Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:15225048-15729672

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm39293 9 15226918 to 15233358 6440 - lncRNA gene predicted gene, 39293
Cpgi21366 9 15238516 to 15239615 1099 CpG island CpG island 21366
Vstm5 9 15239045 to 15259416 20371 + protein coding gene V-set and transmembrane domain containing 5
Tssr83859 9 15239066 to 15239155 89 + TSS region transcription start site region 83859
Med17 9 15260351 to 15279931 19580 - protein coding gene mediator complex subunit 17
Tssr88230 9 15278789 to 15278793 4 - TSS region transcription start site region 88230
Tssr88231 9 15279361 to 15279366 5 - TSS region transcription start site region 88231
Cpgi21367 9 15279407 to 15280278 871 CpG island CpG island 21367
Tssr88232 9 15279847 to 15279856 9 - TSS region transcription start site region 88232
Tssr88233 9 15279860 to 15279877 17 - TSS region transcription start site region 88233
Tssr88234 9 15279888 to 15279919 31 - TSS region transcription start site region 88234
Tssr2786 9 15279922 to 15279927 5 - TSS region transcription start site region 2786
4931406C07Rik 9 15283337 to 15306448 23111 - protein coding gene RIKEN cDNA 4931406C07 gene
Tssr88235 9 15284643 to 15284658 15 - TSS region transcription start site region 88235
Tssr88236 9 15288048 to 15288081 33 - TSS region transcription start site region 88236
Tssr88237 9 15301449 to 15301549 100 - TSS region transcription start site region 88237
Tssr88238 9 15301555 to 15301571 16 - TSS region transcription start site region 88238
Tssr88239 9 15301676 to 15301683 7 - TSS region transcription start site region 88239
Cpgi21368 9 15305747 to 15306781 1034 CpG island CpG island 21368
Tssr88240 9 15306095 to 15306114 19 - TSS region transcription start site region 88240
Tssr88241 9 15306116 to 15306159 43 - TSS region transcription start site region 88241
Tssr83860 9 15306212 to 15306219 7 + TSS region transcription start site region 83860
Taf1d 9 15306214 to 15316991 10777 + protein coding gene TATA-box binding protein associated factor, RNA polymerase I, D
Tssr83861 9 15306221 to 15306240 19 + TSS region transcription start site region 83861
Tssr83862 9 15306252 to 15306268 16 + TSS region transcription start site region 83862
Tssr83863 9 15311163 to 15311167 4 + TSS region transcription start site region 83863
Mir7650 9 15312611 to 15312669 58 + miRNA gene microRNA 7650
Gm25500 9 15312611 to 15312669 58 + snoRNA gene predicted gene, 25500
Tssr83864 9 15313802 to 15313824 22 + TSS region transcription start site region 83864
Gm24455 9 15313802 to 15313932 130 + snoRNA gene predicted gene, 24455
Gm24299 9 15314074 to 15314144 70 + snoRNA gene predicted gene, 24299
Gm49349 9 15314842 to 15314908 66 + miRNA gene predicted gene, 49349
Gm25791 9 15314845 to 15314981 136 + snoRNA gene predicted gene, 25791
Gm22620 9 15315189 to 15315321 132 + snoRNA gene predicted gene, 22620
Tssr83865 9 15315520 to 15315536 16 + TSS region transcription start site region 83865
Gm24357 9 15315522 to 15315595 73 + snoRNA gene predicted gene, 24357
Gm23455 9 15316489 to 15316588 99 + snoRNA gene predicted gene, 23455
Gm22579 9 15316676 to 15316808 132 + snoRNA gene predicted gene, 22579
Cep295 9 15316915 to 15357788 40873 - protein coding gene centrosomal protein 295
Gm48142 9 15320733 to 15321277 544 + pseudogene predicted gene, 48142
Gm48141 9 15321605 to 15322316 711 + pseudogene predicted gene, 48141
Scarna9 9 15326289 to 15326330 41 - snoRNA gene small Cajal body-specific RNA 9
Gm24339 9 15326464 to 15326539 75 - snoRNA gene predicted gene, 24339
Tssr88242 9 15326535 to 15326559 24 - TSS region transcription start site region 88242
Gm16568 9 15330573 to 15335345 4772 + antisense lncRNA gene predicted gene 16568
