427 52 - TSS region transcription start site region 88307
Tssr88308 9 20521548 to 20521629 81 - TSS region transcription start site region 88308
7030419G21Rik 9 20543369 to 20545428 2059 unclassified gene RIKEN cDNA 7030419G21 gene
Cpgi21390 9 20544179 to 20545065 886 CpG island CpG island 21390
Tssr83900 9 20544608 to 20544651 43 + TSS region transcription start site region 83900
Gm46142 9 20555329 to 20555769 440 + pseudogene predicted gene, 46142
Cpgi21391 9 20581159 to 20581740 581 CpG island CpG island 21391
Tssr88309 9 20581293 to 20581306 13 - TSS region transcription start site region 88309
Tssr83901 9 20581296 to 20581333 37 + TSS region transcription start site region 83901
Zfp846 9 20581328 to 20605404 24076 + protein coding gene zinc finger protein 846
Tssr83902 9 20581345 to 20581359 14 + TSS region transcription start site region 83902
Tssr83903 9 20581424 to 20581458 34 + TSS region transcription start site region 83903
Tssr83904 9 20581507 to 20581588 81 + TSS region transcription start site region 83904
D9Mit283.2 9 20605898 to 20606039 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 283.2
Gm48069 9 20606133 to 20607616 1483 - unclassified gene predicted gene, 48069
Cpgi21392 9 20607051 to 20607911 860 CpG island CpG island 21392
Fbxl12os 9 20607475 to 20617271 9796 + antisense lncRNA gene F-box and leucine-rich repeat protein 12, opposite strand
Gm26521 9 20607766 to 20612485 4719 - lincRNA gene predicted gene, 26521
Tssr88310 9 20636370 to 20636380 10 - TSS region transcription start site region 88310
Fbxl12 9 20637749 to 20644767 7018 - protein coding gene F-box and leucine-rich repeat protein 12
Tssr88311 9 20640397 to 20640401 4 - TSS region transcription start site region 88311
Cpgi21393 9 20641912 to 20643419 1507 CpG island CpG island 21393
Tssr2788 9 20642115 to 20642120 5 + TSS region transcription start site region 2788
Tssr88312 9 20642280 to 20642322 42 - TSS region transcription start site region 88312
Tssr88313 9 20642483 to 20642506 23 - TSS region transcription start site region 88313
Tssr88314 9 20642511 to 20642536 25 - TSS region transcription start site region 88314
Tssr88315 9 20642586 to 20642606 20 - TSS region transcription start site region 88315
Tssr88316 9 20642624 to 20642637 13 - TSS region transcription start site region 88316
Tssr83905 9 20642684 to 20642698 14 + TSS region transcription start site region 83905
Tssr83906 9 20642702 to 20642712 10 + TSS region transcription start site region 83906
Tssr83907 9 20642869 to 20642898 29 + TSS region transcription start site region 83907
Tssr83908 9 20642913 to 20642942 29 + TSS region transcription start site region 83908
Tssr83909 9 20642946 to 20642960 14 + TSS region transcription start site region 83909
Tssr88317 9 20643163 to 20643196 33 - TSS region transcription start site region 88317
Tssr88318 9 20643197 to 20643215 18 - TSS region transcription start site region 88318
Tssr83910 9 20643290 to 20643342 52 + TSS region transcription start site region 83910
Ubl5 9 20643318 to 20646790 3472 + protein coding gene ubiquitin-like 5
Tssr83911 9 20643352 to 20643368 16 + TSS region transcription start site region 83911
Tssr83912 9 20643387 to 20643396 9 + TSS region transcription start site region 83912
Tssr83913 9 20643404 to 20643411 7 + TSS region transcription start site region 83913
Tssr83914 9 20643607 to 20643634 27 + TSS region transcription start site region 83914
Tssr83915 9 20644333 to 20644357 24 + TSS region transcription start site region 83915
Cpgi21394 9 20644360 to 20645481 1121 CpG island CpG island 21394
