Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:16834650-21055588

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349 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm5611 9 17030045 to 17030896 851 + pseudogene predicted gene 5611
Tssr83878 9 17047229 to 17047254 25 + TSS region transcription start site region 83878
Gm39296 9 17181325 to 17356714 175389 - lncRNA gene predicted gene, 39296
Tssr83879 9 17395298 to 17395302 4 + TSS region transcription start site region 83879
Gm2594 9 17501968 to 17502709 741 - pseudogene predicted gene 2594
D9Mit295 9 17507759 to 17507860 101 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 295
Gm48846 9 17523979 to 17524245 266 + pseudogene predicted gene, 48846
Tssr88273 9 17556293 to 17556307 14 - TSS region transcription start site region 88273
Tssr88274 9 17556316 to 17556327 11 - TSS region transcription start site region 88274
Tssr83880 9 17556471 to 17556493 22 + TSS region transcription start site region 83880
Tssr88275 9 17675670 to 17675695 25 - TSS region transcription start site region 88275
Gm48848 9 17719063 to 17719173 110 + pseudogene predicted gene, 48848
Gm4977 9 17732670 to 17733931 1261 + pseudogene predicted gene 4977
Gm48849 9 17785308 to 17785787 479 - pseudogene predicted gene, 48849
Tssr83881 9 17987790 to 17987813 23 + TSS region transcription start site region 83881
Gm7680 9 18022224 to 18023571 1347 + pseudogene predicted gene 7680
Gm48850 9 18088045 to 18088356 311 + pseudogene predicted gene, 48850
Gm48856 9 18097955 to 18098280 325 + pseudogene predicted gene, 48856
Gm44498 9 18098152 to 18098262 110 - miRNA gene predicted gene, 44498
Tssr83882 9 18195053 to 18195057 4 + TSS region transcription start site region 83882
Gm7692 9 18289452 to 18289860 408 - pseudogene predicted gene 7692
Cpgi21382 9 18291915 to 18292714 799 CpG island CpG island 21382
Tssr83883 9 18292235 to 18292246 11 + TSS region transcription start site region 83883
Chordc1 9 18292267 to 18314000 21733 + protein coding gene cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1
Tssr83884 9 18292271 to 18292334 63 + TSS region transcription start site region 83884
Tssr83885 9 18292344 to 18292360 16 + TSS region transcription start site region 83885
Gm19178 9 18298833 to 18300651 1818 - pseudogene predicted gene, 19178
Tssr88276 9 18299381 to 18299400 19 - TSS region transcription start site region 88276
Tssr83886 9 18312855 to 18312873 18 + TSS region transcription start site region 83886
Naalad2 9 18321954 to 18397354 75400 - protein coding gene N-acetylated alpha-linked acidic dipeptidase 2
D9Ertd720e 9 18322010 to 18322220 210 DNA segment DNA segment, Chr 9, ERATO Doi 720, expressed
Tssr88277 9 18385955 to 18385978 23 - TSS region transcription start site region 88277
Tssr88278 9 18385981 to 18386068 87 - TSS region transcription start site region 88278
Gm19174 9 18400542 to 18402855 2313 + pseudogene predicted gene, 19174
Ubtfl1 9 18404418 to 18411502 7084 + protein coding gene upstream binding transcription factor, RNA polymerase I-like 1
Gm5612 9 18427543 to 18427917 374 + pseudogene predicted gene 5612
Mbd3l2 9 18430654 to 18446316 15662 + protein coding gene methyl-CpG binding domain protein 3-like 2
Zfp558 9 18455575 to 18478268 22693 - protein coding gene zinc finger protein 558
Gm22854 9 18460210 to 18460293 83 - miRNA gene predicted gene, 22854
Tssr88279 9 18468026 to 18468043 17 - TSS region transcription start site region 88279
Tssr88280 9 18468192 to 18468203 11 - TSS region transcription start site region 88280
Tssr88281 9 18469655 to 18469679 24 - TSS region transcription start site region 88281
Tssr88282 9 18469682 to 18469700 18 - TSS region transcription start site region 88282
Tssr88283 9 18469703 to 18469712 9 - TSS region transcription start site region 88283
Cpgi21383 9 18473328 to 18473827 499 CpG island CpG island 21383
Tssr88284 9 18473567 to 18473582 15 - TSS region transcription start site region 88284
Tssr88285 9 18473611 to 18473682 71 - TSS region transcription start site region 88285
D9Mit187 9 18478102 to 18478232 130 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 187
