Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:14649802-15070865

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr88177 9 14662906 to 14662920 14 - TSS region transcription start site region 88177
Tssr88178 9 14662925 to 14662950 25 - TSS region transcription start site region 88178
Tssr88179 9 14662961 to 14662974 13 - TSS region transcription start site region 88179
Tssr88180 9 14662988 to 14663006 18 - TSS region transcription start site region 88180
Tssr88181 9 14663014 to 14663076 62 - TSS region transcription start site region 88181
Gm7607 9 14663022 to 14665099 2077 + lincRNA gene predicted gene 7607
Tssr83842 9 14663070 to 14663078 8 + TSS region transcription start site region 83842
Tssr88182 9 14663098 to 14663117 19 - TSS region transcription start site region 88182
Tssr88183 9 14675989 to 14675995 6 - TSS region transcription start site region 88183
Tssr88184 9 14676017 to 14676028 11 - TSS region transcription start site region 88184
Tssr88185 9 14676036 to 14676041 5 - TSS region transcription start site region 88185
Tssr88186 9 14676048 to 14676054 6 - TSS region transcription start site region 88186
Tssr88187 9 14676224 to 14676251 27 - TSS region transcription start site region 88187
Gm19790 9 14679970 to 14680220 250 + pseudogene predicted gene, 19790
Gm18997 9 14693523 to 14694338 815 + pseudogene predicted gene, 18997
Piwil4 9 14701782 to 14740765 38983 - protein coding gene piwi-like RNA-mediated gene silencing 4
Tssr83843 9 14704506 to 14704515 9 + TSS region transcription start site region 83843
Tssr83844 9 14704525 to 14704551 26 + TSS region transcription start site region 83844
Gm10706 9 14704642 to 14719058 14416 + antisense lncRNA gene predicted gene 10706
Tssr88188 9 14718381 to 14718393 12 - TSS region transcription start site region 88188
Gm34651 9 14724626 to 14732081 7455 + lncRNA gene predicted gene, 34651
Gm15586 9 14736195 to 14736722 527 + pseudogene predicted gene 15586
Cpgi21360 9 14740516 to 14740760 244 CpG island CpG island 21360
Tssr88189 9 14740618 to 14740624 6 - TSS region transcription start site region 88189
Tssr88190 9 14740642 to 14740653 11 - TSS region transcription start site region 88190
Tssr88191 9 14740666 to 14740677 11 - TSS region transcription start site region 88191
Tssr88192 9 14740691 to 14740696 5 - TSS region transcription start site region 88192
Fut4 9 14748459 to 14752122 3663 - protein coding gene fucosyltransferase 4
Cpgi21361 9 14750660 to 14752525 1865 CpG island CpG island 21361
Tssr88193 9 14751958 to 14751973 15 - TSS region transcription start site region 88193
Tssr88194 9 14751987 to 14752016 29 - TSS region transcription start site region 88194
1700012B09Rik 9 14756592 to 14771034 14442 - protein coding gene RIKEN cDNA 1700012B09 gene
Cpgi21362 9 14770832 to 14771069 237 CpG island CpG island 21362
Tssr88195 9 14770964 to 14770976 12 - TSS region transcription start site region 88195
Tssr88196 9 14770979 to 14771000 21 - TSS region transcription start site region 88196
Tssr88197 9 14771004 to 14771044 40 - TSS region transcription start site region 88197
Tssr88198 9 14771141 to 14771150 9 - TSS region transcription start site region 88198
Tssr88199 9 14771156 to 14771165 9 - TSS region transcription start site region 88199
Tssr88200 9 14771171 to 14771178 7 - TSS region transcription start site region 88200
Tssr88201 9 14771189 to 14771202 13 - TSS region transcription start site region 88201
Tssr88202 9 14771205 to 14771221 16 - TSS region transcription start site region 88202
Ankrd49 9 14779782 to 14784601 4819 - protein coding gene ankyrin repeat domain 49
Tssr88203 9 14780346 to 14780358 12 - TSS region transcription start site region 88203
Tssr88204 9 14780361 to 14780383 22 - TSS region transcription start site region 88204
Tssr88205 9 14780491 to 14780502 11 - TSS region transcription start site region 88205
Cpgi21363 9 14784285 to 14785054 769 CpG island CpG island 21363
Tssr88206 9 14784506 to 14784577 71 - TSS region transcription start site region 88206
