Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:15325048-15629672

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cep295 9 15316915 to 15357788 40873 - protein coding gene centrosomal protein 295
Scarna9 9 15326289 to 15326330 41 - snoRNA gene small Cajal body-specific RNA 9
Gm24339 9 15326464 to 15326539 75 - snoRNA gene predicted gene, 24339
Tssr88242 9 15326535 to 15326559 24 - TSS region transcription start site region 88242
Gm16568 9 15330573 to 15335345 4772 + antisense lncRNA gene predicted gene 16568
Cpgi21370 9 15357267 to 15358125 858 CpG island CpG island 21370
Tssr88243 9 15357663 to 15357674 11 - TSS region transcription start site region 88243
Tssr88244 9 15357692 to 15357759 67 - TSS region transcription start site region 88244
Tssr88245 9 15357817 to 15357829 12 - TSS region transcription start site region 88245
Gm34973 9 15381367 to 15387425 6058 + lincRNA gene predicted gene, 34973
D9Mit1 9 15386545 to 15386653 108 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1
Gm2517 9 15424267 to 15424614 347 - pseudogene predicted gene 2517
Tssr83866 9 15432164 to 15432175 11 + TSS region transcription start site region 83866
Gm39294 9 15432188 to 15452119 19931 + lncRNA gene predicted gene, 39294
Gm48634 9 15439995 to 15440471 476 - pseudogene predicted gene, 48634
Gm35176 9 15475048 to 15479672 4624 + lncRNA gene predicted gene, 35176
Cpgi21371 9 15493060 to 15494446 1386 CpG island CpG island 21371
Smco4 9 15493432 to 15545260 51828 + protein coding gene single-pass membrane protein with coiled-coil domains 4
Tssr83867 9 15493525 to 15493607 82 + TSS region transcription start site region 83867
Tssr88246 9 15494173 to 15494190 17 - TSS region transcription start site region 88246
D9Mit60 9 15503086 to 15503295 209 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 60
Tssr83868 9 15520830 to 15520834 4 + TSS region transcription start site region 83868
Tssr83869 9 15538776 to 15538823 47 + TSS region transcription start site region 83869
Gm46152 9 15538810 to 15543578 4768 + lncRNA gene predicted gene, 46152
Deup1 9 15559864 to 15627933 68069 - protein coding gene deuterosome assembly protein 1
Gm39295 9 15614382 to 15615169 787 + lncRNA gene predicted gene, 39295
Tssr88247 9 15619606 to 15619615 9 - TSS region transcription start site region 88247
Tssr88248 9 15619616 to 15619627 11 - TSS region transcription start site region 88248
4930540M03Rik 9 15619857 to 15641220 21363 + antisense lncRNA gene RIKEN cDNA 4930540M03 gene
Cpgi21372 9 15627721 to 15628220 499 CpG island CpG island 21372
Tssr88249 9 15627820 to 15627834 14 - TSS region transcription start site region 88249
Tssr88250 9 15627840 to 15627851 11 - TSS region transcription start site region 88250
Tssr88251 9 15627870 to 15627884 14 - TSS region transcription start site region 88251
Tssr88252 9 15627897 to 15627907 10 - TSS region transcription start site region 88252
Tssr88253 9 15627910 to 15627922 12 - TSS region transcription start site region 88253
Tssr83870 9 15627925 to 15627970 45 + TSS region transcription start site region 83870
Tssr88254 9 15628283 to 15628311 28 - TSS region transcription start site region 88254
Tssr88255 9 15628326 to 15628341 15 - TSS region transcription start site region 88255