Tssr88286 9 18478260 to 18478304 44 - TSS region transcription start site region 88286
D9Mit187.1 9 18478307 to 18478436 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 187.1
Tssr83887 9 18478337 to 18478344 7 + TSS region transcription start site region 83887
Tssr83888 9 18478347 to 18478350 3 + TSS region transcription start site region 83888
Tssr83889 9 18478359 to 18478361 2 + TSS region transcription start site region 83889
Mbd3l1 9 18478359 to 18485298 6939 + protein coding gene methyl-CpG binding domain protein 3-like 1
Tssr83890 9 18478363 to 18478377 14 + TSS region transcription start site region 83890
Tssr83891 9 18478382 to 18478401 19 + TSS region transcription start site region 83891
Muc16 9 18495455 to 18674530 179075 - protein coding gene mucin 16
Gm25295 9 18574613 to 18574918 305 + unclassified non-coding RNA gene predicted gene, 25295
Tssr83892 9 18645190 to 18645215 25 + TSS region transcription start site region 83892
Gm39297 9 18645297 to 18690165 44868 + lncRNA gene predicted gene, 39297
Tssr88287 9 18674575 to 18674624 49 - TSS region transcription start site region 88287
Tssr88288 9 18674758 to 18674771 13 - TSS region transcription start site region 88288
Tssr88289 9 18674788 to 18674799 11 - TSS region transcription start site region 88289
Tssr88290 9 18674824 to 18674878 54 - TSS region transcription start site region 88290
Gm24546 9 18679128 to 18679229 101 + snRNA gene predicted gene, 24546
Tssr88291 9 18722072 to 18722099 27 - TSS region transcription start site region 88291
Olfr24 9 18754692 to 18755633 941 - protein coding gene olfactory receptor 24
Cpgi21384 9 18779455 to 18779867 412 CpG island CpG island 21384
Olfr828 9 18815354 to 18816292 938 - protein coding gene olfactory receptor 828
Olfr829 9 18856627 to 18857592 965 + protein coding gene olfactory receptor 829
Olfr830 9 18874960 to 18876276 1316 + protein coding gene olfactory receptor 830
Olfr831-ps1 9 18931928 to 18932969 1041 - pseudogene olfactory receptor 831, pseudogene 1
Olfr832 9 18944650 to 18945588 938 + protein coding gene olfactory receptor 832
Olfr833-ps1 9 18970007 to 18970916 909 - pseudogene olfactory receptor 833, pseudogene 1
Olfr834 9 18987990 to 18988928 938 + protein coding gene olfactory receptor 834
Gm45814 9 19029218 to 19029992 774 + pseudogene predicted gene 45814
Olfr835 9 19035125 to 19036060 935 + protein coding gene olfactory receptor 835
Tssr83893 9 19093618 to 19093649 31 + TSS region transcription start site region 83893
Olfr836 9 19120957 to 19121911 954 + protein coding gene olfactory receptor 836
Olfr837 9 19136928 to 19137967 1039 + protein coding gene olfactory receptor 837
Olfr838-ps1 9 19153629 to 19154520 891 - pseudogene olfactory receptor 838, pseudogene 1
Olfr839-ps1 9 19174721 to 19175674 953 - pseudogene olfactory receptor 839, pseudogene 1
Olfr840-ps1 9 19204883 to 19205669 786 - pseudogene olfactory receptor 840, pseudogene 1
Olfr841-ps1 9 19219092 to 19219627 535 - pseudogene olfactory receptor 841, pseudogene 1
Olfr842-ps1 9 19231861 to 19232215 354 - pseudogene olfactory receptor 842, pseudogene 1
Olfr843 9 19248357 to 19249463 1106 - protein coding gene olfactory receptor 843
Olfr844 9 19318491 to 19319465 974 + pseudogene olfactory receptor 844
Olfr845 9 19338459 to 19339400 941 + protein coding gene olfactory receptor 845
Olfr846 9 19360415 to 19361356 941 - protein coding gene olfactory receptor 846
Gm7751 9 19364855 to 19365512 657 + pseudogene predicted gene 7751
Olfr847 9 19374941 to 19378669 3728 - protein coding gene olfactory receptor 847
Olfr848-ps1 9 19403627 to 19404505 878 - pseudogene olfactory receptor 848, pseudogene 1
Gm23048 9 19437687 to 19437815 128 + snoRNA gene predicted gene, 23048
Olfr849 9 19440915 to 19441853 938 + protein coding gene olfactory receptor 849
Olfr850 9 19477301 to 19478248 947 - protein coding gene olfactory receptor 850
D9Mit62 9 19491641 to 19491796 155 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 62
Olfr851 9 19493295 to 19502815 9520 + protein coding gene olfactory receptor 851
Olfr852-ps1 9 19533644 to 19533869 225 - pseudogene olfactory receptor 852, pseudogene 1
