Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:13681200-14617576

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109 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Maml2 9 13297957 to 13709388 411431 + protein coding gene mastermind like transcriptional coactivator 2
Tssr83812 9 13707275 to 13707279 4 + TSS region transcription start site region 83812
Tssr83813 9 13708915 to 13708929 14 + TSS region transcription start site region 83813
Gm47105 9 13727087 to 13727442 355 - pseudogene predicted gene, 47105
Gm39291 9 13737293 to 13749116 11823 - lncRNA gene predicted gene, 39291
Mtmr2 9 13748410 to 13806481 58071 + protein coding gene myotubularin related protein 2
Cpgi21353 9 13748829 to 13749709 880 CpG island CpG island 21353
Tssr83814 9 13749154 to 13749205 51 + TSS region transcription start site region 83814
Tssr83815 9 13749244 to 13749275 31 + TSS region transcription start site region 83815
Tssr83816 9 13749291 to 13749321 30 + TSS region transcription start site region 83816
Tssr83817 9 13751418 to 13751420 2 + TSS region transcription start site region 83817
Tssr2780 9 13765915 to 13765920 5 + TSS region transcription start site region 2780
Tssr83818 9 13765929 to 13765944 15 + TSS region transcription start site region 83818
Tssr83819 9 13765947 to 13765968 21 + TSS region transcription start site region 83819
Tssr83820 9 13765970 to 13765983 13 + TSS region transcription start site region 83820
Tssr83821 9 13766785 to 13766797 12 + TSS region transcription start site region 83821
Tssr83822 9 13766824 to 13766841 17 + TSS region transcription start site region 83822
Tssr83823 9 13806024 to 13806027 3 + TSS region transcription start site region 83823
Tssr83824 9 13806696 to 13806699 3 + TSS region transcription start site region 83824
Cep57 9 13807792 to 13827107 19315 - protein coding gene centrosomal protein 57
Tssr88138 9 13818670 to 13818689 19 - TSS region transcription start site region 88138
Tssr88139 9 13821688 to 13821693 5 - TSS region transcription start site region 88139
Cpgi21354 9 13826376 to 13828424 2048 CpG island CpG island 21354
Tssr88140 9 13826542 to 13826554 12 - TSS region transcription start site region 88140
Tssr88141 9 13826911 to 13826945 34 - TSS region transcription start site region 88141
Tssr88142 9 13826946 to 13826972 26 - TSS region transcription start site region 88142
Tssr88143 9 13826981 to 13827000 19 - TSS region transcription start site region 88143
Tssr88144 9 13827008 to 13827028 20 - TSS region transcription start site region 88144
Tssr88145 9 13827029 to 13827129 100 - TSS region transcription start site region 88145
Tssr83825 9 13827218 to 13827226 8 + TSS region transcription start site region 83825
Tssr2781 9 13827372 to 13827388 16 - TSS region transcription start site region 2781
Fam76b 9 13827700 to 13854687 26987 + protein coding gene family with sequence similarity 76, member B
Tssr83826 9 13827708 to 13827781 73 + TSS region transcription start site region 83826
Tssr83827 9 13827781 to 13827784 3 + TSS region transcription start site region 83827
Tssr83828 9 13827818 to 13827828 10 + TSS region transcription start site region 83828
Tssr83829 9 13833050 to 13833075 25 + TSS region transcription start site region 83829
Tssr83830 9 13835501 to 13835504 3 + TSS region transcription start site region 83830
D9Mit219 9 13866466 to 13866584 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 219
D9Mit219.1 9 13866582 to 13866771 189 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 219.1
Gm7588 9 13868706 to 13869276 570 + pseudogene predicted gene 7588
Tssr83831 9 13894846 to 13894852 6 + TSS region transcription start site region 83831
D9Mit84 9 13901574 to 13901707 133 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 84
Gm47535 9 13915801 to 13920119 4318 - lincRNA gene predicted gene, 47535
Gm47557 9 13945281 to 13981814 36533 + lincRNA gene predicted gene, 47557
D9Mit1014 9 14007103 to 14007210 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1014
1700019J19Rik 9 14090077 to 14110535 20458 + lincRNA gene RIKEN cDNA 1700019J19 gene
Gm47559 9 14107054 to 14108123 1069 - lincRNA gene predicted gene, 47559
Gm39292 9 14146200 to 14152576 6376 - lncRNA gene predicted gene, 39292
Gm47564 9 14204083 to 14218183 14100 + lincRNA gene predicted gene, 47564
Gm47565 9 14249625 to 14250939 1314 - lincRNA gene predicted gene, 47565
Gm34069 9 14259041 to 14263803 4762 - lincRNA gene predicted gene, 34069
Cpgi21355 9 14274993 to 14275295 302 CpG island CpG island 21355
Cpgi21356 9 14275886 to 14277130 1244 CpG island CpG island 21356
