Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:12622952-13972999

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm25365 9 12780165 to 12780285 120 + rRNA gene predicted gene, 25365
Gm7570 9 12819525 to 12820219 694 + pseudogene predicted gene 7570
Tssr83801 9 12839130 to 12839135 5 + TSS region transcription start site region 83801
Tssr83802 9 12865361 to 12865364 3 + TSS region transcription start site region 83802
Gm21070 9 12865433 to 12866417 984 + pseudogene predicted gene, 21070
D9Mit58 9 12902732 to 12902908 176 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 58
Chol6 9 12902732 to 12902908 176 QTL cholesterol 6
4930568E12Rik 9 13091267 to 13105855 14588 - lincRNA gene RIKEN cDNA 4930568E12 gene
Tssr88137 9 13105851 to 13105858 7 - TSS region transcription start site region 88137
Gm47051 9 13106013 to 13136998 30985 + lincRNA gene predicted gene, 47051
Tssr2762 9 13179365 to 13179386 21 + TSS region transcription start site region 2762
Jrkl 9 13242790 to 13245741 2951 - protein coding gene Jrk-like
Tssr2763 9 13246945 to 13247002 57 + TSS region transcription start site region 2763
Ccdc82 9 13246955 to 13292520 45565 + protein coding gene coiled-coil domain containing 82
Gm26189 9 13275516 to 13275622 106 + snRNA gene predicted gene, 26189
Tssr2764 9 13296584 to 13296601 17 + TSS region transcription start site region 2764
Tssr2765 9 13296621 to 13296670 49 + TSS region transcription start site region 2765
Tssr2766 9 13296681 to 13296736 55 + TSS region transcription start site region 2766
Tssr2767 9 13296737 to 13296825 88 + TSS region transcription start site region 2767
Tssr2768 9 13296839 to 13296852 13 + TSS region transcription start site region 2768
Tssr2769 9 13296964 to 13296979 15 + TSS region transcription start site region 2769
Tssr2770 9 13297952 to 13297999 47 + TSS region transcription start site region 2770
Maml2 9 13297957 to 13709388 411431 + protein coding gene mastermind like transcriptional coactivator 2
Tssr2771 9 13298131 to 13298184 53 + TSS region transcription start site region 2771
Tssr2772 9 13298185 to 13298201 16 + TSS region transcription start site region 2772
Tssr2773 9 13302913 to 13302915 2 + TSS region transcription start site region 2773
Gm47087 9 13308214 to 13312446 4232 + unclassified gene predicted gene, 47087
Tssr2774 9 13310790 to 13310830 40 + TSS region transcription start site region 2774
Tssr2775 9 13310876 to 13310889 13 + TSS region transcription start site region 2775
Tssr2776 9 13317583 to 13317589 6 + TSS region transcription start site region 2776
Tssr2777 9 13324032 to 13324055 23 + TSS region transcription start site region 2777
Tssr83803 9 13414342 to 13414388 46 + TSS region transcription start site region 83803
Dcollq1 9 13430544 to 13430544 0 QTL differential colonization level QTL 1
Phxr4 9 13431361 to 13432751 1390 + unclassified gene per-hexamer repeat gene 4
Tssr83804 9 13433149 to 13433154 5 + TSS region transcription start site region 83804
Gm17571 9 13444034 to 13446753 2719 - protein coding gene predicted gene, 17571
Tssr83805 9 13466640 to 13466649 9 + TSS region transcription start site region 83805
Tssr83806 9 13470003 to 13470009 6 + TSS region transcription start site region 83806
Tssr83807 9 13473863 to 13473867 4 + TSS region transcription start site region 83807
Tssr2778 9 13514680 to 13514695 15 + TSS region transcription start site region 2778
Tssr2779 9 13514715 to 13514744 29 + TSS region transcription start site region 2779
Gm47089 9 13519936 to 13520101 165 + unclassified gene predicted gene, 47089
Tssr83808 9 13620977 to 13620991 14 + TSS region transcription start site region 83808
Gm22643 9 13621226 to 13621326 100 + miRNA gene predicted gene, 22643
Tssr83809 9 13625680 to 13625685 5 + TSS region transcription start site region 83809