Olfr853 9 19537011 to 19537928 917 - protein coding gene olfactory receptor 853
Olfr854 9 19566435 to 19567382 947 - protein coding gene olfactory receptor 854
Olfr855 9 19584511 to 19585502 991 + protein coding gene olfactory receptor 855
Gm45730 9 19612882 to 19613276 394 + pseudogene predicted gene 45730
Cpgi21385 9 19621980 to 19622403 423 CpG island CpG island 21385
Tssr83894 9 19622079 to 19622140 61 + TSS region transcription start site region 83894
Zfp317 9 19622102 to 19649731 27629 + protein coding gene zinc finger protein 317
Tssr83895 9 19622243 to 19622264 21 + TSS region transcription start site region 83895
Tssr83896 9 19622275 to 19622285 10 + TSS region transcription start site region 83896
Tssr83897 9 19622297 to 19622331 34 + TSS region transcription start site region 83897
Tssr83898 9 19629499 to 19629504 5 + TSS region transcription start site region 83898
Olfr856-ps1 9 19657057 to 19658647 1590 - pseudogene olfactory receptor 856, pseudogene 1
Gm7769 9 19690619 to 19691551 932 + pseudogene predicted gene 7769
Olfr857 9 19712829 to 19713758 929 + protein coding gene olfactory receptor 857
Olfr858-ps1 9 19737451 to 19738377 926 + pseudogene olfactory receptor 858, pseudogene 1
Olfr58 9 19780283 to 19784064 3781 + protein coding gene olfactory receptor 58
Olfr859 9 19808320 to 19809249 929 + protein coding gene olfactory receptor 859
Gm45699 9 19842073 to 19872536 30463 + antisense lncRNA gene predicted gene 45699
Olfr860 9 19845623 to 19849747 4124 - protein coding gene olfactory receptor 860
Olfr861-ps1 9 19875510 to 19876573 1063 + pseudogene olfactory receptor 861, pseudogene 1
Olfr862 9 19883383 to 19884303 920 - protein coding gene olfactory receptor 862
Olfr77 9 19917229 to 19922510 5281 + protein coding gene olfactory receptor 77
Gm7808 9 19927896 to 19928282 386 - pseudogene predicted pseudogene 7808
Tssr88292 9 19928320 to 19928324 4 - TSS region transcription start site region 88292
Olfr863-ps1 9 19941510 to 19942438 928 - polymorphic pseudogene olfactory receptor 863, pseudogene 1
Olfr864-ps1 9 19996433 to 19997359 926 + pseudogene olfactory receptor 864, pseudogene 1
Olfr865-ps1 9 20024684 to 20024768 84 - pseudogene olfactory receptor 865, pseudogene 1
Olfr866 9 20026959 to 20028035 1076 - protein coding gene olfactory receptor 866
Gm44395 9 20030988 to 20031140 152 - miRNA gene predicted gene, 44395
Gm26231 9 20035154 to 20035220 66 + miRNA gene predicted gene, 26231
Olfr867 9 20054466 to 20055461 995 - protein coding gene olfactory receptor 867
Olfr868 9 20098626 to 20101690 3064 + protein coding gene olfactory receptor 868
Olfr869 9 20129009 to 20138763 9754 + protein coding gene olfactory receptor 869
Olfr870 9 20170634 to 20171569 935 - protein coding gene olfactory receptor 870
Gm25914 9 20173087 to 20173239 152 + snRNA gene predicted gene, 25914
Gm26290 9 20209207 to 20209351 144 - snRNA gene predicted gene, 26290
Olfr871 9 20212207 to 20213353 1146 + protein coding gene olfactory receptor 871
Olfr872 9 20237162 to 20260913 23751 + protein coding gene olfactory receptor 872
Gm25425 9 20252793 to 20252888 95 - snRNA gene predicted gene, 25425
Olfr39 9 20282351 to 20286648 4297 + protein coding gene olfactory receptor 39
Olfr873 9 20300211 to 20301170 959 + protein coding gene olfactory receptor 873
Gm45815 9 20313488 to 20313633 145 - pseudogene predicted gene 45815
Olfr18 9 20313892 to 20336094 22202 - protein coding gene olfactory receptor 18
Zfp560 9 20345136 to 20385158 40022 - protein coding gene zinc finger protein 560
Cpgi21386 9 20384904 to 20385594 690 CpG island CpG island 21386
Tssr88293 9 20385090 to 20385146 56 - TSS region transcription start site region 88293
4921534A09Rik 9 20385234 to 20387728 2494 + unclassified gene RIKEN cDNA 4921534A09 gene
Gm29761 9 20399922 to 20401860 1938 - pseudogene predicted gene, 29761
Gm48729 9 20413175 to 20413387 212 + pseudogene predicted gene, 48729
Zfp26 9 20428449 to 20460162 31713 - protein coding gene zinc finger protein 26
Tssr88294 9 20431245 to 20431249 4 - TSS region transcription start site region 88294
Gm26733 9 20432760 to 20563282 130522 + lincRNA gene predicted gene, 26733
