Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:123341637-123781641

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92 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi22551 9 123366739 to 123367233 494 CpG island CpG island 22551
Tssr87907 9 123366921 to 123366953 32 + TSS region transcription start site region 87907
Lars2 9 123366927 to 123462666 95739 + protein coding gene leucyl-tRNA synthetase, mitochondrial
Gm46137 9 123381659 to 123390477 8818 + lncRNA gene predicted gene, 46137
Tssr87908 9 123461896 to 123461910 14 + TSS region transcription start site region 87908
Tssr87909 9 123461928 to 123461984 56 + TSS region transcription start site region 87909
Cpgi22552 9 123461958 to 123462186 228 CpG island CpG island 22552
Tssr87910 9 123461993 to 123462000 7 + TSS region transcription start site region 87910
Tssr87911 9 123462075 to 123462090 15 + TSS region transcription start site region 87911
Tssr87912 9 123462096 to 123462103 7 + TSS region transcription start site region 87912
Tssr87913 9 123462140 to 123462166 26 + TSS region transcription start site region 87913
Gm40586 9 123464208 to 123470014 5806 + lncRNA gene predicted gene, 40586
Cpgi22553 9 123478101 to 123479491 1390 CpG island CpG island 22553
Tssr87914 9 123478657 to 123478681 24 + TSS region transcription start site region 87914
Tssr87915 9 123478693 to 123478733 40 + TSS region transcription start site region 87915
Limd1 9 123478706 to 123521552 42846 + protein coding gene LIM domains containing 1
Tssr87916 9 123478738 to 123478782 44 + TSS region transcription start site region 87916
Tssr87917 9 123509167 to 123509178 11 + TSS region transcription start site region 87917
Tssr87918 9 123509180 to 123509205 25 + TSS region transcription start site region 87918
Tssr87919 9 123509222 to 123509236 14 + TSS region transcription start site region 87919
Tssr87920 9 123509260 to 123509287 27 + TSS region transcription start site region 87920
Tssr87921 9 123510049 to 123510069 20 + TSS region transcription start site region 87921
Tssr3058 9 123510485 to 123510516 31 + TSS region transcription start site region 3058
Tssr87922 9 123510524 to 123510536 12 + TSS region transcription start site region 87922
Tssr87923 9 123515503 to 123515517 14 + TSS region transcription start site region 87923
Tssr87924 9 123520590 to 123520611 21 + TSS region transcription start site region 87924
Cpgi22554 9 123528916 to 123530373 1457 CpG island CpG island 22554
n-TRacg2 9 123529425 to 123529497 72 - tRNA gene nuclear encoded tRNA arginine 2 (anticodon ACG)
Tssr92139 9 123529571 to 123529611 40 - TSS region transcription start site region 92139
Tssr87925 9 123529745 to 123529756 11 + TSS region transcription start site region 87925
Tssr87926 9 123529777 to 123529837 60 + TSS region transcription start site region 87926
Tssr87927 9 123529843 to 123529859 16 + TSS region transcription start site region 87927
Sacm1l 9 123529882 to 123592600 62718 + protein coding gene SAC1 suppressor of actin mutations 1-like (yeast)
Tssr87928 9 123534298 to 123534311 13 + TSS region transcription start site region 87928
Tssr87929 9 123561637 to 123561641 4 + TSS region transcription start site region 87929
Slc6a20b 9 123593820 to 123632565 38745 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 20B
Tssr92140 9 123632360 to 123632370 10 - TSS region transcription start site region 92140
Tssr92141 9 123632384 to 123632387 3 - TSS region transcription start site region 92141
Tssr92142 9 123632457 to 123632462 5 - TSS region transcription start site region 92142
Tssr92143 9 123632469 to 123632491 22 - TSS region transcription start site region 92143
Tssr92144 9 123632493 to 123632525 32 - TSS region transcription start site region 92144
Tssr92145 9 123632528 to 123632543 15 - TSS region transcription start site region 92145
Tssr92146 9 123632545 to 123632548 3 - TSS region transcription start site region 92146
Gm17120 9 123635388 to 123637325 1937 + antisense lncRNA gene predicted gene 17120
Slc6a20a 9 123636907 to 123678832 41925 - protein coding gene solute carrier family 6 (neurotransmitter transporter), member 20A
