Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:123843298-125003310

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148 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fyco1 9 123789500 to 123851899 62399 - protein coding gene FYVE and coiled-coil domain containing 1
Tssr92171 9 123844573 to 123844584 11 - TSS region transcription start site region 92171
Tssr92172 9 123844588 to 123844620 32 - TSS region transcription start site region 92172
Tssr92173 9 123845188 to 123845200 12 - TSS region transcription start site region 92173
Tssr87963 9 123845437 to 123845450 13 + TSS region transcription start site region 87963
Tssr87964 9 123845454 to 123845463 9 + TSS region transcription start site region 87964
Tssr87965 9 123850286 to 123850302 16 + TSS region transcription start site region 87965
Tssr87966 9 123850321 to 123850333 12 + TSS region transcription start site region 87966
Tssr87967 9 123851038 to 123851073 35 + TSS region transcription start site region 87967
Tssr87968 9 123851248 to 123851283 35 + TSS region transcription start site region 87968
Tssr87969 9 123851284 to 123851314 30 + TSS region transcription start site region 87969
Tssr87970 9 123851324 to 123851335 11 + TSS region transcription start site region 87970
Cpgi22557 9 123851345 to 123852242 897 CpG island CpG island 22557
Tssr87971 9 123851383 to 123851431 48 + TSS region transcription start site region 87971
Tssr92174 9 123851804 to 123851815 11 - TSS region transcription start site region 92174
Tssr92175 9 123851855 to 123851912 57 - TSS region transcription start site region 92175
Tssr87972 9 123852142 to 123852208 66 + TSS region transcription start site region 87972
Xcr1 9 123852315 to 123862029 9714 - protein coding gene chemokine (C motif) receptor 1
Tssr87973 9 123853360 to 123853366 6 + TSS region transcription start site region 87973
Tssr92176 9 123862013 to 123862020 7 - TSS region transcription start site region 92176
Tssr92177 9 123862023 to 123862035 12 - TSS region transcription start site region 92177
Gm2774 9 123867808 to 123868953 1145 - pseudogene predicted gene 2774
Tssr92178 9 123872109 to 123872157 48 - TSS region transcription start site region 92178
Tssr87974 9 123872294 to 123872332 38 + TSS region transcription start site region 87974
Tssr92179 9 123872964 to 123872969 5 - TSS region transcription start site region 92179
Tssr3059 9 123923249 to 123923290 41 - TSS region transcription start site region 3059
Tssr3060 9 123924332 to 123924342 10 - TSS region transcription start site region 3060
Tssr3061 9 123924672 to 123924687 15 - TSS region transcription start site region 3061
Tssr3062 9 123924762 to 123924779 17 - TSS region transcription start site region 3062
Tssr3063 9 123924826 to 123924847 21 - TSS region transcription start site region 3063
Tssr3064 9 123924975 to 123925017 42 + TSS region transcription start site region 3064
Tssr3065 9 123927355 to 123927380 25 - TSS region transcription start site region 3065
Tssr3066 9 123927480 to 123927514 34 + TSS region transcription start site region 3066
Tssr3067 9 123927537 to 123927548 11 + TSS region transcription start site region 3067
Tssr3068 9 123927877 to 123927887 10 - TSS region transcription start site region 3068
Tssr3069 9 123927945 to 123927957 12 - TSS region transcription start site region 3069
Tssr3070 9 123928184 to 123928207 23 + TSS region transcription start site region 3070
Tssr3071 9 123928219 to 123928260 41 + TSS region transcription start site region 3071
Tssr3072 9 123928290 to 123928308 18 + TSS region transcription start site region 3072
Tssr3073 9 123928311 to 123928371 60 + TSS region transcription start site region 3073
Tssr3074 9 123928796 to 123928840 44 - TSS region transcription start site region 3074
Tssr3075 9 123928873 to 123928881 8 - TSS region transcription start site region 3075
Tssr3076 9 123928929 to 123928939 10 + TSS region transcription start site region 3076
Tssr3077 9 123929159 to 123929182 23 + TSS region transcription start site region 3077
Tssr3078 9 123929190 to 123929205 15 - TSS region transcription start site region 3078
Tssr3079 9 123931107 to 123931135 28 - TSS region transcription start site region 3079
Tssr92180 9 123931684 to 123931712 28 - TSS region transcription start site region 92180
Tssr87975 9 123931746 to 123931770 24 + TSS region transcription start site region 87975
