Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:12663915-14753929

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm25365 9 12780165 to 12780285 120 + rRNA gene predicted gene, 25365
Gm7570 9 12819525 to 12820219 694 + pseudogene predicted gene 7570
Tssr83801 9 12839130 to 12839135 5 + TSS region transcription start site region 83801
Tssr83802 9 12865361 to 12865364 3 + TSS region transcription start site region 83802
Gm21070 9 12865433 to 12866417 984 + pseudogene predicted gene, 21070
Chol6 9 12902732 to 12902908 176 QTL cholesterol 6
D9Mit58 9 12902732 to 12902908 176 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 58
4930568E12Rik 9 13091267 to 13105855 14588 - lincRNA gene RIKEN cDNA 4930568E12 gene
Tssr88137 9 13105851 to 13105858 7 - TSS region transcription start site region 88137
Gm47051 9 13106013 to 13136998 30985 + lincRNA gene predicted gene, 47051
Tssr2762 9 13179365 to 13179386 21 + TSS region transcription start site region 2762
Jrkl 9 13242790 to 13245741 2951 - protein coding gene Jrk-like
Tssr2763 9 13246945 to 13247002 57 + TSS region transcription start site region 2763
Ccdc82 9 13246955 to 13292520 45565 + protein coding gene coiled-coil domain containing 82
Gm26189 9 13275516 to 13275622 106 + snRNA gene predicted gene, 26189
Tssr2764 9 13296584 to 13296601 17 + TSS region transcription start site region 2764
Tssr2765 9 13296621 to 13296670 49 + TSS region transcription start site region 2765
Tssr2766 9 13296681 to 13296736 55 + TSS region transcription start site region 2766
Tssr2767 9 13296737 to 13296825 88 + TSS region transcription start site region 2767
Tssr2768 9 13296839 to 13296852 13 + TSS region transcription start site region 2768
Tssr2769 9 13296964 to 13296979 15 + TSS region transcription start site region 2769
Tssr2770 9 13297952 to 13297999 47 + TSS region transcription start site region 2770
Maml2 9 13297957 to 13709388 411431 + protein coding gene mastermind like transcriptional coactivator 2
Tssr2771 9 13298131 to 13298184 53 + TSS region transcription start site region 2771
Tssr2772 9 13298185 to 13298201 16 + TSS region transcription start site region 2772
Tssr2773 9 13302913 to 13302915 2 + TSS region transcription start site region 2773
Gm47087 9 13308214 to 13312446 4232 + unclassified gene predicted gene, 47087
Tssr2774 9 13310790 to 13310830 40 + TSS region transcription start site region 2774
Tssr2775 9 13310876 to 13310889 13 + TSS region transcription start site region 2775
Tssr2776 9 13317583 to 13317589 6 + TSS region transcription start site region 2776
Tssr2777 9 13324032 to 13324055 23 + TSS region transcription start site region 2777
Tssr83803 9 13414342 to 13414388 46 + TSS region transcription start site region 83803
Dcollq1 9 13430544 to 13430544 0 QTL differential colonization level QTL 1
Phxr4 9 13431361 to 13432751 1390 + unclassified gene per-hexamer repeat gene 4
Tssr83804 9 13433149 to 13433154 5 + TSS region transcription start site region 83804
Gm17571 9 13444034 to 13446753 2719 - protein coding gene predicted gene, 17571
Tssr83805 9 13466640 to 13466649 9 + TSS region transcription start site region 83805
Tssr83806 9 13470003 to 13470009 6 + TSS region transcription start site region 83806
Tssr83807 9 13473863 to 13473867 4 + TSS region transcription start site region 83807
Tssr2778 9 13514680 to 13514695 15 + TSS region transcription start site region 2778
Tssr2779 9 13514715 to 13514744 29 + TSS region transcription start site region 2779
Gm47089 9 13519936 to 13520101 165 + unclassified gene predicted gene, 47089
Tssr83808 9 13620977 to 13620991 14 + TSS region transcription start site region 83808
Gm22643 9 13621226 to 13621326 100 + miRNA gene predicted gene, 22643
Tssr83809 9 13625680 to 13625685 5 + TSS region transcription start site region 83809
Tssr83810 9 13662193 to 13662194 1 + TSS region transcription start site region 83810
Tssr83811 9 13662584 to 13662630 46 + TSS region transcription start site region 83811
Tssr83812 9 13707275 to 13707279 4 + TSS region transcription start site region 83812