Tssr88319 9 20644726 to 20644789 63 - TSS region transcription start site region 88319
Tssr83916 9 20644792 to 20644839 47 + TSS region transcription start site region 83916
Tssr83917 9 20644846 to 20644848 2 + TSS region transcription start site region 83917
Tssr83918 9 20644851 to 20644864 13 + TSS region transcription start site region 83918
Tssr88320 9 20645276 to 20645292 16 - TSS region transcription start site region 88320
Tssr83919 9 20646658 to 20646680 22 + TSS region transcription start site region 83919
Cpgi21395 9 20651754 to 20652658 904 CpG island CpG island 21395
Tssr83920 9 20652090 to 20652104 14 + TSS region transcription start site region 83920
Tssr83921 9 20652107 to 20652138 31 + TSS region transcription start site region 83921
Pin1 9 20652130 to 20666584 14454 + protein coding gene protein (peptidyl-prolyl cis/trans isomerase) NIMA-interacting 1
Tssr83922 9 20653979 to 20653997 18 + TSS region transcription start site region 83922
Olfm2 9 20667691 to 20746307 78616 - protein coding gene olfactomedin 2
Tssr88321 9 20667853 to 20667919 66 - TSS region transcription start site region 88321
Tssr88322 9 20667924 to 20667996 72 - TSS region transcription start site region 88322
Tssr88323 9 20667999 to 20668014 15 - TSS region transcription start site region 88323
Tssr88324 9 20668044 to 20668096 52 - TSS region transcription start site region 88324
Cpgi21396 9 20668140 to 20668607 467 CpG island CpG island 21396
Cpgi21397 9 20672051 to 20672287 236 CpG island CpG island 21397
9430006E15Rik 9 20687817 to 20688833 1016 unclassified gene RIKEN cDNA 9430006E15 gene
Cpgi21398 9 20694852 to 20695152 300 CpG island CpG island 21398
Cpgi21399 9 20726275 to 20728422 2147 CpG island CpG island 21399
Tssr88325 9 20726965 to 20726984 19 - TSS region transcription start site region 88325
Tssr88326 9 20726996 to 20727012 16 - TSS region transcription start site region 88326
Gm39299 9 20738791 to 20746153 7362 + lncRNA gene predicted gene, 39299
Cpgi21400 9 20745702 to 20746594 892 CpG island CpG island 21400
Tssr88327 9 20746233 to 20746251 18 - TSS region transcription start site region 88327
Tssr88328 9 20746262 to 20746280 18 - TSS region transcription start site region 88328
Tssr88329 9 20746318 to 20746339 21 - TSS region transcription start site region 88329
Tssr88330 9 20746347 to 20746368 21 - TSS region transcription start site region 88330
Tssr88331 9 20746384 to 20746401 17 - TSS region transcription start site region 88331
Gm35860 9 20749265 to 20759126 9861 - lncRNA gene predicted gene, 35860
Col5a3 9 20770050 to 20815067 45017 - protein coding gene collagen, type V, alpha 3
Gm26274 9 20807034 to 20807354 320 + unclassified non-coding RNA gene predicted gene, 26274
Cpgi21401 9 20814852 to 20815310 458 CpG island CpG island 21401
Tssr88332 9 20814993 to 20814998 5 - TSS region transcription start site region 88332
Tssr88333 9 20815014 to 20815029 15 - TSS region transcription start site region 88333
Tssr88334 9 20815048 to 20815069 21 - TSS region transcription start site region 88334
Tssr83923 9 20818490 to 20818506 16 + TSS region transcription start site region 83923
Rdh8 9 20818503 to 20826117 7614 + protein coding gene retinol dehydrogenase 8
Cpgi21402 9 20831050 to 20831209 159 CpG island CpG island 21402
Gm39300 9 20833445 to 20853928 20483 - lncRNA gene predicted gene, 39300
Tssr83924 9 20867112 to 20867135 23 + TSS region transcription start site region 83924
Cpgi21403 9 20868361 to 20869554 1193 CpG island CpG island 21403