Tssr83845 9 14784638 to 14784658 20 + TSS region transcription start site region 83845
Mre11a 9 14784654 to 14837123 52469 + protein coding gene MRE11A homolog A, double strand break repair nuclease
Tssr83846 9 14784660 to 14784702 42 + TSS region transcription start site region 83846
Tssr83847 9 14784718 to 14784758 40 + TSS region transcription start site region 83847
Gm47154 9 14807774 to 14808040 266 - pseudogene predicted gene, 47154
Tssr83848 9 14810665 to 14810670 5 + TSS region transcription start site region 83848
Gm16379 9 14845365 to 14845712 347 - pseudogene predicted pseudogene 16379
Gm16302 9 14845613 to 14847835 2222 + lincRNA gene predicted gene 16302
Tssr83849 9 14858470 to 14858478 8 + TSS region transcription start site region 83849
Cpgi21364 9 14859802 to 14860865 1063 CpG island CpG island 21364
Tssr88207 9 14860077 to 14860105 28 - TSS region transcription start site region 88207
Gpr83 9 14860210 to 14870789 10579 + protein coding gene G protein-coupled receptor 83
Tssr83850 9 14860232 to 14860246 14 + TSS region transcription start site region 83850
Izumo1r 9 14885814 to 14903949 18135 - protein coding gene IZUMO1 receptor, JUNO
Tssr83851 9 14900520 to 14900545 25 + TSS region transcription start site region 83851
Tssr88208 9 14900795 to 14900843 48 - TSS region transcription start site region 88208
Tssr88209 9 14901902 to 14901911 9 - TSS region transcription start site region 88209
Tssr88210 9 14902524 to 14902559 35 - TSS region transcription start site region 88210
Tssr88211 9 14902560 to 14902571 11 - TSS region transcription start site region 88211
Tssr83852 9 14902672 to 14902692 20 + TSS region transcription start site region 83852
Tssr88212 9 14903052 to 14903067 15 - TSS region transcription start site region 88212
Tssr83853 9 14903195 to 14903204 9 + TSS region transcription start site region 83853
Tssr83854 9 14903494 to 14903501 7 + TSS region transcription start site region 83854
Tssr83855 9 14903507 to 14903520 13 + TSS region transcription start site region 83855
Tssr88213 9 14903752 to 14903772 20 - TSS region transcription start site region 88213
Tssr2785 9 14903783 to 14903786 3 - TSS region transcription start site region 2785
Tssr88214 9 14903808 to 14903815 7 - TSS region transcription start site region 88214
Tssr88215 9 14903851 to 14903854 3 - TSS region transcription start site region 88215
Tssr88216 9 14903866 to 14903882 16 - TSS region transcription start site region 88216
Tssr88217 9 14903890 to 14903897 7 - TSS region transcription start site region 88217
Tssr88218 9 14903910 to 14903921 11 - TSS region transcription start site region 88218
Tssr88219 9 14903938 to 14903948 10 - TSS region transcription start site region 88219
Tssr88220 9 14903962 to 14903971 9 - TSS region transcription start site region 88220
Tssr88221 9 14903990 to 14904000 10 - TSS region transcription start site region 88221
Tssr88222 9 14904723 to 14904734 11 - TSS region transcription start site region 88222
Gm18789 9 14915472 to 14916021 549 - pseudogene predicted gene, 18789
Gm47214 9 14949463 to 14977583 28120 + lincRNA gene predicted gene, 47214
n-TKctt4 9 14958433 to 14958505 72 - tRNA gene nuclear encoded tRNA lysine 4 (anticodon CTT)
Panx1 9 15005785 to 15045478 39693 - protein coding gene pannexin 1
Tssr88223 9 15007836 to 15007871 35 - TSS region transcription start site region 88223
Tssr88224 9 15007894 to 15007901 7 - TSS region transcription start site region 88224
Cpgi21365 9 15044576 to 15045766 1190 CpG island CpG island 21365
Tssr88225 9 15045106 to 15045135 29 - TSS region transcription start site region 88225
Tssr88226 9 15045145 to 15045156 11 - TSS region transcription start site region 88226
Tssr88227 9 15045378 to 15045502 124 - TSS region transcription start site region 88227
Tssr83856 9 15045581 to 15045593 12 + TSS region transcription start site region 83856
Hephl1 9 15051841 to 15112108 60267 - protein coding gene hephaestin-like 1