Tssr3080 9 123931875 to 123931904 29 + TSS region transcription start site region 3080
Tssr87976 9 123933918 to 123933931 13 + TSS region transcription start site region 87976
Tssr87977 9 123935721 to 123935724 3 + TSS region transcription start site region 87977
Tssr3081 9 123936721 to 123936726 5 - TSS region transcription start site region 3081
Tssr87978 9 123936900 to 123936908 8 + TSS region transcription start site region 87978
Tssr87979 9 123936921 to 123936932 11 + TSS region transcription start site region 87979
Tssr87980 9 123936946 to 123936954 8 + TSS region transcription start site region 87980
Tssr92181 9 123938075 to 123938078 3 - TSS region transcription start site region 92181
Tssr87981 9 123938223 to 123938232 9 + TSS region transcription start site region 87981
Tssr87982 9 123938250 to 123938258 8 + TSS region transcription start site region 87982
Tssr87983 9 123938266 to 123938276 10 + TSS region transcription start site region 87983
Tssr92182 9 123940179 to 123940190 11 - TSS region transcription start site region 92182
Tssr92183 9 123940202 to 123940220 18 - TSS region transcription start site region 92183
Tssr87984 9 123940568 to 123940572 4 + TSS region transcription start site region 87984
Tssr92184 9 123942140 to 123942153 13 - TSS region transcription start site region 92184
Tssr87985 9 123942283 to 123942298 15 + TSS region transcription start site region 87985
Tssr92185 9 123957802 to 123957809 7 - TSS region transcription start site region 92185
Ccr1 9 123962126 to 123968692 6566 - protein coding gene chemokine (C-C motif) receptor 1
Tssr87986 9 123965025 to 123965035 10 + TSS region transcription start site region 87986
Tssr87987 9 123965048 to 123965063 15 + TSS region transcription start site region 87987
Tssr87988 9 123965079 to 123965090 11 + TSS region transcription start site region 87988
Tssr87989 9 123965432 to 123965451 19 + TSS region transcription start site region 87989
Tssr92186 9 123968396 to 123968411 15 - TSS region transcription start site region 92186
Tssr92187 9 123968441 to 123968455 14 - TSS region transcription start site region 92187
Tssr92188 9 123968542 to 123968557 15 - TSS region transcription start site region 92188
Tssr92189 9 123968574 to 123968593 19 - TSS region transcription start site region 92189
Tssr92190 9 123968605 to 123968632 27 - TSS region transcription start site region 92190
Tssr92191 9 123968639 to 123968644 5 - TSS region transcription start site region 92191
Tssr92192 9 123968648 to 123968680 32 - TSS region transcription start site region 92192
Tssr92193 9 123968683 to 123968697 14 - TSS region transcription start site region 92193
Tssr92194 9 123968699 to 123968714 15 - TSS region transcription start site region 92194
Ccr1l1 9 123977243 to 123978408 1165 - protein coding gene chemokine (C-C motif) receptor 1-like 1
Tssr92195 9 123978297 to 123978299 2 - TSS region transcription start site region 92195
Tssr92196 9 123986630 to 123986639 9 - TSS region transcription start site region 92196
Tssr92197 9 123986648 to 123986653 5 - TSS region transcription start site region 92197
Tssr92198 9 123986670 to 123986677 7 - TSS region transcription start site region 92198
Tssr92199 9 123986685 to 123986688 3 - TSS region transcription start site region 92199
Tssr92200 9 123986710 to 123986720 10 - TSS region transcription start site region 92200
Tssr92201 9 123986771 to 123986776 5 - TSS region transcription start site region 92201
Tssr87990 9 124021965 to 124021977 12 + TSS region transcription start site region 87990
Ccr3 9 124021972 to 124031689 9717 + protein coding gene chemokine (C-C motif) receptor 3
Tssr87991 9 124022110 to 124022123 13 + TSS region transcription start site region 87991
Tssr87992 9 124041372 to 124041382 10 + TSS region transcription start site region 87992
Tssr92202 9 124066867 to 124066871 4 - TSS region transcription start site region 92202
Tssr87993 9 124073544 to 124073555 11 + TSS region transcription start site region 87993
Tssr87994 9 124080055 to 124080100 45 + TSS region transcription start site region 87994
Ccr2 9 124101918 to 124109140 7222 + protein coding gene chemokine (C-C motif) receptor 2
Tssr87995 9 124101944 to 124101959 15 + TSS region transcription start site region 87995
Tssr87996 9 124101966 to 124101987 21 + TSS region transcription start site region 87996