Tssr83925 9 20868628 to 20868706 78 + TSS region transcription start site region 83925
A230050P20Rik 9 20868642 to 20874307 5665 + protein coding gene RIKEN cDNA A230050P20 gene
Tssr83926 9 20868723 to 20868741 18 + TSS region transcription start site region 83926
Tssr83927 9 20868842 to 20868880 38 + TSS region transcription start site region 83927
Angptl6 9 20873808 to 20879727 5919 - protein coding gene angiopoietin-like 6
Cpgi21404 9 20877836 to 20878802 966 CpG island CpG island 21404
Tssr88335 9 20879695 to 20879706 11 - TSS region transcription start site region 88335
Tssr88336 9 20879718 to 20879738 20 - TSS region transcription start site region 88336
Tssr88337 9 20879742 to 20879749 7 - TSS region transcription start site region 88337
Cpgi21405 9 20887783 to 20888875 1092 CpG island CpG island 21405
Tssr88338 9 20888127 to 20888155 28 - TSS region transcription start site region 88338
Ppan 9 20888175 to 20892178 4003 + protein coding gene peter pan homolog
Tssr83928 9 20888234 to 20888239 5 + TSS region transcription start site region 83928
Tssr83929 9 20888241 to 20888283 42 + TSS region transcription start site region 83929
Tssr83930 9 20888290 to 20888295 5 + TSS region transcription start site region 83930
Tssr83931 9 20888301 to 20888312 11 + TSS region transcription start site region 83931
Gm24067 9 20889484 to 20889568 84 + snoRNA gene predicted gene, 24067
Tssr83932 9 20889824 to 20889844 20 + TSS region transcription start site region 83932
Gm23008 9 20890757 to 20890836 79 + snoRNA gene predicted gene, 23008
Eif3g 9 20894349 to 20898590 4241 - protein coding gene eukaryotic translation initiation factor 3, subunit G
Tssr83933 9 20894349 to 20894352 3 + TSS region transcription start site region 83933
Tssr88339 9 20896160 to 20896183 23 - TSS region transcription start site region 88339
Cpgi21406 9 20897815 to 20898777 962 CpG island CpG island 21406
Tssr83934 9 20897886 to 20897915 29 + TSS region transcription start site region 83934
Tssr2789 9 20898571 to 20898575 4 - TSS region transcription start site region 2789
Tssr2790 9 20898576 to 20898586 10 - TSS region transcription start site region 2790
Tssr88340 9 20898592 to 20898631 39 - TSS region transcription start site region 88340
Dnmt1 9 20907209 to 20959888 52679 - protein coding gene DNA methyltransferase (cytosine-5) 1
Mir7081 9 20914090 to 20914164 74 - miRNA gene microRNA 7081
Tssr88341 9 20925844 to 20925854 10 - TSS region transcription start site region 88341
Tssr88342 9 20938099 to 20938114 15 - TSS region transcription start site region 88342
Tssr88343 9 20941787 to 20941798 11 - TSS region transcription start site region 88343
Tssr83935 9 20945021 to 20945039 18 + TSS region transcription start site region 83935
Cpgi21407 9 20952216 to 20953115 899 CpG island CpG island 21407
Tssr88344 9 20952802 to 20952834 32 - TSS region transcription start site region 88344
Tssr88345 9 20952838 to 20952881 43 - TSS region transcription start site region 88345
Tssr2791 9 20953027 to 20953061 34 + TSS region transcription start site region 2791
Tssr88346 9 20959785 to 20959792 7 - TSS region transcription start site region 88346
S1pr2 9 20965952 to 20976793 10841 - protein coding gene sphingosine-1-phosphate receptor 2
Tssr83936 9 20972960 to 20972974 14 + TSS region transcription start site region 83936
Cpgi21408 9 20975401 to 20977079 1678 CpG island CpG island 21408
Tssr83937 9 20975912 to 20975927 15 + TSS region transcription start site region 83937
Tssr88347 9 20976671 to 20976719 48 - TSS region transcription start site region 88347