Tssr88295 9 20450084 to 20450087 3 - TSS region transcription start site region 88295
Tssr88296 9 20451859 to 20451862 3 - TSS region transcription start site region 88296
Gm48738 9 20456783 to 20457171 388 - pseudogene predicted gene, 48738
Cpgi21387 9 20459559 to 20460083 524 CpG island CpG island 21387
Tssr88297 9 20459950 to 20460004 54 - TSS region transcription start site region 88297
Zfp426 9 20468549 to 20492746 24197 - protein coding gene zinc finger protein 426
Gm23316 9 20477865 to 20477978 113 + snRNA gene predicted gene, 23316
Tssr88298 9 20480837 to 20480856 19 - TSS region transcription start site region 88298
Tssr88299 9 20480866 to 20480888 22 - TSS region transcription start site region 88299
Tssr88300 9 20480905 to 20480919 14 - TSS region transcription start site region 88300
Tssr88301 9 20481721 to 20481755 34 - TSS region transcription start site region 88301
Cpgi21388 9 20492481 to 20492983 502 CpG island CpG island 21388
Tssr88302 9 20492691 to 20492710 19 - TSS region transcription start site region 88302
Tssr88303 9 20492723 to 20492765 42 - TSS region transcription start site region 88303
Tssr83899 9 20492757 to 20492800 43 + TSS region transcription start site region 83899
Zfp266 9 20495068 to 20521417 26349 - protein coding gene zinc finger protein 266
Tssr88304 9 20497873 to 20497879 6 - TSS region transcription start site region 88304
Tssr88305 9 20498339 to 20498368 29 - TSS region transcription start site region 88305
Cpgi21389 9 20521009 to 20521991 982 CpG island CpG island 21389
Tssr88306 9 20521360 to 20521371 11 - TSS region transcription start site region 88306
Tssr88307 9 20521375 to 20521427 52 - TSS region transcription start site region 88307
Tssr88308 9 20521548 to 20521629 81 - TSS region transcription start site region 88308
7030419G21Rik 9 20543369 to 20545428 2059 unclassified gene RIKEN cDNA 7030419G21 gene
Cpgi21390 9 20544179 to 20545065 886 CpG island CpG island 21390
Tssr83900 9 20544608 to 20544651 43 + TSS region transcription start site region 83900
Gm46142 9 20555329 to 20555769 440 + pseudogene predicted gene, 46142
Cpgi21391 9 20581159 to 20581740 581 CpG island CpG island 21391
Tssr88309 9 20581293 to 20581306 13 - TSS region transcription start site region 88309
Tssr83901 9 20581296 to 20581333 37 + TSS region transcription start site region 83901
Zfp846 9 20581328 to 20605404 24076 + protein coding gene zinc finger protein 846
Tssr83902 9 20581345 to 20581359 14 + TSS region transcription start site region 83902
Tssr83903 9 20581424 to 20581458 34 + TSS region transcription start site region 83903
Tssr83904 9 20581507 to 20581588 81 + TSS region transcription start site region 83904
D9Mit283.2 9 20605898 to 20606039 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 283.2
Gm48069 9 20606133 to 20607616 1483 - unclassified gene predicted gene, 48069
Cpgi21392 9 20607051 to 20607911 860 CpG island CpG island 21392
Fbxl12os 9 20607475 to 20617271 9796 + antisense lncRNA gene F-box and leucine-rich repeat protein 12, opposite strand
Gm26521 9 20607766 to 20612485 4719 - lincRNA gene predicted gene, 26521
Tssr88310 9 20636370 to 20636380 10 - TSS region transcription start site region 88310
Fbxl12 9 20637749 to 20644767 7018 - protein coding gene F-box and leucine-rich repeat protein 12
Tssr88311 9 20640397 to 20640401 4 - TSS region transcription start site region 88311
Cpgi21393 9 20641912 to 20643419 1507 CpG island CpG island 21393
Tssr2788 9 20642115 to 20642120 5 + TSS region transcription start site region 2788
Tssr88312 9 20642280 to 20642322 42 - TSS region transcription start site region 88312
Tssr88313 9 20642483 to 20642506 23 - TSS region transcription start site region 88313
Tssr88314 9 20642511 to 20642536 25 - TSS region transcription start site region 88314
Tssr88315 9 20642586 to 20642606 20 - TSS region transcription start site region 88315
Tssr88316 9 20642624 to 20642637 13 - TSS region transcription start site region 88316
Tssr83905 9 20642684 to 20642698 14 + TSS region transcription start site region 83905
Tssr83906 9 20642702 to 20642712 10 + TSS region transcription start site region 83906