Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:13909654-15712123

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266 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47535 9 13915801 to 13920119 4318 - lincRNA gene predicted gene, 47535
Gm47557 9 13945281 to 13981814 36533 + lincRNA gene predicted gene, 47557
D9Mit1014 9 14007103 to 14007210 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1014
1700019J19Rik 9 14090077 to 14110535 20458 + lincRNA gene RIKEN cDNA 1700019J19 gene
Gm47559 9 14107054 to 14108123 1069 - lincRNA gene predicted gene, 47559
Gm39292 9 14146200 to 14152576 6376 - lncRNA gene predicted gene, 39292
Gm47564 9 14204083 to 14218183 14100 + lincRNA gene predicted gene, 47564
Gm47565 9 14249625 to 14250939 1314 - lincRNA gene predicted gene, 47565
Gm34069 9 14259041 to 14263803 4762 - lincRNA gene predicted gene, 34069
Cpgi21355 9 14274993 to 14275295 302 CpG island CpG island 21355
Cpgi21356 9 14275886 to 14277130 1244 CpG island CpG island 21356
Tssr2782 9 14275946 to 14275959 13 - TSS region transcription start site region 2782
Tssr88146 9 14275972 to 14275985 13 - TSS region transcription start site region 88146
Sesn3 9 14276301 to 14326134 49833 + protein coding gene sestrin 3
Tssr83832 9 14276320 to 14276347 27 + TSS region transcription start site region 83832
Tssr83833 9 14276492 to 14276501 9 + TSS region transcription start site region 83833
Tssr83834 9 14282370 to 14282373 3 + TSS region transcription start site region 83834
Gm47326 9 14335612 to 14343063 7451 + lincRNA gene predicted gene, 47326
D9Mit202 9 14342049 to 14342158 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 202
Endod1 9 14353990 to 14381242 27252 - protein coding gene endonuclease domain containing 1
Tssr88147 9 14354744 to 14354752 8 - TSS region transcription start site region 88147
Gm34156 9 14367685 to 14374808 7123 + lncRNA gene predicted gene, 34156
Cpgi21357 9 14380204 to 14381311 1107 CpG island CpG island 21357
Tssr88148 9 14380973 to 14381033 60 - TSS region transcription start site region 88148
Tssr88149 9 14381036 to 14381047 11 - TSS region transcription start site region 88149
Tssr83835 9 14381053 to 14381088 35 + TSS region transcription start site region 83835
Tssr88150 9 14381157 to 14381164 7 - TSS region transcription start site region 88150
Tssr88151 9 14381490 to 14381525 35 - TSS region transcription start site region 88151
Gm47321 9 14384361 to 14385654 1293 - pseudogene predicted gene, 47321
Gm47319 9 14385692 to 14389723 4031 + lincRNA gene predicted gene, 47319
Gm47318 9 14435321 to 14435411 90 - pseudogene predicted gene, 47318
Gm47317 9 14449355 to 14449439 84 - pseudogene predicted gene, 47317
Kdm4dl 9 14451015 to 14452022 1007 - pseudogene lysine (K)-specific demethylase 4D-like
Kdm4d 9 14462548 to 14500482 37934 - protein coding gene lysine (K)-specific demethylase 4D
Tssr88152 9 14499345 to 14499370 25 - TSS region transcription start site region 88152
Cpgi21358 9 14499992 to 14501108 1116 CpG island CpG island 21358
Tssr88153 9 14500303 to 14500319 16 - TSS region transcription start site region 88153
Tssr88154 9 14500363 to 14500377 14 - TSS region transcription start site region 88154
Tssr88155 9 14500394 to 14500427 33 - TSS region transcription start site region 88155
Tssr88156 9 14500428 to 14500460 32 - TSS region transcription start site region 88156
Tssr88157 9 14500489 to 14500503 14 - TSS region transcription start site region 88157
Tssr88158 9 14500507 to 14500526 19 - TSS region transcription start site region 88158
Tssr83836 9 14500611 to 14500620 9 + TSS region transcription start site region 83836
Cwc15 9 14500617 to 14510577 9960 + protein coding gene CWC15 spliceosome-associated protein
Tssr83837 9 14500625 to 14500651 26 + TSS region transcription start site region 83837
Tssr83838 9 14500660 to 14500737 77 + TSS region transcription start site region 83838
Tssr83839 9 14501886 to 14501919 33 + TSS region transcription start site region 83839
Tssr83840 9 14501980 to 14501998 18 + TSS region transcription start site region 83840
Gm47090 9 14525090 to 14525761 671 - pseudogene predicted gene, 47090
Amotl1 9 14541966 to 14645056 103090 - protein coding gene angiomotin-like 1
