Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:14789589-17439609

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178 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mre11a 9 14784654 to 14837123 52469 + protein coding gene MRE11A homolog A, double strand break repair nuclease
Gm47154 9 14807774 to 14808040 266 - pseudogene predicted gene, 47154
Tssr83848 9 14810665 to 14810670 5 + TSS region transcription start site region 83848
Gm16379 9 14845365 to 14845712 347 - pseudogene predicted pseudogene 16379
Gm16302 9 14845613 to 14847835 2222 + lincRNA gene predicted gene 16302
Tssr83849 9 14858470 to 14858478 8 + TSS region transcription start site region 83849
Cpgi21364 9 14859802 to 14860865 1063 CpG island CpG island 21364
Tssr88207 9 14860077 to 14860105 28 - TSS region transcription start site region 88207
Gpr83 9 14860210 to 14870789 10579 + protein coding gene G protein-coupled receptor 83
Tssr83850 9 14860232 to 14860246 14 + TSS region transcription start site region 83850
Izumo1r 9 14885814 to 14903949 18135 - protein coding gene IZUMO1 receptor, JUNO
Tssr83851 9 14900520 to 14900545 25 + TSS region transcription start site region 83851
Tssr88208 9 14900795 to 14900843 48 - TSS region transcription start site region 88208
Tssr88209 9 14901902 to 14901911 9 - TSS region transcription start site region 88209
Tssr88210 9 14902524 to 14902559 35 - TSS region transcription start site region 88210
Tssr88211 9 14902560 to 14902571 11 - TSS region transcription start site region 88211
Tssr83852 9 14902672 to 14902692 20 + TSS region transcription start site region 83852
Tssr88212 9 14903052 to 14903067 15 - TSS region transcription start site region 88212
Tssr83853 9 14903195 to 14903204 9 + TSS region transcription start site region 83853
Tssr83854 9 14903494 to 14903501 7 + TSS region transcription start site region 83854
Tssr83855 9 14903507 to 14903520 13 + TSS region transcription start site region 83855
Tssr88213 9 14903752 to 14903772 20 - TSS region transcription start site region 88213
Tssr2785 9 14903783 to 14903786 3 - TSS region transcription start site region 2785
Tssr88214 9 14903808 to 14903815 7 - TSS region transcription start site region 88214
Tssr88215 9 14903851 to 14903854 3 - TSS region transcription start site region 88215
Tssr88216 9 14903866 to 14903882 16 - TSS region transcription start site region 88216
Tssr88217 9 14903890 to 14903897 7 - TSS region transcription start site region 88217
Tssr88218 9 14903910 to 14903921 11 - TSS region transcription start site region 88218
Tssr88219 9 14903938 to 14903948 10 - TSS region transcription start site region 88219
Tssr88220 9 14903962 to 14903971 9 - TSS region transcription start site region 88220
Tssr88221 9 14903990 to 14904000 10 - TSS region transcription start site region 88221
Tssr88222 9 14904723 to 14904734 11 - TSS region transcription start site region 88222
Gm18789 9 14915472 to 14916021 549 - pseudogene predicted gene, 18789
Gm47214 9 14949463 to 14977583 28120 + lincRNA gene predicted gene, 47214
n-TKctt4 9 14958433 to 14958505 72 - tRNA gene nuclear encoded tRNA lysine 4 (anticodon CTT)
Panx1 9 15005785 to 15045478 39693 - protein coding gene pannexin 1
Tssr88223 9 15007836 to 15007871 35 - TSS region transcription start site region 88223
Tssr88224 9 15007894 to 15007901 7 - TSS region transcription start site region 88224
Cpgi21365 9 15044576 to 15045766 1190 CpG island CpG island 21365
Tssr88225 9 15045106 to 15045135 29 - TSS region transcription start site region 88225
Tssr88226 9 15045145 to 15045156 11 - TSS region transcription start site region 88226
Tssr88227 9 15045378 to 15045502 124 - TSS region transcription start site region 88227
