Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:15617759-19397860

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149 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Deup1 9 15559864 to 15627933 68069 - protein coding gene deuterosome assembly protein 1
Tssr88247 9 15619606 to 15619615 9 - TSS region transcription start site region 88247
Tssr88248 9 15619616 to 15619627 11 - TSS region transcription start site region 88248
4930540M03Rik 9 15619857 to 15641220 21363 + antisense lncRNA gene RIKEN cDNA 4930540M03 gene
Cpgi21372 9 15627721 to 15628220 499 CpG island CpG island 21372
Tssr88249 9 15627820 to 15627834 14 - TSS region transcription start site region 88249
Tssr88250 9 15627840 to 15627851 11 - TSS region transcription start site region 88250
Tssr88251 9 15627870 to 15627884 14 - TSS region transcription start site region 88251
Tssr88252 9 15627897 to 15627907 10 - TSS region transcription start site region 88252
Tssr88253 9 15627910 to 15627922 12 - TSS region transcription start site region 88253
Tssr83870 9 15627925 to 15627970 45 + TSS region transcription start site region 83870
Tssr88254 9 15628283 to 15628311 28 - TSS region transcription start site region 88254
Tssr88255 9 15628326 to 15628341 15 - TSS region transcription start site region 88255
Gm7642 9 15644283 to 15646091 1808 + pseudogene predicted gene 7642
Gm35225 9 15671211 to 15677564 6353 + lncRNA gene predicted gene, 35225
Gm5119 9 15682902 to 15683532 630 + pseudogene predicted gene 5119
Cpgi21373 9 15709267 to 15710450 1183 CpG island CpG island 21373
Tssr88256 9 15709345 to 15709357 12 - TSS region transcription start site region 88256
Slc36a4 9 15709517 to 15742408 32891 + protein coding gene solute carrier family 36 (proton/amino acid symporter), member 4
Tssr83871 9 15709715 to 15709748 33 + TSS region transcription start site region 83871
Tssr83872 9 15709750 to 15709771 21 + TSS region transcription start site region 83872
Tssr88257 9 15710201 to 15710212 11 - TSS region transcription start site region 88257
Tssr88258 9 15710213 to 15710235 22 - TSS region transcription start site region 88258
Tssr88259 9 15710251 to 15710270 19 - TSS region transcription start site region 88259
Tssr83873 9 15729351 to 15729360 9 + TSS region transcription start site region 83873
Tssr83874 9 15730840 to 15730856 16 + TSS region transcription start site region 83874
Tssr83875 9 15730857 to 15730900 43 + TSS region transcription start site region 83875
Tssr83876 9 15730921 to 15730974 53 + TSS region transcription start site region 83876
Cpgi21374 9 15823070 to 15823253 183 CpG island CpG island 21374
Gm48711 9 15823147 to 15823236 89 + pseudogene predicted gene, 48711
Mtnr1b 9 15862614 to 15874556 11942 - protein coding gene melatonin receptor 1B
Cpgi21375 9 15874171 to 15874829 658 CpG island CpG island 21375
Fat3 9 15910189 to 16501285 591096 - protein coding gene FAT atypical cadherin 3
Tssr88260 9 15914416 to 15914423 7 - TSS region transcription start site region 88260
Cpgi21376 9 15922411 to 15922812 401 CpG island CpG island 21376
Cpgi21377 9 15937899 to 15938329 430 CpG island CpG island 21377
Cpgi21378 9 15978407 to 15978618 211 CpG island CpG island 21378
Tssr88261 9 16034052 to 16034056 4 - TSS region transcription start site region 88261
Tssr83877 9 16114589 to 16114609 20 + TSS region transcription start site region 83877
Tssr88262 9 16186500 to 16186503 3 - TSS region transcription start site region 88262
D230018H15Rik 9 16236361 to 16239631 3270 unclassified gene RIKEN cDNA D230018H15 gene
Tssr88263 9 16252223 to 16252232 9 - TSS region transcription start site region 88263
Tssr88264 9 16310351 to 16310372 21 - TSS region transcription start site region 88264
Tssr88265 9 16339458 to 16339462 4 - TSS region transcription start site region 88265
Gm48726 9 16432867 to 16435395 2528 - unclassified gene predicted gene, 48726
Tssr2787 9 16442380 to 16442384 4 + TSS region transcription start site region 2787
D9Mit1002 9 16460081 to 16460220 139 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1002
Tssr88266 9 16499258 to 16499260 2 - TSS region transcription start site region 88266