Tssr87997 9 124102040 to 124102048 8 + TSS region transcription start site region 87997
Tssr87998 9 124102110 to 124102166 56 + TSS region transcription start site region 87998
Tssr87999 9 124102457 to 124102462 5 + TSS region transcription start site region 87999
Tssr88000 9 124103417 to 124103422 5 + TSS region transcription start site region 88000
Tssr88001 9 124103610 to 124103624 14 + TSS region transcription start site region 88001
Tssr88002 9 124103746 to 124103783 37 + TSS region transcription start site region 88002
Tssr88003 9 124103796 to 124103808 12 + TSS region transcription start site region 88003
Tssr88004 9 124121534 to 124121584 50 + TSS region transcription start site region 88004
Ccr5 9 124121543 to 124127183 5640 + protein coding gene chemokine (C-C motif) receptor 5
Tssr88005 9 124142302 to 124142330 28 + TSS region transcription start site region 88005
Tssr88006 9 124143944 to 124143967 23 + TSS region transcription start site region 88006
Tssr3082 9 124257613 to 124257622 9 - TSS region transcription start site region 3082
Gm39469 9 124270358 to 124282139 11781 - lincRNA gene predicted gene, 39469
Tssr3083 9 124273505 to 124273510 5 + TSS region transcription start site region 3083
Tssr3084 9 124281240 to 124281271 31 - TSS region transcription start site region 3084
Tssr3085 9 124282116 to 124282203 87 - TSS region transcription start site region 3085
Tssr3086 9 124282914 to 124282930 16 + TSS region transcription start site region 3086
2010315B03Rik 9 124291804 to 124312696 20892 - protein coding gene RIKEN cDNA 2010315B03 gene
Tssr3087 9 124312641 to 124312699 58 - TSS region transcription start site region 3087
Tssr3088 9 124316895 to 124316926 31 - TSS region transcription start site region 3088
Gm47180 9 124338979 to 124347160 8181 + pseudogene predicted gene, 47180
Gm47179 9 124340783 to 124342618 1835 - unclassified gene predicted gene, 47179
Gm47181 9 124344398 to 124347514 3116 - lincRNA gene predicted gene, 47181
Nlrp4g 9 124348831 to 124354491 5660 + protein coding gene NLR family, pyrin domain containing 4G
Gm47182 9 124369217 to 124369493 276 + pseudogene predicted gene, 47182
Tssr3089 9 124408712 to 124408742 30 + TSS region transcription start site region 3089
Ppp2r3d 9 124422622 to 124476898 54276 - protein coding gene protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta
Tssr3090 9 124422715 to 124422779 64 - TSS region transcription start site region 3090
Tssr3091 9 124423230 to 124423262 32 + TSS region transcription start site region 3091
4930526I15Rik 9 124423251 to 124424856 1605 + lncRNA gene RIKEN cDNA 4930526I15 gene
Tssr3092 9 124423266 to 124423290 24 + TSS region transcription start site region 3092
Tssr3093 9 124423298 to 124423310 12 + TSS region transcription start site region 3093
Tssr3094 9 124423308 to 124423362 54 - TSS region transcription start site region 3094
Tssr3095 9 124423532 to 124423563 31 - TSS region transcription start site region 3095
Tssr3096 9 124423581 to 124423643 62 - TSS region transcription start site region 3096
Tssr3097 9 124423697 to 124423719 22 - TSS region transcription start site region 3097
Tssr3098 9 124424057 to 124424070 13 - TSS region transcription start site region 3098
Tssr3099 9 124424077 to 124424173 96 - TSS region transcription start site region 3099
Tssr3100 9 124424174 to 124424198 24 - TSS region transcription start site region 3100
Tssr3101 9 124424258 to 124424310 52 - TSS region transcription start site region 3101
Tssr3102 9 124424384 to 124424453 69 - TSS region transcription start site region 3102
Tssr3103 9 124424471 to 124424495 24 - TSS region transcription start site region 3103
Tssr3104 9 124424546 to 124424587 41 - TSS region transcription start site region 3104
Tssr3105 9 124424626 to 124424697 71 - TSS region transcription start site region 3105
Gm20783 9 124425287 to 124434039 8752 - protein coding gene predicted gene, 20783
Tssr3106 9 124440657 to 124440710 53 + TSS region transcription start site region 3106
Tssr3107 9 124440824 to 124440842 18 + TSS region transcription start site region 3107
Tssr3108 9 124441578 to 124441612 34 + TSS region transcription start site region 3108
Gm47185 9 124451955 to 124452597 642 + pseudogene predicted gene, 47185
Gm47183 9 124471703 to 124472476 773 + unclassified gene predicted gene, 47183
Gm21836 9 124493731 to 124493793 62 - protein coding gene predicted gene, 21836