Tssr83813 9 13708915 to 13708929 14 + TSS region transcription start site region 83813
Gm47105 9 13727087 to 13727442 355 - pseudogene predicted gene, 47105
Gm39291 9 13737293 to 13749116 11823 - lncRNA gene predicted gene, 39291
Mtmr2 9 13748410 to 13806481 58071 + protein coding gene myotubularin related protein 2
Cpgi21353 9 13748829 to 13749709 880 CpG island CpG island 21353
Tssr83814 9 13749154 to 13749205 51 + TSS region transcription start site region 83814
Tssr83815 9 13749244 to 13749275 31 + TSS region transcription start site region 83815
Tssr83816 9 13749291 to 13749321 30 + TSS region transcription start site region 83816
Tssr83817 9 13751418 to 13751420 2 + TSS region transcription start site region 83817
Tssr2780 9 13765915 to 13765920 5 + TSS region transcription start site region 2780
Tssr83818 9 13765929 to 13765944 15 + TSS region transcription start site region 83818
Tssr83819 9 13765947 to 13765968 21 + TSS region transcription start site region 83819
Tssr83820 9 13765970 to 13765983 13 + TSS region transcription start site region 83820
Tssr83821 9 13766785 to 13766797 12 + TSS region transcription start site region 83821
Tssr83822 9 13766824 to 13766841 17 + TSS region transcription start site region 83822
Tssr83823 9 13806024 to 13806027 3 + TSS region transcription start site region 83823
Tssr83824 9 13806696 to 13806699 3 + TSS region transcription start site region 83824
Cep57 9 13807792 to 13827107 19315 - protein coding gene centrosomal protein 57
Tssr88138 9 13818670 to 13818689 19 - TSS region transcription start site region 88138
Tssr88139 9 13821688 to 13821693 5 - TSS region transcription start site region 88139
Cpgi21354 9 13826376 to 13828424 2048 CpG island CpG island 21354
Tssr88140 9 13826542 to 13826554 12 - TSS region transcription start site region 88140
Tssr88141 9 13826911 to 13826945 34 - TSS region transcription start site region 88141
Tssr88142 9 13826946 to 13826972 26 - TSS region transcription start site region 88142
Tssr88143 9 13826981 to 13827000 19 - TSS region transcription start site region 88143
Tssr88144 9 13827008 to 13827028 20 - TSS region transcription start site region 88144
Tssr88145 9 13827029 to 13827129 100 - TSS region transcription start site region 88145
Tssr83825 9 13827218 to 13827226 8 + TSS region transcription start site region 83825
Tssr2781 9 13827372 to 13827388 16 - TSS region transcription start site region 2781
Fam76b 9 13827700 to 13854687 26987 + protein coding gene family with sequence similarity 76, member B
Tssr83826 9 13827708 to 13827781 73 + TSS region transcription start site region 83826
Tssr83827 9 13827781 to 13827784 3 + TSS region transcription start site region 83827
Tssr83828 9 13827818 to 13827828 10 + TSS region transcription start site region 83828
Tssr83829 9 13833050 to 13833075 25 + TSS region transcription start site region 83829
Tssr83830 9 13835501 to 13835504 3 + TSS region transcription start site region 83830
D9Mit219 9 13866466 to 13866584 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 219
D9Mit219.1 9 13866582 to 13866771 189 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 219.1
Gm7588 9 13868706 to 13869276 570 + pseudogene predicted gene 7588
Tssr83831 9 13894846 to 13894852 6 + TSS region transcription start site region 83831
D9Mit84 9 13901574 to 13901707 133 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 84
Gm47535 9 13915801 to 13920119 4318 - lincRNA gene predicted gene, 47535
Gm47557 9 13945281 to 13981814 36533 + lincRNA gene predicted gene, 47557
D9Mit1014 9 14007103 to 14007210 107 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1014
1700019J19Rik 9 14090077 to 14110535 20458 + lincRNA gene RIKEN cDNA 1700019J19 gene
Gm47559 9 14107054 to 14108123 1069 - lincRNA gene predicted gene, 47559
Gm39292 9 14146200 to 14152576 6376 - lncRNA gene predicted gene, 39292
Gm47564 9 14204083 to 14218183 14100 + lincRNA gene predicted gene, 47564
Gm47565 9 14249625 to 14250939 1314 - lincRNA gene predicted gene, 47565
Gm34069 9 14259041 to 14263803 4762 - lincRNA gene predicted gene, 34069