Cpgi21379 9 16499995 to 16500366 371 CpG island CpG island 21379
Cpgi21380 9 16500664 to 16502800 2136 CpG island CpG island 21380
Tssr88267 9 16501985 to 16502089 104 - TSS region transcription start site region 88267
Tssr88268 9 16502170 to 16502181 11 - TSS region transcription start site region 88268
Tssr88269 9 16502195 to 16502209 14 - TSS region transcription start site region 88269
Tssr88270 9 16502222 to 16502238 16 - TSS region transcription start site region 88270
Tssr88271 9 16502430 to 16502441 11 - TSS region transcription start site region 88271
Tssr88272 9 16502493 to 16502505 12 - TSS region transcription start site region 88272
Cpgi21381 9 16548535 to 16548739 204 CpG island CpG island 21381
1700037J18Rik 9 16599379 to 16599801 422 unclassified gene RIKEN cDNA 1700037J18 gene
Gm5611 9 17030045 to 17030896 851 + pseudogene predicted gene 5611
Tssr83878 9 17047229 to 17047254 25 + TSS region transcription start site region 83878
Gm39296 9 17181325 to 17356714 175389 - lncRNA gene predicted gene, 39296
Tssr83879 9 17395298 to 17395302 4 + TSS region transcription start site region 83879
Gm2594 9 17501968 to 17502709 741 - pseudogene predicted gene 2594
D9Mit295 9 17507759 to 17507860 101 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 295
Gm48846 9 17523979 to 17524245 266 + pseudogene predicted gene, 48846
Tssr88273 9 17556293 to 17556307 14 - TSS region transcription start site region 88273
Tssr88274 9 17556316 to 17556327 11 - TSS region transcription start site region 88274
Tssr83880 9 17556471 to 17556493 22 + TSS region transcription start site region 83880
Tssr88275 9 17675670 to 17675695 25 - TSS region transcription start site region 88275
Gm48848 9 17719063 to 17719173 110 + pseudogene predicted gene, 48848
Gm4977 9 17732670 to 17733931 1261 + pseudogene predicted gene 4977
Gm48849 9 17785308 to 17785787 479 - pseudogene predicted gene, 48849
Tssr83881 9 17987790 to 17987813 23 + TSS region transcription start site region 83881
Gm7680 9 18022224 to 18023571 1347 + pseudogene predicted gene 7680
Gm48850 9 18088045 to 18088356 311 + pseudogene predicted gene, 48850
Gm48856 9 18097955 to 18098280 325 + pseudogene predicted gene, 48856
Gm44498 9 18098152 to 18098262 110 - miRNA gene predicted gene, 44498
Tssr83882 9 18195053 to 18195057 4 + TSS region transcription start site region 83882
Gm7692 9 18289452 to 18289860 408 - pseudogene predicted gene 7692
Cpgi21382 9 18291915 to 18292714 799 CpG island CpG island 21382
Tssr83883 9 18292235 to 18292246 11 + TSS region transcription start site region 83883
Chordc1 9 18292267 to 18314000 21733 + protein coding gene cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1
Tssr83884 9 18292271 to 18292334 63 + TSS region transcription start site region 83884
Tssr83885 9 18292344 to 18292360 16 + TSS region transcription start site region 83885
Gm19178 9 18298833 to 18300651 1818 - pseudogene predicted gene, 19178
Tssr88276 9 18299381 to 18299400 19 - TSS region transcription start site region 88276
Tssr83886 9 18312855 to 18312873 18 + TSS region transcription start site region 83886
Naalad2 9 18321954 to 18397354 75400 - protein coding gene N-acetylated alpha-linked acidic dipeptidase 2
D9Ertd720e 9 18322010 to 18322220 210 DNA segment DNA segment, Chr 9, ERATO Doi 720, expressed
Tssr88277 9 18385955 to 18385978 23 - TSS region transcription start site region 88277
Tssr88278 9 18385981 to 18386068 87 - TSS region transcription start site region 88278
Gm19174 9 18400542 to 18402855 2313 + pseudogene predicted gene, 19174
Ubtfl1 9 18404418 to 18411502 7084 + protein coding gene upstream binding transcription factor, RNA polymerase I-like 1
Gm5612 9 18427543 to 18427917 374 + pseudogene predicted gene 5612
Mbd3l2 9 18430654 to 18446316 15662 + protein coding gene methyl-CpG binding domain protein 3-like 2
Zfp558 9 18455575 to 18478268 22693 - protein coding gene zinc finger protein 558
Gm22854 9 18460210 to 18460293 83 - miRNA gene predicted gene, 22854
Tssr88279 9 18468026 to 18468043 17 - TSS region transcription start site region 88279
Tssr88280 9 18468192 to 18468203 11 - TSS region transcription start site region 88280