Tssr88159 9 14543574 to 14543612 38 - TSS region transcription start site region 88159
D9Mit61 9 14547275 to 14547421 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 61
Tssr88160 9 14574603 to 14574606 3 - TSS region transcription start site region 88160
5830461L22Rik 9 14586095 to 14592609 6514 unclassified gene RIKEN cDNA 5830461L22 gene
Tssr88161 9 14596519 to 14596535 16 - TSS region transcription start site region 88161
Cpgi21359 9 14614230 to 14615155 925 CpG island CpG island 21359
Tssr88162 9 14614799 to 14614808 9 - TSS region transcription start site region 88162
Tssr88163 9 14614826 to 14614837 11 - TSS region transcription start site region 88163
Tssr2783 9 14614865 to 14614884 19 - TSS region transcription start site region 2783
Tssr88164 9 14614893 to 14614906 13 - TSS region transcription start site region 88164
Tssr88165 9 14614949 to 14615034 85 - TSS region transcription start site region 88165
Tssr88166 9 14615297 to 14615309 12 - TSS region transcription start site region 88166
Tssr88167 9 14615389 to 14615401 12 - TSS region transcription start site region 88167
Tssr88168 9 14615418 to 14615425 7 - TSS region transcription start site region 88168
Tssr88169 9 14615428 to 14615438 10 - TSS region transcription start site region 88169
Tssr88170 9 14615445 to 14615455 10 - TSS region transcription start site region 88170
Tssr88171 9 14615473 to 14615490 17 - TSS region transcription start site region 88171
4930584E12Rik 9 14618585 to 14619565 980 - unclassified gene RIKEN cDNA 4930584E12 gene
Tssr88172 9 14634235 to 14634240 5 - TSS region transcription start site region 88172
Tssr88173 9 14634272 to 14634277 5 - TSS region transcription start site region 88173
Tssr88174 9 14634291 to 14634324 33 - TSS region transcription start site region 88174
Tssr88175 9 14643523 to 14643542 19 - TSS region transcription start site region 88175
Tssr88176 9 14643555 to 14643571 16 - TSS region transcription start site region 88176
Tssr2784 9 14643609 to 14643616 7 + TSS region transcription start site region 2784
Tssr83841 9 14643647 to 14643657 10 + TSS region transcription start site region 83841
Gm34263 9 14643772 to 14645792 2020 + lincRNA gene predicted gene, 34263
Tssr88177 9 14662906 to 14662920 14 - TSS region transcription start site region 88177
Tssr88178 9 14662925 to 14662950 25 - TSS region transcription start site region 88178
Tssr88179 9 14662961 to 14662974 13 - TSS region transcription start site region 88179
Tssr88180 9 14662988 to 14663006 18 - TSS region transcription start site region 88180
Tssr88181 9 14663014 to 14663076 62 - TSS region transcription start site region 88181
Gm7607 9 14663022 to 14665099 2077 + lincRNA gene predicted gene 7607
Tssr83842 9 14663070 to 14663078 8 + TSS region transcription start site region 83842
Tssr88182 9 14663098 to 14663117 19 - TSS region transcription start site region 88182
Tssr88183 9 14675989 to 14675995 6 - TSS region transcription start site region 88183
Tssr88184 9 14676017 to 14676028 11 - TSS region transcription start site region 88184
Tssr88185 9 14676036 to 14676041 5 - TSS region transcription start site region 88185
Tssr88186 9 14676048 to 14676054 6 - TSS region transcription start site region 88186
Tssr88187 9 14676224 to 14676251 27 - TSS region transcription start site region 88187
Gm19790 9 14679970 to 14680220 250 + pseudogene predicted gene, 19790
Gm18997 9 14693523 to 14694338 815 + pseudogene predicted gene, 18997
Piwil4 9 14701782 to 14740765 38983 - protein coding gene piwi-like RNA-mediated gene silencing 4
Tssr83843 9 14704506 to 14704515 9 + TSS region transcription start site region 83843
Tssr83844 9 14704525 to 14704551 26 + TSS region transcription start site region 83844
Gm10706 9 14704642 to 14719058 14416 + antisense lncRNA gene predicted gene 10706
Tssr88188 9 14718381 to 14718393 12 - TSS region transcription start site region 88188
Gm34651 9 14724626 to 14732081 7455 + lncRNA gene predicted gene, 34651
Gm15586 9 14736195 to 14736722 527 + pseudogene predicted gene 15586
Cpgi21360 9 14740516 to 14740760 244 CpG island CpG island 21360
Tssr88189 9 14740618 to 14740624 6 - TSS region transcription start site region 88189