Tssr83856 9 15045581 to 15045593 12 + TSS region transcription start site region 83856
Hephl1 9 15051841 to 15112108 60267 - protein coding gene hephaestin-like 1
Tssr88228 9 15112100 to 15112119 19 - TSS region transcription start site region 88228
Tssr88229 9 15112145 to 15112157 12 - TSS region transcription start site region 88229
D9Mit220 9 15147858 to 15147976 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 220
Tssr83857 9 15207108 to 15207109 1 + TSS region transcription start site region 83857
Tssr83858 9 15208434 to 15208440 6 + TSS region transcription start site region 83858
Gm22658 9 15211631 to 15211785 154 - snRNA gene predicted gene, 22658
D9Dcr137 9 15215513 to 15215608 95 DNA segment DNA Segment, Chr 9, Derry C. Roopenian 137
Gm39293 9 15226918 to 15233358 6440 - lncRNA gene predicted gene, 39293
Cpgi21366 9 15238516 to 15239615 1099 CpG island CpG island 21366
Vstm5 9 15239045 to 15259416 20371 + protein coding gene V-set and transmembrane domain containing 5
Tssr83859 9 15239066 to 15239155 89 + TSS region transcription start site region 83859
Med17 9 15260351 to 15279931 19580 - protein coding gene mediator complex subunit 17
Tssr88230 9 15278789 to 15278793 4 - TSS region transcription start site region 88230
Tssr88231 9 15279361 to 15279366 5 - TSS region transcription start site region 88231
Cpgi21367 9 15279407 to 15280278 871 CpG island CpG island 21367
Tssr88232 9 15279847 to 15279856 9 - TSS region transcription start site region 88232
Tssr88233 9 15279860 to 15279877 17 - TSS region transcription start site region 88233
Tssr88234 9 15279888 to 15279919 31 - TSS region transcription start site region 88234
Tssr2786 9 15279922 to 15279927 5 - TSS region transcription start site region 2786
4931406C07Rik 9 15283337 to 15306448 23111 - protein coding gene RIKEN cDNA 4931406C07 gene
Tssr88235 9 15284643 to 15284658 15 - TSS region transcription start site region 88235
Tssr88236 9 15288048 to 15288081 33 - TSS region transcription start site region 88236
Tssr88237 9 15301449 to 15301549 100 - TSS region transcription start site region 88237
Tssr88238 9 15301555 to 15301571 16 - TSS region transcription start site region 88238
Tssr88239 9 15301676 to 15301683 7 - TSS region transcription start site region 88239
Cpgi21368 9 15305747 to 15306781 1034 CpG island CpG island 21368
Tssr88240 9 15306095 to 15306114 19 - TSS region transcription start site region 88240
Tssr88241 9 15306116 to 15306159 43 - TSS region transcription start site region 88241
Tssr83860 9 15306212 to 15306219 7 + TSS region transcription start site region 83860
Taf1d 9 15306214 to 15316991 10777 + protein coding gene TATA-box binding protein associated factor, RNA polymerase I, D
Tssr83861 9 15306221 to 15306240 19 + TSS region transcription start site region 83861
Tssr83862 9 15306252 to 15306268 16 + TSS region transcription start site region 83862
Tssr83863 9 15311163 to 15311167 4 + TSS region transcription start site region 83863
Gm25500 9 15312611 to 15312669 58 + snoRNA gene predicted gene, 25500
Mir7650 9 15312611 to 15312669 58 + miRNA gene microRNA 7650
Gm24455 9 15313802 to 15313932 130 + snoRNA gene predicted gene, 24455
Tssr83864 9 15313802 to 15313824 22 + TSS region transcription start site region 83864
Gm24299 9 15314074 to 15314144 70 + snoRNA gene predicted gene, 24299
Gm49349 9 15314842 to 15314908 66 + miRNA gene predicted gene, 49349
Gm25791 9 15314845 to 15314981 136 + snoRNA gene predicted gene, 25791
Gm22620 9 15315189 to 15315321 132 + snoRNA gene predicted gene, 22620
Tssr83865 9 15315520 to 15315536 16 + TSS region transcription start site region 83865
Gm24357 9 15315522 to 15315595 73 + snoRNA gene predicted gene, 24357