Tssr88348 9 20976721 to 20976748 27 - TSS region transcription start site region 88348
Tssr88349 9 20976762 to 20976774 12 - TSS region transcription start site region 88349
Tssr88350 9 20979306 to 20979315 9 - TSS region transcription start site region 88350
Tssr83938 9 20983529 to 20983545 16 + TSS region transcription start site region 83938
Cpgi21409 9 21002643 to 21003519 876 CpG island CpG island 21409
Mrpl4 9 21002738 to 21008839 6101 + protein coding gene mitochondrial ribosomal protein L4
Tssr83939 9 21002745 to 21002790 45 + TSS region transcription start site region 83939
Tssr83940 9 21002893 to 21002909 16 + TSS region transcription start site region 83940
Tssr83941 9 21002915 to 21002926 11 + TSS region transcription start site region 83941
Tssr83942 9 21003283 to 21003302 19 + TSS region transcription start site region 83942
Cpgi21410 9 21015314 to 21016280 966 CpG island CpG island 21410
Tssr83943 9 21015375 to 21015417 42 + TSS region transcription start site region 83943
Tssr83944 9 21015975 to 21015991 16 + TSS region transcription start site region 83944
Icam1 9 21015985 to 21028817 12832 + protein coding gene intercellular adhesion molecule 1
Tssr83945 9 21017095 to 21017102 7 + TSS region transcription start site region 83945
Tssr83946 9 21017846 to 21017857 11 + TSS region transcription start site region 83946
Tssr83947 9 21019100 to 21019111 11 + TSS region transcription start site region 83947
Tssr83948 9 21025467 to 21025476 9 + TSS region transcription start site region 83948
Tssr83949 9 21025479 to 21025511 32 + TSS region transcription start site region 83949
Tssr83950 9 21027515 to 21027526 11 + TSS region transcription start site region 83950
Tssr83951 9 21027822 to 21027836 14 + TSS region transcription start site region 83951
Tssr83952 9 21027921 to 21027938 17 + TSS region transcription start site region 83952
Tssr83953 9 21027950 to 21027964 14 + TSS region transcription start site region 83953
Tssr83954 9 21027978 to 21027991 13 + TSS region transcription start site region 83954
Tssr83955 9 21028067 to 21028085 18 + TSS region transcription start site region 83955
Tssr83956 9 21028143 to 21028155 12 + TSS region transcription start site region 83956
Tssr83957 9 21028215 to 21028228 13 + TSS region transcription start site region 83957
Tssr88351 9 21028253 to 21028284 31 - TSS region transcription start site region 88351
Tssr83958 9 21028257 to 21028285 28 + TSS region transcription start site region 83958
Tssr88352 9 21028300 to 21028311 11 - TSS region transcription start site region 88352
Gm47079 9 21028307 to 21032357 4050 - antisense lncRNA gene predicted gene, 47079
Tssr88353 9 21028384 to 21028409 25 - TSS region transcription start site region 88353
Tssr83959 9 21028457 to 21028476 19 + TSS region transcription start site region 83959
Cpgi21411 9 21029312 to 21030350 1038 CpG island CpG island 21411
Icam4 9 21029373 to 21030531 1158 + protein coding gene intercellular adhesion molecule 4, Landsteiner-Wiener blood group
Tssr83960 9 21029425 to 21029442 17 + TSS region transcription start site region 83960
Tssr83961 9 21029443 to 21029455 12 + TSS region transcription start site region 83961
Cpgi21412 9 21031141 to 21032643 1502 CpG island CpG island 21412
Tssr83962 9 21032054 to 21032085 31 + TSS region transcription start site region 83962
Icam5 9 21032073 to 21039036 6963 + protein coding gene intercellular adhesion molecule 5, telencephalin
Tssr83963 9 21032094 to 21032107 13 + TSS region transcription start site region 83963
Mir1900 9 21032251 to 21032328 77 - miRNA gene microRNA 1900