Tssr88190 9 14740642 to 14740653 11 - TSS region transcription start site region 88190
Tssr88191 9 14740666 to 14740677 11 - TSS region transcription start site region 88191
Tssr88192 9 14740691 to 14740696 5 - TSS region transcription start site region 88192
Fut4 9 14748459 to 14752122 3663 - protein coding gene fucosyltransferase 4
Cpgi21361 9 14750660 to 14752525 1865 CpG island CpG island 21361
Tssr88193 9 14751958 to 14751973 15 - TSS region transcription start site region 88193
Tssr88194 9 14751987 to 14752016 29 - TSS region transcription start site region 88194
1700012B09Rik 9 14756592 to 14771034 14442 - protein coding gene RIKEN cDNA 1700012B09 gene
Cpgi21362 9 14770832 to 14771069 237 CpG island CpG island 21362
Tssr88195 9 14770964 to 14770976 12 - TSS region transcription start site region 88195
Tssr88196 9 14770979 to 14771000 21 - TSS region transcription start site region 88196
Tssr88197 9 14771004 to 14771044 40 - TSS region transcription start site region 88197
Tssr88198 9 14771141 to 14771150 9 - TSS region transcription start site region 88198
Tssr88199 9 14771156 to 14771165 9 - TSS region transcription start site region 88199
Tssr88200 9 14771171 to 14771178 7 - TSS region transcription start site region 88200
Tssr88201 9 14771189 to 14771202 13 - TSS region transcription start site region 88201
Tssr88202 9 14771205 to 14771221 16 - TSS region transcription start site region 88202
Ankrd49 9 14779782 to 14784601 4819 - protein coding gene ankyrin repeat domain 49
Tssr88203 9 14780346 to 14780358 12 - TSS region transcription start site region 88203
Tssr88204 9 14780361 to 14780383 22 - TSS region transcription start site region 88204
Tssr88205 9 14780491 to 14780502 11 - TSS region transcription start site region 88205
Cpgi21363 9 14784285 to 14785054 769 CpG island CpG island 21363
Tssr88206 9 14784506 to 14784577 71 - TSS region transcription start site region 88206
Tssr83845 9 14784638 to 14784658 20 + TSS region transcription start site region 83845
Mre11a 9 14784654 to 14837123 52469 + protein coding gene MRE11A homolog A, double strand break repair nuclease
Tssr83846 9 14784660 to 14784702 42 + TSS region transcription start site region 83846
Tssr83847 9 14784718 to 14784758 40 + TSS region transcription start site region 83847
Gm47154 9 14807774 to 14808040 266 - pseudogene predicted gene, 47154
Tssr83848 9 14810665 to 14810670 5 + TSS region transcription start site region 83848
Gm16379 9 14845365 to 14845712 347 - pseudogene predicted pseudogene 16379
Gm16302 9 14845613 to 14847835 2222 + lincRNA gene predicted gene 16302
Tssr83849 9 14858470 to 14858478 8 + TSS region transcription start site region 83849
Cpgi21364 9 14859802 to 14860865 1063 CpG island CpG island 21364
Tssr88207 9 14860077 to 14860105 28 - TSS region transcription start site region 88207
Gpr83 9 14860210 to 14870789 10579 + protein coding gene G protein-coupled receptor 83
Tssr83850 9 14860232 to 14860246 14 + TSS region transcription start site region 83850
Izumo1r 9 14885814 to 14903949 18135 - protein coding gene IZUMO1 receptor, JUNO
Tssr83851 9 14900520 to 14900545 25 + TSS region transcription start site region 83851
Tssr88208 9 14900795 to 14900843 48 - TSS region transcription start site region 88208
Tssr88209 9 14901902 to 14901911 9 - TSS region transcription start site region 88209
Tssr88210 9 14902524 to 14902559 35 - TSS region transcription start site region 88210
Tssr88211 9 14902560 to 14902571 11 - TSS region transcription start site region 88211
Tssr83852 9 14902672 to 14902692 20 + TSS region transcription start site region 83852
Tssr88212 9 14903052 to 14903067 15 - TSS region transcription start site region 88212
Tssr83853 9 14903195 to 14903204 9 + TSS region transcription start site region 83853
Tssr83854 9 14903494 to 14903501 7 + TSS region transcription start site region 83854
Tssr83855 9 14903507 to 14903520 13 + TSS region transcription start site region 83855
Tssr88213 9 14903752 to 14903772 20 - TSS region transcription start site region 88213
Tssr2785 9 14903783 to 14903786 3 - TSS region transcription start site region 2785
Tssr88214 9 14903808 to 14903815 7 - TSS region transcription start site region 88214
