Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:15444589-16784609

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39294 9 15432188 to 15452119 19931 + lncRNA gene predicted gene, 39294
Gm35176 9 15475048 to 15479672 4624 + lncRNA gene predicted gene, 35176
Cpgi21371 9 15493060 to 15494446 1386 CpG island CpG island 21371
Smco4 9 15493432 to 15545260 51828 + protein coding gene single-pass membrane protein with coiled-coil domains 4
Tssr83867 9 15493525 to 15493607 82 + TSS region transcription start site region 83867
Tssr88246 9 15494173 to 15494190 17 - TSS region transcription start site region 88246
D9Mit60 9 15503086 to 15503295 209 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 60
Tssr83868 9 15520830 to 15520834 4 + TSS region transcription start site region 83868
Tssr83869 9 15538776 to 15538823 47 + TSS region transcription start site region 83869
Gm46152 9 15538810 to 15543578 4768 + lncRNA gene predicted gene, 46152
Deup1 9 15559864 to 15627933 68069 - protein coding gene deuterosome assembly protein 1
Gm39295 9 15614382 to 15615169 787 + lncRNA gene predicted gene, 39295
Tssr88247 9 15619606 to 15619615 9 - TSS region transcription start site region 88247
Tssr88248 9 15619616 to 15619627 11 - TSS region transcription start site region 88248
4930540M03Rik 9 15619857 to 15641220 21363 + antisense lncRNA gene RIKEN cDNA 4930540M03 gene
Cpgi21372 9 15627721 to 15628220 499 CpG island CpG island 21372
Tssr88249 9 15627820 to 15627834 14 - TSS region transcription start site region 88249
Tssr88250 9 15627840 to 15627851 11 - TSS region transcription start site region 88250
Tssr88251 9 15627870 to 15627884 14 - TSS region transcription start site region 88251
Tssr88252 9 15627897 to 15627907 10 - TSS region transcription start site region 88252
Tssr88253 9 15627910 to 15627922 12 - TSS region transcription start site region 88253
Tssr83870 9 15627925 to 15627970 45 + TSS region transcription start site region 83870
Tssr88254 9 15628283 to 15628311 28 - TSS region transcription start site region 88254
Tssr88255 9 15628326 to 15628341 15 - TSS region transcription start site region 88255
Gm7642 9 15644283 to 15646091 1808 + pseudogene predicted gene 7642
Gm35225 9 15671211 to 15677564 6353 + lncRNA gene predicted gene, 35225
Gm5119 9 15682902 to 15683532 630 + pseudogene predicted gene 5119
Cpgi21373 9 15709267 to 15710450 1183 CpG island CpG island 21373
Tssr88256 9 15709345 to 15709357 12 - TSS region transcription start site region 88256
Slc36a4 9 15709517 to 15742408 32891 + protein coding gene solute carrier family 36 (proton/amino acid symporter), member 4
Tssr83871 9 15709715 to 15709748 33 + TSS region transcription start site region 83871
Tssr83872 9 15709750 to 15709771 21 + TSS region transcription start site region 83872
Tssr88257 9 15710201 to 15710212 11 - TSS region transcription start site region 88257
Tssr88258 9 15710213 to 15710235 22 - TSS region transcription start site region 88258
Tssr88259 9 15710251 to 15710270 19 - TSS region transcription start site region 88259
Tssr83873 9 15729351 to 15729360 9 + TSS region transcription start site region 83873
Tssr83874 9 15730840 to 15730856 16 + TSS region transcription start site region 83874
Tssr83875 9 15730857 to 15730900 43 + TSS region transcription start site region 83875
Tssr83876 9 15730921 to 15730974 53 + TSS region transcription start site region 83876
Cpgi21374 9 15823070 to 15823253 183 CpG island CpG island 21374
Gm48711 9 15823147 to 15823236 89 + pseudogene predicted gene, 48711
Mtnr1b 9 15862614 to 15874556 11942 - protein coding gene melatonin receptor 1B
Cpgi21375 9 15874171 to 15874829 658 CpG island CpG island 21375
Fat3 9 15910189 to 16501285 591096 - protein coding gene FAT atypical cadherin 3
Tssr88260 9 15914416 to 15914423 7 - TSS region transcription start site region 88260
Cpgi21376 9 15922411 to 15922812 401 CpG island CpG island 21376
Cpgi21377 9 15937899 to 15938329 430 CpG island CpG island 21377
Cpgi21378 9 15978407 to 15978618 211 CpG island CpG island 21378
Tssr88261 9 16034052 to 16034056 4 - TSS region transcription start site region 88261
Tssr83877 9 16114589 to 16114609 20 + TSS region transcription start site region 83877
Tssr88262 9 16186500 to 16186503 3 - TSS region transcription start site region 88262
D230018H15Rik 9 16236361 to 16239631 3270 unclassified gene RIKEN cDNA D230018H15 gene
Tssr88263 9 16252223 to 16252232 9 - TSS region transcription start site region 88263
Tssr88264 9 16310351 to 16310372 21 - TSS region transcription start site region 88264
Tssr88265 9 16339458 to 16339462 4 - TSS region transcription start site region 88265
Gm48726 9 16432867 to 16435395 2528 - unclassified gene predicted gene, 48726
Tssr2787 9 16442380 to 16442384 4 + TSS region transcription start site region 2787
D9Mit1002 9 16460081 to 16460220 139 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1002
Tssr88266 9 16499258 to 16499260 2 - TSS region transcription start site region 88266
Cpgi21379 9 16499995 to 16500366 371 CpG island CpG island 21379
Cpgi21380 9 16500664 to 16502800 2136 CpG island CpG island 21380
Tssr88267 9 16501985 to 16502089 104 - TSS region transcription start site region 88267
Tssr88268 9 16502170 to 16502181 11 - TSS region transcription start site region 88268
Tssr88269 9 16502195 to 16502209 14 - TSS region transcription start site region 88269
Tssr88270 9 16502222 to 16502238 16 - TSS region transcription start site region 88270
Tssr88271 9 16502430 to 16502441 11 - TSS region transcription start site region 88271
Tssr88272 9 16502493 to 16502505 12 - TSS region transcription start site region 88272
Cpgi21381 9 16548535 to 16548739 204 CpG island CpG island 21381
1700037J18Rik 9 16599379 to 16599801 422 unclassified gene RIKEN cDNA 1700037J18 gene