Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:13957049-14727158

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47557 9 13945281 to 13981814 36533 + lincRNA gene predicted gene, 47557
D9Mit1014 9 14007103 to 14007210 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1014
1700019J19Rik 9 14090077 to 14110535 20458 + lincRNA gene RIKEN cDNA 1700019J19 gene
Gm47559 9 14107054 to 14108123 1069 - lincRNA gene predicted gene, 47559
Gm39292 9 14146200 to 14152576 6376 - lncRNA gene predicted gene, 39292
Gm47564 9 14204083 to 14218183 14100 + lincRNA gene predicted gene, 47564
Gm47565 9 14249625 to 14250939 1314 - lincRNA gene predicted gene, 47565
Gm34069 9 14259041 to 14263803 4762 - lincRNA gene predicted gene, 34069
Cpgi21355 9 14274993 to 14275295 302 CpG island CpG island 21355
Cpgi21356 9 14275886 to 14277130 1244 CpG island CpG island 21356
Tssr2782 9 14275946 to 14275959 13 - TSS region transcription start site region 2782
Tssr88146 9 14275972 to 14275985 13 - TSS region transcription start site region 88146
Sesn3 9 14276301 to 14326134 49833 + protein coding gene sestrin 3
Tssr83832 9 14276320 to 14276347 27 + TSS region transcription start site region 83832
Tssr83833 9 14276492 to 14276501 9 + TSS region transcription start site region 83833
Tssr83834 9 14282370 to 14282373 3 + TSS region transcription start site region 83834
Gm47326 9 14335612 to 14343063 7451 + lincRNA gene predicted gene, 47326
D9Mit202 9 14342049 to 14342158 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 202
Endod1 9 14353990 to 14381242 27252 - protein coding gene endonuclease domain containing 1
Tssr88147 9 14354744 to 14354752 8 - TSS region transcription start site region 88147
Gm34156 9 14367685 to 14374808 7123 + lncRNA gene predicted gene, 34156
Cpgi21357 9 14380204 to 14381311 1107 CpG island CpG island 21357
Tssr88148 9 14380973 to 14381033 60 - TSS region transcription start site region 88148
Tssr88149 9 14381036 to 14381047 11 - TSS region transcription start site region 88149
Tssr83835 9 14381053 to 14381088 35 + TSS region transcription start site region 83835
Tssr88150 9 14381157 to 14381164 7 - TSS region transcription start site region 88150
Tssr88151 9 14381490 to 14381525 35 - TSS region transcription start site region 88151
Gm47321 9 14384361 to 14385654 1293 - pseudogene predicted gene, 47321
Gm47319 9 14385692 to 14389723 4031 + lincRNA gene predicted gene, 47319
Gm47318 9 14435321 to 14435411 90 - pseudogene predicted gene, 47318
Gm47317 9 14449355 to 14449439 84 - pseudogene predicted gene, 47317
Kdm4dl 9 14451015 to 14452022 1007 - pseudogene lysine (K)-specific demethylase 4D-like
Kdm4d 9 14462548 to 14500482 37934 - protein coding gene lysine (K)-specific demethylase 4D
Tssr88152 9 14499345 to 14499370 25 - TSS region transcription start site region 88152
Cpgi21358 9 14499992 to 14501108 1116 CpG island CpG island 21358
Tssr88153 9 14500303 to 14500319 16 - TSS region transcription start site region 88153
Tssr88154 9 14500363 to 14500377 14 - TSS region transcription start site region 88154
Tssr88155 9 14500394 to 14500427 33 - TSS region transcription start site region 88155
Tssr88156 9 14500428 to 14500460 32 - TSS region transcription start site region 88156
Tssr88157 9 14500489 to 14500503 14 - TSS region transcription start site region 88157
Tssr88158 9 14500507 to 14500526 19 - TSS region transcription start site region 88158
Tssr83836 9 14500611 to 14500620 9 + TSS region transcription start site region 83836
Cwc15 9 14500617 to 14510577 9960 + protein coding gene CWC15 spliceosome-associated protein
Tssr83837 9 14500625 to 14500651 26 + TSS region transcription start site region 83837
Tssr83838 9 14500660 to 14500737 77 + TSS region transcription start site region 83838
Tssr83839 9 14501886 to 14501919 33 + TSS region transcription start site region 83839
Tssr83840 9 14501980 to 14501998 18 + TSS region transcription start site region 83840
Gm47090 9 14525090 to 14525761 671 - pseudogene predicted gene, 47090