Tssr2782 9 14275946 to 14275959 13 - TSS region transcription start site region 2782
Tssr88146 9 14275972 to 14275985 13 - TSS region transcription start site region 88146
Sesn3 9 14276301 to 14326134 49833 + protein coding gene sestrin 3
Tssr83832 9 14276320 to 14276347 27 + TSS region transcription start site region 83832
Tssr83833 9 14276492 to 14276501 9 + TSS region transcription start site region 83833
Tssr83834 9 14282370 to 14282373 3 + TSS region transcription start site region 83834
Gm47326 9 14335612 to 14343063 7451 + lincRNA gene predicted gene, 47326
D9Mit202 9 14342049 to 14342158 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 202
Endod1 9 14353990 to 14381242 27252 - protein coding gene endonuclease domain containing 1
Tssr88147 9 14354744 to 14354752 8 - TSS region transcription start site region 88147
Gm34156 9 14367685 to 14374808 7123 + lncRNA gene predicted gene, 34156
Cpgi21357 9 14380204 to 14381311 1107 CpG island CpG island 21357
Tssr88148 9 14380973 to 14381033 60 - TSS region transcription start site region 88148
Tssr88149 9 14381036 to 14381047 11 - TSS region transcription start site region 88149
Tssr83835 9 14381053 to 14381088 35 + TSS region transcription start site region 83835
Tssr88150 9 14381157 to 14381164 7 - TSS region transcription start site region 88150
Tssr88151 9 14381490 to 14381525 35 - TSS region transcription start site region 88151
Gm47321 9 14384361 to 14385654 1293 - pseudogene predicted gene, 47321
Gm47319 9 14385692 to 14389723 4031 + lincRNA gene predicted gene, 47319
Gm47318 9 14435321 to 14435411 90 - pseudogene predicted gene, 47318
Gm47317 9 14449355 to 14449439 84 - pseudogene predicted gene, 47317
Kdm4dl 9 14451015 to 14452022 1007 - pseudogene lysine (K)-specific demethylase 4D-like
Kdm4d 9 14462548 to 14500482 37934 - protein coding gene lysine (K)-specific demethylase 4D
Tssr88152 9 14499345 to 14499370 25 - TSS region transcription start site region 88152
Cpgi21358 9 14499992 to 14501108 1116 CpG island CpG island 21358
Tssr88153 9 14500303 to 14500319 16 - TSS region transcription start site region 88153
Tssr88154 9 14500363 to 14500377 14 - TSS region transcription start site region 88154
Tssr88155 9 14500394 to 14500427 33 - TSS region transcription start site region 88155
Tssr88156 9 14500428 to 14500460 32 - TSS region transcription start site region 88156
Tssr88157 9 14500489 to 14500503 14 - TSS region transcription start site region 88157
Tssr88158 9 14500507 to 14500526 19 - TSS region transcription start site region 88158
Tssr83836 9 14500611 to 14500620 9 + TSS region transcription start site region 83836
Cwc15 9 14500617 to 14510577 9960 + protein coding gene CWC15 spliceosome-associated protein
Tssr83837 9 14500625 to 14500651 26 + TSS region transcription start site region 83837
Tssr83838 9 14500660 to 14500737 77 + TSS region transcription start site region 83838
Tssr83839 9 14501886 to 14501919 33 + TSS region transcription start site region 83839
Tssr83840 9 14501980 to 14501998 18 + TSS region transcription start site region 83840
Gm47090 9 14525090 to 14525761 671 - pseudogene predicted gene, 47090
Amotl1 9 14541966 to 14645056 103090 - protein coding gene angiomotin-like 1
Tssr88159 9 14543574 to 14543612 38 - TSS region transcription start site region 88159
D9Mit61 9 14547275 to 14547421 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 61
Tssr88160 9 14574603 to 14574606 3 - TSS region transcription start site region 88160
5830461L22Rik 9 14586095 to 14592609 6514 unclassified gene RIKEN cDNA 5830461L22 gene
Tssr88161 9 14596519 to 14596535 16 - TSS region transcription start site region 88161
Cpgi21359 9 14614230 to 14615155 925 CpG island CpG island 21359
Tssr88162 9 14614799 to 14614808 9 - TSS region transcription start site region 88162
Tssr88163 9 14614826 to 14614837 11 - TSS region transcription start site region 88163
Tssr2783 9 14614865 to 14614884 19 - TSS region transcription start site region 2783
Tssr88164 9 14614893 to 14614906 13 - TSS region transcription start site region 88164
Tssr88165 9 14614949 to 14615034 85 - TSS region transcription start site region 88165
Tssr88166 9 14615297 to 14615309 12 - TSS region transcription start site region 88166
Tssr88167 9 14615389 to 14615401 12 - TSS region transcription start site region 88167
Tssr88168 9 14615418 to 14615425 7 - TSS region transcription start site region 88168
Tssr88169 9 14615428 to 14615438 10 - TSS region transcription start site region 88169
Tssr88170 9 14615445 to 14615455 10 - TSS region transcription start site region 88170
Tssr88171 9 14615473 to 14615490 17 - TSS region transcription start site region 88171