Gm47173 9 123643166 to 123645489 2323 + unclassified gene predicted gene, 47173
Gm47171 9 123644194 to 123646987 2793 - unclassified gene predicted gene, 47171
Tssr92147 9 123650720 to 123650734 14 - TSS region transcription start site region 92147
Gm17200 9 123678096 to 123701046 22950 + lincRNA gene predicted gene 17200
Cpgi22555 9 123678263 to 123679317 1054 CpG island CpG island 22555
Tssr92148 9 123678813 to 123678850 37 - TSS region transcription start site region 92148
Tssr92149 9 123678852 to 123678863 11 - TSS region transcription start site region 92149
Tssr92150 9 123678873 to 123678878 5 - TSS region transcription start site region 92150
Gm10052 9 123689233 to 123690192 959 - pseudogene predicted pseudogene 10052
Lztfl1 9 123694413 to 123717668 23255 - protein coding gene leucine zipper transcription factor-like 1
Tssr92151 9 123710587 to 123710622 35 - TSS region transcription start site region 92151
Cpgi22556 9 123717285 to 123718011 726 CpG island CpG island 22556
Tssr92152 9 123717540 to 123717574 34 - TSS region transcription start site region 92152
Tssr92153 9 123717576 to 123717632 56 - TSS region transcription start site region 92153
Tssr87930 9 123757043 to 123757049 6 + TSS region transcription start site region 87930
Tssr92154 9 123760218 to 123760227 9 - TSS region transcription start site region 92154
Tssr87931 9 123761439 to 123761447 8 + TSS region transcription start site region 87931
Gm17020 9 123762503 to 123762776 273 + pseudogene predicted gene 17020
Tssr87932 9 123766961 to 123766971 10 + TSS region transcription start site region 87932
Ccr9 9 123767211 to 123783457 16246 + protein coding gene chemokine (C-C motif) receptor 9
Tssr87933 9 123767217 to 123767241 24 + TSS region transcription start site region 87933
Gm17021 9 123767508 to 123772910 5402 - sense overlapping lncRNA gene predicted gene 17021
Tssr87934 9 123769172 to 123769183 11 + TSS region transcription start site region 87934
Tssr87935 9 123769196 to 123769215 19 + TSS region transcription start site region 87935
Tssr92155 9 123769505 to 123769514 9 - TSS region transcription start site region 92155
Tssr87936 9 123769880 to 123769890 10 + TSS region transcription start site region 87936
Tssr87937 9 123769898 to 123769908 10 + TSS region transcription start site region 87937
Tssr87938 9 123773312 to 123773344 32 + TSS region transcription start site region 87938
Tssr87939 9 123773519 to 123773530 11 + TSS region transcription start site region 87939
Tssr87940 9 123774596 to 123774601 5 + TSS region transcription start site region 87940
Tssr87941 9 123774750 to 123774761 11 + TSS region transcription start site region 87941
Tssr87942 9 123774800 to 123774810 10 + TSS region transcription start site region 87942
Tssr87943 9 123774852 to 123774869 17 + TSS region transcription start site region 87943
Tssr87944 9 123774962 to 123774973 11 + TSS region transcription start site region 87944
Tssr87945 9 123775014 to 123775025 11 + TSS region transcription start site region 87945
Tssr87946 9 123775030 to 123775041 11 + TSS region transcription start site region 87946
Tssr87947 9 123775056 to 123775069 13 + TSS region transcription start site region 87947
Tssr87948 9 123776503 to 123776511 8 + TSS region transcription start site region 87948
Tssr87949 9 123780347 to 123780355 8 + TSS region transcription start site region 87949
Tssr87950 9 123781186 to 123781198 12 + TSS region transcription start site region 87950
Tssr87951 9 123781202 to 123781249 47 + TSS region transcription start site region 87951
Tssr87952 9 123781255 to 123781306 51 + TSS region transcription start site region 87952
Tssr87953 9 123781403 to 123781420 17 + TSS region transcription start site region 87953
Tssr87954 9 123781428 to 123781440 12 + TSS region transcription start site region 87954
Tssr87955 9 123781456 to 123781472 16 + TSS region transcription start site region 87955
Tssr92156 9 123781495 to 123781504 9 - TSS region transcription start site region 92156
Tssr87956 9 123781600 to 123781621 21 + TSS region transcription start site region 87956