Gm23455 9 15316489 to 15316588 99 + snoRNA gene predicted gene, 23455
Gm22579 9 15316676 to 15316808 132 + snoRNA gene predicted gene, 22579
Cep295 9 15316915 to 15357788 40873 - protein coding gene centrosomal protein 295
Gm48142 9 15320733 to 15321277 544 + pseudogene predicted gene, 48142
Gm48141 9 15321605 to 15322316 711 + pseudogene predicted gene, 48141
Scarna9 9 15326289 to 15326330 41 - snoRNA gene small Cajal body-specific RNA 9
Gm24339 9 15326464 to 15326539 75 - snoRNA gene predicted gene, 24339
Tssr88242 9 15326535 to 15326559 24 - TSS region transcription start site region 88242
Gm16568 9 15330573 to 15335345 4772 + antisense lncRNA gene predicted gene 16568
Cpgi21370 9 15357267 to 15358125 858 CpG island CpG island 21370
Tssr88243 9 15357663 to 15357674 11 - TSS region transcription start site region 88243
Tssr88244 9 15357692 to 15357759 67 - TSS region transcription start site region 88244
Tssr88245 9 15357817 to 15357829 12 - TSS region transcription start site region 88245
Gm34973 9 15381367 to 15387425 6058 + lincRNA gene predicted gene, 34973
D9Mit1 9 15386545 to 15386653 108 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1
Gm2517 9 15424267 to 15424614 347 - pseudogene predicted gene 2517
Tssr83866 9 15432164 to 15432175 11 + TSS region transcription start site region 83866
Gm39294 9 15432188 to 15452119 19931 + lncRNA gene predicted gene, 39294
Gm48634 9 15439995 to 15440471 476 - pseudogene predicted gene, 48634
Gm35176 9 15475048 to 15479672 4624 + lncRNA gene predicted gene, 35176
Cpgi21371 9 15493060 to 15494446 1386 CpG island CpG island 21371
Smco4 9 15493432 to 15545260 51828 + protein coding gene single-pass membrane protein with coiled-coil domains 4
Tssr83867 9 15493525 to 15493607 82 + TSS region transcription start site region 83867
Tssr88246 9 15494173 to 15494190 17 - TSS region transcription start site region 88246
D9Mit60 9 15503086 to 15503295 209 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 60
Tssr83868 9 15520830 to 15520834 4 + TSS region transcription start site region 83868
Tssr83869 9 15538776 to 15538823 47 + TSS region transcription start site region 83869
Gm46152 9 15538810 to 15543578 4768 + lncRNA gene predicted gene, 46152
Deup1 9 15559864 to 15627933 68069 - protein coding gene deuterosome assembly protein 1
Gm39295 9 15614382 to 15615169 787 + lncRNA gene predicted gene, 39295
Tssr88247 9 15619606 to 15619615 9 - TSS region transcription start site region 88247
Tssr88248 9 15619616 to 15619627 11 - TSS region transcription start site region 88248
4930540M03Rik 9 15619857 to 15641220 21363 + antisense lncRNA gene RIKEN cDNA 4930540M03 gene
Cpgi21372 9 15627721 to 15628220 499 CpG island CpG island 21372
Tssr88249 9 15627820 to 15627834 14 - TSS region transcription start site region 88249
Tssr88250 9 15627840 to 15627851 11 - TSS region transcription start site region 88250
Tssr88251 9 15627870 to 15627884 14 - TSS region transcription start site region 88251
Tssr88252 9 15627897 to 15627907 10 - TSS region transcription start site region 88252
Tssr88253 9 15627910 to 15627922 12 - TSS region transcription start site region 88253
Tssr83870 9 15627925 to 15627970 45 + TSS region transcription start site region 83870
Tssr88254 9 15628283 to 15628311 28 - TSS region transcription start site region 88254
Tssr88255 9 15628326 to 15628341 15 - TSS region transcription start site region 88255
Gm7642 9 15644283 to 15646091 1808 + pseudogene predicted gene 7642
Gm35225 9 15671211 to 15677564 6353 + lncRNA gene predicted gene, 35225
Gm5119 9 15682902 to 15683532 630 + pseudogene predicted gene 5119
Cpgi21373 9 15709267 to 15710450 1183 CpG island CpG island 21373