Tssr88215 9 14903851 to 14903854 3 - TSS region transcription start site region 88215
Tssr88216 9 14903866 to 14903882 16 - TSS region transcription start site region 88216
Tssr88217 9 14903890 to 14903897 7 - TSS region transcription start site region 88217
Tssr88218 9 14903910 to 14903921 11 - TSS region transcription start site region 88218
Tssr88219 9 14903938 to 14903948 10 - TSS region transcription start site region 88219
Tssr88220 9 14903962 to 14903971 9 - TSS region transcription start site region 88220
Tssr88221 9 14903990 to 14904000 10 - TSS region transcription start site region 88221
Tssr88222 9 14904723 to 14904734 11 - TSS region transcription start site region 88222
Gm18789 9 14915472 to 14916021 549 - pseudogene predicted gene, 18789
Gm47214 9 14949463 to 14977583 28120 + lincRNA gene predicted gene, 47214
n-TKctt4 9 14958433 to 14958505 72 - tRNA gene nuclear encoded tRNA lysine 4 (anticodon CTT)
Panx1 9 15005785 to 15045478 39693 - protein coding gene pannexin 1
Tssr88223 9 15007836 to 15007871 35 - TSS region transcription start site region 88223
Tssr88224 9 15007894 to 15007901 7 - TSS region transcription start site region 88224
Cpgi21365 9 15044576 to 15045766 1190 CpG island CpG island 21365
Tssr88225 9 15045106 to 15045135 29 - TSS region transcription start site region 88225
Tssr88226 9 15045145 to 15045156 11 - TSS region transcription start site region 88226
Tssr88227 9 15045378 to 15045502 124 - TSS region transcription start site region 88227
Tssr83856 9 15045581 to 15045593 12 + TSS region transcription start site region 83856
Hephl1 9 15051841 to 15112108 60267 - protein coding gene hephaestin-like 1
Tssr88228 9 15112100 to 15112119 19 - TSS region transcription start site region 88228
Tssr88229 9 15112145 to 15112157 12 - TSS region transcription start site region 88229
D9Mit220 9 15147858 to 15147976 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 220
Tssr83857 9 15207108 to 15207109 1 + TSS region transcription start site region 83857
Tssr83858 9 15208434 to 15208440 6 + TSS region transcription start site region 83858
Gm22658 9 15211631 to 15211785 154 - snRNA gene predicted gene, 22658
D9Dcr137 9 15215513 to 15215608 95 DNA segment DNA Segment, Chr 9, Derry C. Roopenian 137
Gm39293 9 15226918 to 15233358 6440 - lncRNA gene predicted gene, 39293
Cpgi21366 9 15238516 to 15239615 1099 CpG island CpG island 21366
Vstm5 9 15239045 to 15259416 20371 + protein coding gene V-set and transmembrane domain containing 5
Tssr83859 9 15239066 to 15239155 89 + TSS region transcription start site region 83859
Med17 9 15260351 to 15279931 19580 - protein coding gene mediator complex subunit 17
Tssr88230 9 15278789 to 15278793 4 - TSS region transcription start site region 88230
Tssr88231 9 15279361 to 15279366 5 - TSS region transcription start site region 88231
Cpgi21367 9 15279407 to 15280278 871 CpG island CpG island 21367
Tssr88232 9 15279847 to 15279856 9 - TSS region transcription start site region 88232
Tssr88233 9 15279860 to 15279877 17 - TSS region transcription start site region 88233
Tssr88234 9 15279888 to 15279919 31 - TSS region transcription start site region 88234
Tssr2786 9 15279922 to 15279927 5 - TSS region transcription start site region 2786
4931406C07Rik 9 15283337 to 15306448 23111 - protein coding gene RIKEN cDNA 4931406C07 gene
Tssr88235 9 15284643 to 15284658 15 - TSS region transcription start site region 88235
Tssr88236 9 15288048 to 15288081 33 - TSS region transcription start site region 88236
Tssr88237 9 15301449 to 15301549 100 - TSS region transcription start site region 88237
Tssr88238 9 15301555 to 15301571 16 - TSS region transcription start site region 88238
Tssr88239 9 15301676 to 15301683 7 - TSS region transcription start site region 88239
Cpgi21368 9 15305747 to 15306781 1034 CpG island CpG island 21368
Tssr88240 9 15306095 to 15306114 19 - TSS region transcription start site region 88240
Tssr88241 9 15306116 to 15306159 43 - TSS region transcription start site region 88241
Tssr83860 9 15306212 to 15306219 7 + TSS region transcription start site region 83860
Taf1d 9 15306214 to 15316991 10777 + protein coding gene TATA-box binding protein associated factor, RNA polymerase I, D