Tssr88281 9 18469655 to 18469679 24 - TSS region transcription start site region 88281
Tssr88282 9 18469682 to 18469700 18 - TSS region transcription start site region 88282
Tssr88283 9 18469703 to 18469712 9 - TSS region transcription start site region 88283
Cpgi21383 9 18473328 to 18473827 499 CpG island CpG island 21383
Tssr88284 9 18473567 to 18473582 15 - TSS region transcription start site region 88284
Tssr88285 9 18473611 to 18473682 71 - TSS region transcription start site region 88285
D9Mit187 9 18478102 to 18478232 130 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 187
Tssr88286 9 18478260 to 18478304 44 - TSS region transcription start site region 88286
D9Mit187.1 9 18478307 to 18478436 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 187.1
Tssr83887 9 18478337 to 18478344 7 + TSS region transcription start site region 83887
Tssr83888 9 18478347 to 18478350 3 + TSS region transcription start site region 83888
Tssr83889 9 18478359 to 18478361 2 + TSS region transcription start site region 83889
Mbd3l1 9 18478359 to 18485298 6939 + protein coding gene methyl-CpG binding domain protein 3-like 1
Tssr83890 9 18478363 to 18478377 14 + TSS region transcription start site region 83890
Tssr83891 9 18478382 to 18478401 19 + TSS region transcription start site region 83891
Muc16 9 18495455 to 18674530 179075 - protein coding gene mucin 16
Gm25295 9 18574613 to 18574918 305 + unclassified non-coding RNA gene predicted gene, 25295
Tssr83892 9 18645190 to 18645215 25 + TSS region transcription start site region 83892
Gm39297 9 18645297 to 18690165 44868 + lncRNA gene predicted gene, 39297
Tssr88287 9 18674575 to 18674624 49 - TSS region transcription start site region 88287
Tssr88288 9 18674758 to 18674771 13 - TSS region transcription start site region 88288
Tssr88289 9 18674788 to 18674799 11 - TSS region transcription start site region 88289
Tssr88290 9 18674824 to 18674878 54 - TSS region transcription start site region 88290
Gm24546 9 18679128 to 18679229 101 + snRNA gene predicted gene, 24546
Tssr88291 9 18722072 to 18722099 27 - TSS region transcription start site region 88291
Olfr24 9 18754692 to 18755633 941 - protein coding gene olfactory receptor 24
Cpgi21384 9 18779455 to 18779867 412 CpG island CpG island 21384
Olfr828 9 18815354 to 18816292 938 - protein coding gene olfactory receptor 828
Olfr829 9 18856627 to 18857592 965 + protein coding gene olfactory receptor 829
Olfr830 9 18874960 to 18876276 1316 + protein coding gene olfactory receptor 830
Olfr831-ps1 9 18931928 to 18932969 1041 - pseudogene olfactory receptor 831, pseudogene 1
Olfr832 9 18944650 to 18945588 938 + protein coding gene olfactory receptor 832
Olfr833-ps1 9 18970007 to 18970916 909 - pseudogene olfactory receptor 833, pseudogene 1
Olfr834 9 18987990 to 18988928 938 + protein coding gene olfactory receptor 834
Gm45814 9 19029218 to 19029992 774 + pseudogene predicted gene 45814
Olfr835 9 19035125 to 19036060 935 + protein coding gene olfactory receptor 835
Tssr83893 9 19093618 to 19093649 31 + TSS region transcription start site region 83893
Olfr836 9 19120957 to 19121911 954 + protein coding gene olfactory receptor 836
Olfr837 9 19136928 to 19137967 1039 + protein coding gene olfactory receptor 837
Olfr838-ps1 9 19153629 to 19154520 891 - pseudogene olfactory receptor 838, pseudogene 1
Olfr839-ps1 9 19174721 to 19175674 953 - pseudogene olfactory receptor 839, pseudogene 1
Olfr840-ps1 9 19204883 to 19205669 786 - pseudogene olfactory receptor 840, pseudogene 1
Olfr841-ps1 9 19219092 to 19219627 535 - pseudogene olfactory receptor 841, pseudogene 1
Olfr842-ps1 9 19231861 to 19232215 354 - pseudogene olfactory receptor 842, pseudogene 1
Olfr843 9 19248357 to 19249463 1106 - protein coding gene olfactory receptor 843
Olfr844 9 19318491 to 19319465 974 + pseudogene olfactory receptor 844
Olfr845 9 19338459 to 19339400 941 + protein coding gene olfactory receptor 845
Olfr846 9 19360415 to 19361356 941 - protein coding gene olfactory receptor 846
Gm7751 9 19364855 to 19365512 657 + pseudogene predicted gene 7751
Olfr847 9 19374941 to 19378669 3728 - protein coding gene olfactory receptor 847