Amotl1 9 14541966 to 14645056 103090 - protein coding gene angiomotin-like 1
Tssr88159 9 14543574 to 14543612 38 - TSS region transcription start site region 88159
D9Mit61 9 14547275 to 14547421 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 61
Tssr88160 9 14574603 to 14574606 3 - TSS region transcription start site region 88160
5830461L22Rik 9 14586095 to 14592609 6514 unclassified gene RIKEN cDNA 5830461L22 gene
Tssr88161 9 14596519 to 14596535 16 - TSS region transcription start site region 88161
Cpgi21359 9 14614230 to 14615155 925 CpG island CpG island 21359
Tssr88162 9 14614799 to 14614808 9 - TSS region transcription start site region 88162
Tssr88163 9 14614826 to 14614837 11 - TSS region transcription start site region 88163
Tssr2783 9 14614865 to 14614884 19 - TSS region transcription start site region 2783
Tssr88164 9 14614893 to 14614906 13 - TSS region transcription start site region 88164
Tssr88165 9 14614949 to 14615034 85 - TSS region transcription start site region 88165
Tssr88166 9 14615297 to 14615309 12 - TSS region transcription start site region 88166
Tssr88167 9 14615389 to 14615401 12 - TSS region transcription start site region 88167
Tssr88168 9 14615418 to 14615425 7 - TSS region transcription start site region 88168
Tssr88169 9 14615428 to 14615438 10 - TSS region transcription start site region 88169
Tssr88170 9 14615445 to 14615455 10 - TSS region transcription start site region 88170
Tssr88171 9 14615473 to 14615490 17 - TSS region transcription start site region 88171
4930584E12Rik 9 14618585 to 14619565 980 - unclassified gene RIKEN cDNA 4930584E12 gene
Tssr88172 9 14634235 to 14634240 5 - TSS region transcription start site region 88172
Tssr88173 9 14634272 to 14634277 5 - TSS region transcription start site region 88173
Tssr88174 9 14634291 to 14634324 33 - TSS region transcription start site region 88174
Tssr88175 9 14643523 to 14643542 19 - TSS region transcription start site region 88175
Tssr88176 9 14643555 to 14643571 16 - TSS region transcription start site region 88176
Tssr2784 9 14643609 to 14643616 7 + TSS region transcription start site region 2784
Tssr83841 9 14643647 to 14643657 10 + TSS region transcription start site region 83841
Gm34263 9 14643772 to 14645792 2020 + lincRNA gene predicted gene, 34263
Tssr88177 9 14662906 to 14662920 14 - TSS region transcription start site region 88177
Tssr88178 9 14662925 to 14662950 25 - TSS region transcription start site region 88178
Tssr88179 9 14662961 to 14662974 13 - TSS region transcription start site region 88179
Tssr88180 9 14662988 to 14663006 18 - TSS region transcription start site region 88180
Tssr88181 9 14663014 to 14663076 62 - TSS region transcription start site region 88181
Gm7607 9 14663022 to 14665099 2077 + lincRNA gene predicted gene 7607
Tssr83842 9 14663070 to 14663078 8 + TSS region transcription start site region 83842
Tssr88182 9 14663098 to 14663117 19 - TSS region transcription start site region 88182
Tssr88183 9 14675989 to 14675995 6 - TSS region transcription start site region 88183
Tssr88184 9 14676017 to 14676028 11 - TSS region transcription start site region 88184
Tssr88185 9 14676036 to 14676041 5 - TSS region transcription start site region 88185
Tssr88186 9 14676048 to 14676054 6 - TSS region transcription start site region 88186
Tssr88187 9 14676224 to 14676251 27 - TSS region transcription start site region 88187
Gm19790 9 14679970 to 14680220 250 + pseudogene predicted gene, 19790
Gm18997 9 14693523 to 14694338 815 + pseudogene predicted gene, 18997
Piwil4 9 14701782 to 14740765 38983 - protein coding gene piwi-like RNA-mediated gene silencing 4
Tssr83843 9 14704506 to 14704515 9 + TSS region transcription start site region 83843
Tssr83844 9 14704525 to 14704551 26 + TSS region transcription start site region 83844
Gm10706 9 14704642 to 14719058 14416 + antisense lncRNA gene predicted gene 10706
Tssr88188 9 14718381 to 14718393 12 - TSS region transcription start site region 88188
Gm34651 9 14724626 to 14732081 7455 + lncRNA gene predicted gene, 34651