Tssr88256 9 15709345 to 15709357 12 - TSS region transcription start site region 88256
Slc36a4 9 15709517 to 15742408 32891 + protein coding gene solute carrier family 36 (proton/amino acid symporter), member 4
Tssr83871 9 15709715 to 15709748 33 + TSS region transcription start site region 83871
Tssr83872 9 15709750 to 15709771 21 + TSS region transcription start site region 83872
Tssr88257 9 15710201 to 15710212 11 - TSS region transcription start site region 88257
Tssr88258 9 15710213 to 15710235 22 - TSS region transcription start site region 88258
Tssr88259 9 15710251 to 15710270 19 - TSS region transcription start site region 88259
Tssr83873 9 15729351 to 15729360 9 + TSS region transcription start site region 83873
Tssr83874 9 15730840 to 15730856 16 + TSS region transcription start site region 83874
Tssr83875 9 15730857 to 15730900 43 + TSS region transcription start site region 83875
Tssr83876 9 15730921 to 15730974 53 + TSS region transcription start site region 83876
Cpgi21374 9 15823070 to 15823253 183 CpG island CpG island 21374
Gm48711 9 15823147 to 15823236 89 + pseudogene predicted gene, 48711
Mtnr1b 9 15862614 to 15874556 11942 - protein coding gene melatonin receptor 1B
Cpgi21375 9 15874171 to 15874829 658 CpG island CpG island 21375
Fat3 9 15910189 to 16501285 591096 - protein coding gene FAT atypical cadherin 3
Tssr88260 9 15914416 to 15914423 7 - TSS region transcription start site region 88260
Cpgi21376 9 15922411 to 15922812 401 CpG island CpG island 21376
Cpgi21377 9 15937899 to 15938329 430 CpG island CpG island 21377
Cpgi21378 9 15978407 to 15978618 211 CpG island CpG island 21378
Tssr88261 9 16034052 to 16034056 4 - TSS region transcription start site region 88261
Tssr83877 9 16114589 to 16114609 20 + TSS region transcription start site region 83877
Tssr88262 9 16186500 to 16186503 3 - TSS region transcription start site region 88262
D230018H15Rik 9 16236361 to 16239631 3270 unclassified gene RIKEN cDNA D230018H15 gene
Tssr88263 9 16252223 to 16252232 9 - TSS region transcription start site region 88263
Tssr88264 9 16310351 to 16310372 21 - TSS region transcription start site region 88264
Tssr88265 9 16339458 to 16339462 4 - TSS region transcription start site region 88265
Gm48726 9 16432867 to 16435395 2528 - unclassified gene predicted gene, 48726
Tssr2787 9 16442380 to 16442384 4 + TSS region transcription start site region 2787
D9Mit1002 9 16460081 to 16460220 139 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1002
Tssr88266 9 16499258 to 16499260 2 - TSS region transcription start site region 88266
Cpgi21379 9 16499995 to 16500366 371 CpG island CpG island 21379
Cpgi21380 9 16500664 to 16502800 2136 CpG island CpG island 21380
Tssr88267 9 16501985 to 16502089 104 - TSS region transcription start site region 88267
Tssr88268 9 16502170 to 16502181 11 - TSS region transcription start site region 88268
Tssr88269 9 16502195 to 16502209 14 - TSS region transcription start site region 88269
Tssr88270 9 16502222 to 16502238 16 - TSS region transcription start site region 88270
Tssr88271 9 16502430 to 16502441 11 - TSS region transcription start site region 88271
Tssr88272 9 16502493 to 16502505 12 - TSS region transcription start site region 88272
Cpgi21381 9 16548535 to 16548739 204 CpG island CpG island 21381
1700037J18Rik 9 16599379 to 16599801 422 unclassified gene RIKEN cDNA 1700037J18 gene
Gm5611 9 17030045 to 17030896 851 + pseudogene predicted gene 5611
Tssr83878 9 17047229 to 17047254 25 + TSS region transcription start site region 83878
Gm39296 9 17181325 to 17356714 175389 - lncRNA gene predicted gene, 39296
Tssr83879 9 17395298 to 17395302 4 + TSS region transcription start site region 83879