Cpgi21370 9 15357267 to 15358125 858 CpG island CpG island 21370
Tssr88243 9 15357663 to 15357674 11 - TSS region transcription start site region 88243
Tssr88244 9 15357692 to 15357759 67 - TSS region transcription start site region 88244
Tssr88245 9 15357817 to 15357829 12 - TSS region transcription start site region 88245
Gm34973 9 15381367 to 15387425 6058 + lincRNA gene predicted gene, 34973
D9Mit1 9 15386545 to 15386653 108 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1
Gm2517 9 15424267 to 15424614 347 - pseudogene predicted gene 2517
Tssr83866 9 15432164 to 15432175 11 + TSS region transcription start site region 83866
Gm39294 9 15432188 to 15452119 19931 + lncRNA gene predicted gene, 39294
Gm48634 9 15439995 to 15440471 476 - pseudogene predicted gene, 48634
Gm35176 9 15475048 to 15479672 4624 + lncRNA gene predicted gene, 35176
Cpgi21371 9 15493060 to 15494446 1386 CpG island CpG island 21371
Smco4 9 15493432 to 15545260 51828 + protein coding gene single-pass membrane protein with coiled-coil domains 4
Tssr83867 9 15493525 to 15493607 82 + TSS region transcription start site region 83867
Tssr88246 9 15494173 to 15494190 17 - TSS region transcription start site region 88246
D9Mit60 9 15503086 to 15503295 209 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 60
Tssr83868 9 15520830 to 15520834 4 + TSS region transcription start site region 83868
Tssr83869 9 15538776 to 15538823 47 + TSS region transcription start site region 83869
Gm46152 9 15538810 to 15543578 4768 + lncRNA gene predicted gene, 46152
Deup1 9 15559864 to 15627933 68069 - protein coding gene deuterosome assembly protein 1
Gm39295 9 15614382 to 15615169 787 + lncRNA gene predicted gene, 39295
Tssr88247 9 15619606 to 15619615 9 - TSS region transcription start site region 88247
Tssr88248 9 15619616 to 15619627 11 - TSS region transcription start site region 88248
4930540M03Rik 9 15619857 to 15641220 21363 + antisense lncRNA gene RIKEN cDNA 4930540M03 gene
Cpgi21372 9 15627721 to 15628220 499 CpG island CpG island 21372
Tssr88249 9 15627820 to 15627834 14 - TSS region transcription start site region 88249
Tssr88250 9 15627840 to 15627851 11 - TSS region transcription start site region 88250
Tssr88251 9 15627870 to 15627884 14 - TSS region transcription start site region 88251
Tssr88252 9 15627897 to 15627907 10 - TSS region transcription start site region 88252
Tssr88253 9 15627910 to 15627922 12 - TSS region transcription start site region 88253
Tssr83870 9 15627925 to 15627970 45 + TSS region transcription start site region 83870
Tssr88254 9 15628283 to 15628311 28 - TSS region transcription start site region 88254
Tssr88255 9 15628326 to 15628341 15 - TSS region transcription start site region 88255
Gm7642 9 15644283 to 15646091 1808 + pseudogene predicted gene 7642
Gm35225 9 15671211 to 15677564 6353 + lncRNA gene predicted gene, 35225
Gm5119 9 15682902 to 15683532 630 + pseudogene predicted gene 5119
Cpgi21373 9 15709267 to 15710450 1183 CpG island CpG island 21373
Tssr88256 9 15709345 to 15709357 12 - TSS region transcription start site region 88256
Slc36a4 9 15709517 to 15742408 32891 + protein coding gene solute carrier family 36 (proton/amino acid symporter), member 4
Tssr83871 9 15709715 to 15709748 33 + TSS region transcription start site region 83871
Tssr83872 9 15709750 to 15709771 21 + TSS region transcription start site region 83872
Tssr88257 9 15710201 to 15710212 11 - TSS region transcription start site region 88257
Tssr88258 9 15710213 to 15710235 22 - TSS region transcription start site region 88258
Tssr88259 9 15710251 to 15710270 19 - TSS region transcription start site region 88259
Tssr83873 9 15729351 to 15729360 9 + TSS region transcription start site region 83873