Cpgi21355 9 14274993 to 14275295 302 CpG island CpG island 21355
Cpgi21356 9 14275886 to 14277130 1244 CpG island CpG island 21356
Tssr2782 9 14275946 to 14275959 13 - TSS region transcription start site region 2782
Tssr88146 9 14275972 to 14275985 13 - TSS region transcription start site region 88146
Sesn3 9 14276301 to 14326134 49833 + protein coding gene sestrin 3
Tssr83832 9 14276320 to 14276347 27 + TSS region transcription start site region 83832
Tssr83833 9 14276492 to 14276501 9 + TSS region transcription start site region 83833
Tssr83834 9 14282370 to 14282373 3 + TSS region transcription start site region 83834
Gm47326 9 14335612 to 14343063 7451 + lincRNA gene predicted gene, 47326
D9Mit202 9 14342049 to 14342158 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 202
Endod1 9 14353990 to 14381242 27252 - protein coding gene endonuclease domain containing 1
Tssr88147 9 14354744 to 14354752 8 - TSS region transcription start site region 88147
Gm34156 9 14367685 to 14374808 7123 + lncRNA gene predicted gene, 34156
Cpgi21357 9 14380204 to 14381311 1107 CpG island CpG island 21357
Tssr88148 9 14380973 to 14381033 60 - TSS region transcription start site region 88148
Tssr88149 9 14381036 to 14381047 11 - TSS region transcription start site region 88149
Tssr83835 9 14381053 to 14381088 35 + TSS region transcription start site region 83835
Tssr88150 9 14381157 to 14381164 7 - TSS region transcription start site region 88150
Tssr88151 9 14381490 to 14381525 35 - TSS region transcription start site region 88151
Gm47321 9 14384361 to 14385654 1293 - pseudogene predicted gene, 47321
Gm47319 9 14385692 to 14389723 4031 + lincRNA gene predicted gene, 47319
Gm47318 9 14435321 to 14435411 90 - pseudogene predicted gene, 47318
Gm47317 9 14449355 to 14449439 84 - pseudogene predicted gene, 47317
Kdm4dl 9 14451015 to 14452022 1007 - pseudogene lysine (K)-specific demethylase 4D-like
Kdm4d 9 14462548 to 14500482 37934 - protein coding gene lysine (K)-specific demethylase 4D
Tssr88152 9 14499345 to 14499370 25 - TSS region transcription start site region 88152
Cpgi21358 9 14499992 to 14501108 1116 CpG island CpG island 21358
Tssr88153 9 14500303 to 14500319 16 - TSS region transcription start site region 88153
Tssr88154 9 14500363 to 14500377 14 - TSS region transcription start site region 88154
Tssr88155 9 14500394 to 14500427 33 - TSS region transcription start site region 88155
Tssr88156 9 14500428 to 14500460 32 - TSS region transcription start site region 88156
Tssr88157 9 14500489 to 14500503 14 - TSS region transcription start site region 88157
Tssr88158 9 14500507 to 14500526 19 - TSS region transcription start site region 88158
Tssr83836 9 14500611 to 14500620 9 + TSS region transcription start site region 83836
Cwc15 9 14500617 to 14510577 9960 + protein coding gene CWC15 spliceosome-associated protein
Tssr83837 9 14500625 to 14500651 26 + TSS region transcription start site region 83837
Tssr83838 9 14500660 to 14500737 77 + TSS region transcription start site region 83838
Tssr83839 9 14501886 to 14501919 33 + TSS region transcription start site region 83839
Tssr83840 9 14501980 to 14501998 18 + TSS region transcription start site region 83840
Gm47090 9 14525090 to 14525761 671 - pseudogene predicted gene, 47090
Amotl1 9 14541966 to 14645056 103090 - protein coding gene angiomotin-like 1
Tssr88159 9 14543574 to 14543612 38 - TSS region transcription start site region 88159
D9Mit61 9 14547275 to 14547421 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 61
Tssr88160 9 14574603 to 14574606 3 - TSS region transcription start site region 88160
5830461L22Rik 9 14586095 to 14592609 6514 unclassified gene RIKEN cDNA 5830461L22 gene
Tssr88161 9 14596519 to 14596535 16 - TSS region transcription start site region 88161
Cpgi21359 9 14614230 to 14615155 925 CpG island CpG island 21359
Tssr88162 9 14614799 to 14614808 9 - TSS region transcription start site region 88162
Tssr88163 9 14614826 to 14614837 11 - TSS region transcription start site region 88163