Tssr83810 9 13662193 to 13662194 1 + TSS region transcription start site region 83810
Tssr83811 9 13662584 to 13662630 46 + TSS region transcription start site region 83811
Tssr83812 9 13707275 to 13707279 4 + TSS region transcription start site region 83812
Tssr83813 9 13708915 to 13708929 14 + TSS region transcription start site region 83813
Gm47105 9 13727087 to 13727442 355 - pseudogene predicted gene, 47105
Gm39291 9 13737293 to 13749116 11823 - lncRNA gene predicted gene, 39291
Mtmr2 9 13748410 to 13806481 58071 + protein coding gene myotubularin related protein 2
Cpgi21353 9 13748829 to 13749709 880 CpG island CpG island 21353
Tssr83814 9 13749154 to 13749205 51 + TSS region transcription start site region 83814
Tssr83815 9 13749244 to 13749275 31 + TSS region transcription start site region 83815
Tssr83816 9 13749291 to 13749321 30 + TSS region transcription start site region 83816
Tssr83817 9 13751418 to 13751420 2 + TSS region transcription start site region 83817
Tssr2780 9 13765915 to 13765920 5 + TSS region transcription start site region 2780
Tssr83818 9 13765929 to 13765944 15 + TSS region transcription start site region 83818
Tssr83819 9 13765947 to 13765968 21 + TSS region transcription start site region 83819
Tssr83820 9 13765970 to 13765983 13 + TSS region transcription start site region 83820
Tssr83821 9 13766785 to 13766797 12 + TSS region transcription start site region 83821
Tssr83822 9 13766824 to 13766841 17 + TSS region transcription start site region 83822
Tssr83823 9 13806024 to 13806027 3 + TSS region transcription start site region 83823
Tssr83824 9 13806696 to 13806699 3 + TSS region transcription start site region 83824
Cep57 9 13807792 to 13827107 19315 - protein coding gene centrosomal protein 57
Tssr88138 9 13818670 to 13818689 19 - TSS region transcription start site region 88138
Tssr88139 9 13821688 to 13821693 5 - TSS region transcription start site region 88139
Cpgi21354 9 13826376 to 13828424 2048 CpG island CpG island 21354
Tssr88140 9 13826542 to 13826554 12 - TSS region transcription start site region 88140
Tssr88141 9 13826911 to 13826945 34 - TSS region transcription start site region 88141
Tssr88142 9 13826946 to 13826972 26 - TSS region transcription start site region 88142
Tssr88143 9 13826981 to 13827000 19 - TSS region transcription start site region 88143
Tssr88144 9 13827008 to 13827028 20 - TSS region transcription start site region 88144
Tssr88145 9 13827029 to 13827129 100 - TSS region transcription start site region 88145
Tssr83825 9 13827218 to 13827226 8 + TSS region transcription start site region 83825
Tssr2781 9 13827372 to 13827388 16 - TSS region transcription start site region 2781
Fam76b 9 13827700 to 13854687 26987 + protein coding gene family with sequence similarity 76, member B
Tssr83826 9 13827708 to 13827781 73 + TSS region transcription start site region 83826
Tssr83827 9 13827781 to 13827784 3 + TSS region transcription start site region 83827
Tssr83828 9 13827818 to 13827828 10 + TSS region transcription start site region 83828
Tssr83829 9 13833050 to 13833075 25 + TSS region transcription start site region 83829
Tssr83830 9 13835501 to 13835504 3 + TSS region transcription start site region 83830
D9Mit219 9 13866466 to 13866584 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 219
D9Mit219.1 9 13866582 to 13866771 189 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 219.1
Gm7588 9 13868706 to 13869276 570 + pseudogene predicted gene 7588
Tssr83831 9 13894846 to 13894852 6 + TSS region transcription start site region 83831
D9Mit84 9 13901574 to 13901707 133 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 84
Gm47535 9 13915801 to 13920119 4318 - lincRNA gene predicted gene, 47535
Gm47557 9 13945281 to 13981814 36533 + lincRNA gene predicted gene, 47557