Tssr2783 9 14614865 to 14614884 19 - TSS region transcription start site region 2783
Tssr88164 9 14614893 to 14614906 13 - TSS region transcription start site region 88164
Tssr88165 9 14614949 to 14615034 85 - TSS region transcription start site region 88165
Tssr88166 9 14615297 to 14615309 12 - TSS region transcription start site region 88166
Tssr88167 9 14615389 to 14615401 12 - TSS region transcription start site region 88167
Tssr88168 9 14615418 to 14615425 7 - TSS region transcription start site region 88168
Tssr88169 9 14615428 to 14615438 10 - TSS region transcription start site region 88169
Tssr88170 9 14615445 to 14615455 10 - TSS region transcription start site region 88170
Tssr88171 9 14615473 to 14615490 17 - TSS region transcription start site region 88171
4930584E12Rik 9 14618585 to 14619565 980 - unclassified gene RIKEN cDNA 4930584E12 gene
Tssr88172 9 14634235 to 14634240 5 - TSS region transcription start site region 88172
Tssr88173 9 14634272 to 14634277 5 - TSS region transcription start site region 88173
Tssr88174 9 14634291 to 14634324 33 - TSS region transcription start site region 88174
Tssr88175 9 14643523 to 14643542 19 - TSS region transcription start site region 88175
Tssr88176 9 14643555 to 14643571 16 - TSS region transcription start site region 88176
Tssr2784 9 14643609 to 14643616 7 + TSS region transcription start site region 2784
Tssr83841 9 14643647 to 14643657 10 + TSS region transcription start site region 83841
Gm34263 9 14643772 to 14645792 2020 + lincRNA gene predicted gene, 34263
Tssr88177 9 14662906 to 14662920 14 - TSS region transcription start site region 88177
Tssr88178 9 14662925 to 14662950 25 - TSS region transcription start site region 88178
Tssr88179 9 14662961 to 14662974 13 - TSS region transcription start site region 88179
Tssr88180 9 14662988 to 14663006 18 - TSS region transcription start site region 88180
Tssr88181 9 14663014 to 14663076 62 - TSS region transcription start site region 88181
Gm7607 9 14663022 to 14665099 2077 + lincRNA gene predicted gene 7607
Tssr83842 9 14663070 to 14663078 8 + TSS region transcription start site region 83842
Tssr88182 9 14663098 to 14663117 19 - TSS region transcription start site region 88182
Tssr88183 9 14675989 to 14675995 6 - TSS region transcription start site region 88183
Tssr88184 9 14676017 to 14676028 11 - TSS region transcription start site region 88184
Tssr88185 9 14676036 to 14676041 5 - TSS region transcription start site region 88185
Tssr88186 9 14676048 to 14676054 6 - TSS region transcription start site region 88186
Tssr88187 9 14676224 to 14676251 27 - TSS region transcription start site region 88187
Gm19790 9 14679970 to 14680220 250 + pseudogene predicted gene, 19790
Gm18997 9 14693523 to 14694338 815 + pseudogene predicted gene, 18997
Piwil4 9 14701782 to 14740765 38983 - protein coding gene piwi-like RNA-mediated gene silencing 4
Tssr83843 9 14704506 to 14704515 9 + TSS region transcription start site region 83843
Tssr83844 9 14704525 to 14704551 26 + TSS region transcription start site region 83844
Gm10706 9 14704642 to 14719058 14416 + antisense lncRNA gene predicted gene 10706
Tssr88188 9 14718381 to 14718393 12 - TSS region transcription start site region 88188
Gm34651 9 14724626 to 14732081 7455 + lncRNA gene predicted gene, 34651
Gm15586 9 14736195 to 14736722 527 + pseudogene predicted gene 15586
Cpgi21360 9 14740516 to 14740760 244 CpG island CpG island 21360
Tssr88189 9 14740618 to 14740624 6 - TSS region transcription start site region 88189
Tssr88190 9 14740642 to 14740653 11 - TSS region transcription start site region 88190
Tssr88191 9 14740666 to 14740677 11 - TSS region transcription start site region 88191
Tssr88192 9 14740691 to 14740696 5 - TSS region transcription start site region 88192
Fut4 9 14748459 to 14752122 3663 - protein coding gene fucosyltransferase 4
Cpgi21361 9 14750660 to 14752525 1865 CpG island CpG island 21361
Tssr88193 9 14751958 to 14751973 15 - TSS region transcription start site region 88193
Tssr88194 9 14751987 to 14752016 29 - TSS region transcription start site region 88194